Carg01743 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01743
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	tetratricopeptide repeat protein 38
Location	Cucurbita_argyrosperma_scaffold_003 : 203351 .. 205922 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTCAATATAGGTGTCGGTTTAAAGAAGCGGTTGGGTTTATGGAAGCTTGCTCGCCTACGTGGAGTGACTGTTTGTCGTTCTTGTATGTACATAAAACTTCGCGAATCGGAGTTTTTATTTGAATGGATTTGTCTGTTTGATATATTGTATGTTTGGAAAATATCAATTTTCAGGGTGACACATAATTGGTGGCATGTGGCTCTCTGTTACCTGGAAGCCAATTCTCCATTGAGTAAAATCCTTGAAATATATGACAACTATATATGGAAAGAGTTGGAAAAACCTGATGCTATGGGACCAGATGTACTTTTCGTTTCAATATTACTGTCTATGCAGCCAATTATTCTTTAATTTCAGGTCTTAAATTTTGGCATTTCAGGTATACTTGAATGCCCTTGGTTTGATGTTGCGGTTGTTTGTTCGTGGTGAATTTGGTCCATGTGAGGGTCGTCTGAAGATCTTGGCCAATGTTTTAACCGATAAGGTGAGTTGCGATCCTTCCCTTCCCTTCCTTTCAACCAACCAACCAACTAAATCCTAATAATAATGATGGAGGGTGAAAAAGACGAGGTGGGGTATGATAACCCGGTTGAAGCGTAATGATCATACGTCATAGGTCCCATTCTTCTACCCTTTTCCGGGAGCCGATGACTATTCATAGCTGACACCACAAGGGAGTTCTCTGTATATTGGTCTAAAAACGATCTCCCTTTTCCGACCCTCTTTTCCCCTACCAAAGTACATACGTTTTACAATCTTGGTTTTCTATGCTATACTTGTATGAAACCTGTTTACAGGATTTATGCATGATAATGTTGACAAGCCTATTCTTTCCTCTATACCAACTAAAACGCCTGTCTATGTTGTGAAGTTTAGAGAATGCACAGTTGATGGCGGAAGCGCAAGGCTTGAATTCAATCAGCTAGCTGATTCATTCTCATTCTTTTTCACGTGAAGTATTCTTGAATAATCTAGAGTTAACCGCTATTTTCAGGCTAACTGGCATCTAGAGTGGCACTTTGACTTGTTGACAACATGGGCTTTGGCTAAAAGTGGAGAGATTTTTGCAGCAGAAGAGTTACTTGGGAGCTTGAAGTCCCGGTTCATACAATCTTCTCTCATTACACTCTTATTTATTTACATGTGTGTGTTTGTGGCTCTTTGTTTACTGTTATTGGTCTTTTTGTATAGAATGTTGAAAATGACACCGAAGAAACAAGAAAAGATGCAAAGAGGAATGATGGTTTGTTTCCTTTTTCTAGTCTCGTGTACCCTTTAAGTGGTCTATTCACGACACATGTTGGGCTCTTTATTTGTAACCTATGATTGTGACACCTTTTCTTTCCTTCCTATTATTATAACTACTTTAGAAGATTCCACATCGGTTGGAGAGGGGAACGAAACATTCCTTATAAAGATGTGGAAACATCTCTCTAACAGACGTGTTTTAAAACCTTGAGAAAAAACCCAGAAGAGAAAGTCTAAAGAGGACAATATCTGCTAGTGGTGGAATTGGGCTGTTACAAATTGTATTAGAGCCAGACAGTAGGCGGTGTGCCAGTAAGGATGTTGGTCCCCCAAGGGGGTTGGATTGTGAGATCCCACATCGGTTAGAGAGGGGAACGAAACATTCCTTACAAGGGCGTGGAAACCTCTCTCTAGCAGATACGTTTTAAAAGCTTGAGGGGAAATCCATAAGGAAAAGCCCAAAGAGGAAAATATCTGCTAGCGGTGGGTTTGAACCGTTACTTTGCCTTCATTTTTGTTTCATGTGGCAAGCTCAACTCATTATTCAATAGAAATATGGACATGACCTTGAGAAGTTCAAACAGCATTTTGACATGTTCATTTTGAATTTTGGAACTGTTTTATGCTGCCACAAAACTGTGAATCCATCTTGTGAACTGCTTTAGTAAACAGAACTTAAGGCAAGTTTATTCTTCCTTTTCAATTTCATGACCTTGTTTGTGTATTTCCAGCTTGCAGAAGCTCTCTACCTGTACGGGAGAGGAGATTACAAACGCGCATTAGACTTGCTTGGTTTGGATTTTGATGCAAATGATTGCAAGGTATCAATATCAACGCTGATATATATTTCTTCATCTCTATCAACTTGGTTTGACTTATGACCCAGACATATTCTTCTGATTATGTTCTAGATGATTGGTGCATCAAACGAACAACTTGATGTATTTAATGAAGTATGGTACGACATTTTGATGAACACAGGACATGCTGCAAAGGGTAAGAAGAAAGTTCCACTTTTTCTATTCCTTCTCGTATCACGACATTCTTCAAAGCATGACTTTCACAGTTACATAATATAGCGATCGAAGTAATCGAGAAACAGATCAAGAAAAGGGAAGAAGCCCCATATCTGTGGCGCCTTCTGGTATAAATGCTACTCTCACGTTTGACTATTATCGATAACAGTCGAGTTTTCCAATGAAAATATGGTTCGTTTCGACTCCTGCAGGAGAGAGGGTACAGCAAACTTGGAAGTCCAGAGGAAGCTGCCATTGCCGGAGACAAAGCCAGGAGCTTGGAGAAGGGTCATTTCAAGTAA

mRNA sequence

ATGTTCTTCAATATAGGTGTCGGTTTAAAGAAGCGGTTGGGTTTATGGAAGCTTGCTCGCCTACGTGGAGTGACTGTTTGTCGTTCTTGTATGTACATAAAACTTCGCGAATCGGAGTTTTTATTTGAATGGATTTGTCTGTTTGATATATTGTATGTTTGGAAAATATCAATTTTCAGGGTGACACATAATTGGTGGCATGTGGCTCTCTGTTACCTGGAAGCCAATTCTCCATTGAGTAAAATCCTTGAAATATATGACAACTATATATGGAAAGAGTTGGAAAAACCTGATGCTATGGGACCAGATGTATACTTGAATGCCCTTGGTTTGATGTTGCGGTTGTTTGTTCGTGGTGAATTTGGTCCATGTGAGGGTCGTCTGAAGATCTTGGCCAATGTTTTAACCGATAAGGCTAACTGGCATCTAGAGTGGCACTTTGACTTGTTGACAACATGGGCTTTGGCTAAAAGTGGAGAGATTTTTGCAGCAGAAGAGTTACTTGGGAGCTTGAAGTCCCGAATGTTGAAAATGACACCGAAGAAACAAGAAAAGATGCAAAGAGGAATGATGCTTGCAGAAGCTCTCTACCTGTACGGGAGAGGAGATTACAAACGCGCATTAGACTTGCTTGGTTTGGATTTTGATGCAAATGATTGCAAGATGATTGGTGCATCAAACGAACAACTTGATGTATTTAATGAAGTATGGTACGACATTTTGATGAACACAGGACATGCTGCAAAGGCGATCGAAGTAATCGAGAAACAGATCAAGAAAAGGGAAGAAGCCCCATATCTGTGGCGCCTTCTGGAGAGAGGGTACAGCAAACTTGGAAGTCCAGAGGAAGCTGCCATTGCCGGAGACAAAGCCAGGAGCTTGGAGAAGGGTCATTTCAAGTAA

Coding sequence (CDS)

ATGTTCTTCAATATAGGTGTCGGTTTAAAGAAGCGGTTGGGTTTATGGAAGCTTGCTCGCCTACGTGGAGTGACTGTTTGTCGTTCTTGTATGTACATAAAACTTCGCGAATCGGAGTTTTTATTTGAATGGATTTGTCTGTTTGATATATTGTATGTTTGGAAAATATCAATTTTCAGGGTGACACATAATTGGTGGCATGTGGCTCTCTGTTACCTGGAAGCCAATTCTCCATTGAGTAAAATCCTTGAAATATATGACAACTATATATGGAAAGAGTTGGAAAAACCTGATGCTATGGGACCAGATGTATACTTGAATGCCCTTGGTTTGATGTTGCGGTTGTTTGTTCGTGGTGAATTTGGTCCATGTGAGGGTCGTCTGAAGATCTTGGCCAATGTTTTAACCGATAAGGCTAACTGGCATCTAGAGTGGCACTTTGACTTGTTGACAACATGGGCTTTGGCTAAAAGTGGAGAGATTTTTGCAGCAGAAGAGTTACTTGGGAGCTTGAAGTCCCGAATGTTGAAAATGACACCGAAGAAACAAGAAAAGATGCAAAGAGGAATGATGCTTGCAGAAGCTCTCTACCTGTACGGGAGAGGAGATTACAAACGCGCATTAGACTTGCTTGGTTTGGATTTTGATGCAAATGATTGCAAGATGATTGGTGCATCAAACGAACAACTTGATGTATTTAATGAAGTATGGTACGACATTTTGATGAACACAGGACATGCTGCAAAGGCGATCGAAGTAATCGAGAAACAGATCAAGAAAAGGGAAGAAGCCCCATATCTGTGGCGCCTTCTGGAGAGAGGGTACAGCAAACTTGGAAGTCCAGAGGAAGCTGCCATTGCCGGAGACAAAGCCAGGAGCTTGGAGAAGGGTCATTTCAAGTAA

Protein sequence

MFFNIGVGLKKRLGLWKLARLRGVTVCRSCMYIKLRESEFLFEWICLFDILYVWKISIFRVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVRGEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRMLKMTPKKQEKMQRGMMLAEALYLYGRGDYKRALDLLGLDFDANDCKMIGASNEQLDVFNEVWYDILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLGSPEEAAIAGDKARSLEKGHFK

Homology

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BLAST of Carg01743 vs. NCBI nr
Match: XP_022956843.1 (tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 491.5 bits (1264), Expect = 2.0e-135
Identity = 236/242 (97.52%), Postives = 239/242 (98.76%), Query Frame = 0


Query: 59  FRVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVR 118
           F VTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVR
Sbjct: 228 FLVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVR 287

Query: 119 GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRMLKM 178
           GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRMLKM
Sbjct: 288 GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRMLKM 347

Query: 179 TPKKQEKMQRGMMLAEALYLYGRGDYKRALDLLGLDFDANDCKMIGASNEQLDVFNEVWY 238
           TPKKQEKMQRGM+LAEALY+YGRGDYKRALDL+GLDFDANDCKMIGASNEQLDVFNEVWY
Sbjct: 348 TPKKQEKMQRGMLLAEALYMYGRGDYKRALDLVGLDFDANDCKMIGASNEQLDVFNEVWY 407

Query: 239 DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLGSPEEAAIAGDKARSLEKGH 298
           DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLG PEEAAIAGDKARSLEK H
Sbjct: 408 DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLGRPEEAAIAGDKARSLEKAH 467

Query: 299 FK 301
           FK
Sbjct: 468 FK 469

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BLAST of Carg01743 vs. NCBI nr
Match: XP_022976859.1 (tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 491.1 bits (1263), Expect = 2.7e-135
Identity = 237/242 (97.93%), Postives = 238/242 (98.35%), Query Frame = 0


Query: 59  FRVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVR 118
           F VTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVR
Sbjct: 228 FLVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVR 287

Query: 119 GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRMLKM 178
           GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRMLKM
Sbjct: 288 GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRMLKM 347

Query: 179 TPKKQEKMQRGMMLAEALYLYGRGDYKRALDLLGLDFDANDCKMIGASNEQLDVFNEVWY 238
           TPKKQEKMQRGM+LAEALY YGRGDYKRALDLLGLDFDANDCKMIGASNEQLDVFNEVWY
Sbjct: 348 TPKKQEKMQRGMLLAEALYKYGRGDYKRALDLLGLDFDANDCKMIGASNEQLDVFNEVWY 407

Query: 239 DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLGSPEEAAIAGDKARSLEKGH 298
           DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLG PEEAAIAGDKARSLEK H
Sbjct: 408 DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLGRPEEAAIAGDKARSLEKAH 467

Query: 299 FK 301
           FK
Sbjct: 468 FK 469

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BLAST of Carg01743 vs. NCBI nr
Match: XP_023537841.1 (tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 481.1 bits (1237), Expect = 2.7e-132
Identity = 232/242 (95.87%), Postives = 236/242 (97.52%), Query Frame = 0


Query: 59  FRVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVR 118
           F VTHNWWHVALCYLEANSPLSKILEIYD+YIWKELEKPDAMGPDVYLNALGLMLRLFVR
Sbjct: 228 FLVTHNWWHVALCYLEANSPLSKILEIYDDYIWKELEKPDAMGPDVYLNALGLMLRLFVR 287

Query: 119 GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRMLKM 178
           GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIF AEELLGSL+SRMLKM
Sbjct: 288 GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFPAEELLGSLESRMLKM 347

Query: 179 TPKKQEKMQRGMMLAEALYLYGRGDYKRALDLLGLDFDANDCKMIGASNEQLDVFNEVWY 238
           TPKKQEKMQRGM+LAEALY YGRGDYK ALDLLGLDFDANDCKMIGASNEQLDVFNEVWY
Sbjct: 348 TPKKQEKMQRGMLLAEALYKYGRGDYKGALDLLGLDFDANDCKMIGASNEQLDVFNEVWY 407

Query: 239 DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLGSPEEAAIAGDKARSLEKGH 298
           DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERG+SKLG PEEAAIAGDKARSLEK H
Sbjct: 408 DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGHSKLGRPEEAAIAGDKARSLEKAH 467

Query: 299 FK 301
           FK
Sbjct: 468 FK 469

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BLAST of Carg01743 vs. NCBI nr
Match: XP_023537849.1 (tetratricopeptide repeat protein 38-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 481.1 bits (1237), Expect = 2.7e-132
Identity = 232/242 (95.87%), Postives = 236/242 (97.52%), Query Frame = 0


Query: 59  FRVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVR 118
           F VTHNWWHVALCYLEANSPLSKILEIYD+YIWKELEKPDAMGPDVYLNALGLMLRLFVR
Sbjct: 200 FLVTHNWWHVALCYLEANSPLSKILEIYDDYIWKELEKPDAMGPDVYLNALGLMLRLFVR 259

Query: 119 GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRMLKM 178
           GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIF AEELLGSL+SRMLKM
Sbjct: 260 GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFPAEELLGSLESRMLKM 319

Query: 179 TPKKQEKMQRGMMLAEALYLYGRGDYKRALDLLGLDFDANDCKMIGASNEQLDVFNEVWY 238
           TPKKQEKMQRGM+LAEALY YGRGDYK ALDLLGLDFDANDCKMIGASNEQLDVFNEVWY
Sbjct: 320 TPKKQEKMQRGMLLAEALYKYGRGDYKGALDLLGLDFDANDCKMIGASNEQLDVFNEVWY 379

Query: 239 DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLGSPEEAAIAGDKARSLEKGH 298
           DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERG+SKLG PEEAAIAGDKARSLEK H
Sbjct: 380 DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGHSKLGRPEEAAIAGDKARSLEKAH 439

Query: 299 FK 301
           FK
Sbjct: 440 FK 441

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BLAST of Carg01743 vs. NCBI nr
Match: XP_004135208.1 (PREDICTED: tetratricopeptide repeat protein 38 isoform X1 [Cucumis sativus] >XP_011655657.1 PREDICTED: tetratricopeptide repeat protein 38 isoform X1 [Cucumis sativus] >KGN51864.1 hypothetical protein Csa_5G604090 [Cucumis sativus])

HSP 1 Score: 453.0 bits (1164), Expect = 8.0e-124
Identity = 215/242 (88.84%), Postives = 230/242 (95.04%), Query Frame = 0


Query: 59  FRVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVR 118
           F VTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDA+GP+VYLNALGLMLRLFVR
Sbjct: 228 FMVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAIGPEVYLNALGLMLRLFVR 287

Query: 119 GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRMLKM 178
           GE+ PCEGRLKILANVLTDKANWHLEWHFD+LT WALAK+GEIFAA+ELLGSLKSR+ KM
Sbjct: 288 GEYDPCEGRLKILANVLTDKANWHLEWHFDILTLWALAKAGEIFAADELLGSLKSRLSKM 347

Query: 179 TPKKQEKMQRGMMLAEALYLYGRGDYKRALDLLGLDFDANDCKMIGASNEQLDVFNEVWY 238
           T KK+EKMQR ++LAEALY YGRGDY+RALDLLGLDFDAND KMIGASNEQLDVFNEVWY
Sbjct: 348 TAKKREKMQRRVLLAEALYKYGRGDYERALDLLGLDFDANDYKMIGASNEQLDVFNEVWY 407

Query: 239 DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLGSPEEAAIAGDKARSLEKGH 298
           DILMNTGHAAKAIEVIEKQIKKREE PYLW LLERGY+K+G P+E+AIAGDKARSLEK H
Sbjct: 408 DILMNTGHAAKAIEVIEKQIKKREEVPYLWHLLERGYNKIGRPDESAIAGDKARSLEKAH 467

Query: 299 FK 301
           FK
Sbjct: 468 FK 469

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BLAST of Carg01743 vs. TAIR10
Match: AT1G27150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 282.0 bits (720), Expect = 4.4e-76
Identity = 135/243 (55.56%), Postives = 179/243 (73.66%), Query Frame = 0


Query: 57  SIFRVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLF 116
           S F  THNWWHVALCYLE  SP+SK+ EIYD++IWKELEK DA+ P+VYLNALGL++RL 
Sbjct: 226 SSFMYTHNWWHVALCYLEGGSPMSKVEEIYDHHIWKELEKDDAVPPEVYLNALGLLIRLD 285

Query: 117 VRGEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRML 176
           VR      E RLK LA  LT++ANW+LEWH D+L  WALAK GE   A ELL  LK R+ 
Sbjct: 286 VRDALDGFEDRLKNLAVRLTNQANWYLEWHLDILIVWALAKVGETSRAHELLEGLKFRLS 345

Query: 177 KMTPKKQEKMQRGMMLAEALYLYGRGDYKRALDLLGLDFDANDCKMIGASNEQLDVFNEV 236
           K   KKQ+ MQ+G+ L EA+Y Y RG+Y++AL+LLG +F+A   K++GAS+EQ+DVFNE+
Sbjct: 346 KKNKKKQQVMQKGIQLGEAVYEYARGNYEKALELLGSEFNAIGYKIVGASDEQIDVFNEM 405

Query: 237 WYDILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLGSPEEAAIAGDKARSLEK 296
           W  +L+ TG ++ A EVI ++IK R+  P++WRLLE+ YS  G+ E  + A ++A+ LE 
Sbjct: 406 WCQLLLKTGQSSTAKEVIRERIKARDGIPFMWRLLEKSYSMEGNAEAESSARERAKKLES 465

Query: 297 GHF 300
            +F
Sbjct: 466 CYF 468

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BLAST of Carg01743 vs. TAIR10
Match: AT1G27110.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 270.0 bits (689), Expect = 1.7e-72
Identity = 132/245 (53.88%), Postives = 176/245 (71.84%), Query Frame = 0


Query: 57  SIFRVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLF 116
           S  R +HNWWHVA+CYLE  S +SK+ E+YD+ +WKELEK DA+  DVY +ALGL+LRL 
Sbjct: 237 SSLRFSHNWWHVAVCYLEGGSHISKVEEVYDHQMWKELEKDDAVARDVYTDALGLLLRLD 296

Query: 117 VRGEFGP-CEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRM 176
            RG+     + RL+ LA+ LTDKA W+ +W FD+ T WAL+K  +   A ELL  LKSR 
Sbjct: 297 TRGKLDDGFQDRLEKLADSLTDKAMWYQDWLFDITTIWALSKVEKTSLAHELLEGLKSRT 356

Query: 177 LKMTPKKQEKMQRGMMLAEALYLYGRGDYKRALDLLGLDFDANDCKMIGASNEQLDVFNE 236
             M PKKQ+ MQ+ ++LAEA+Y YG+G+Y+ AL+LLGLDFDA + K+IG S  Q+DVFNE
Sbjct: 357 SAMNPKKQKLMQKAILLAEAVYEYGKGNYEIALELLGLDFDAANYKVIGGSGLQMDVFNE 416

Query: 237 VWYDILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLGSPEEAAIAGDKARSLE 296
           +WY +L+  G ++ AIEV+EK  K+R+ AP+LWRLLE  YS  G  +    AG KA++LE
Sbjct: 417 IWYKLLLLNGKSSTAIEVLEKVTKQRDGAPFLWRLLEESYSMEGKEKAGISAGKKAKALE 476

Query: 297 KGHFK 301
             +FK
Sbjct: 477 SSYFK 481

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BLAST of Carg01743 vs. TrEMBL
Match: tr|A0A0A0KSI1|A0A0A0KSI1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604090 PE=4 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 5.3e-124
Identity = 215/242 (88.84%), Postives = 230/242 (95.04%), Query Frame = 0


Query: 59  FRVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVR 118
           F VTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDA+GP+VYLNALGLMLRLFVR
Sbjct: 228 FMVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAIGPEVYLNALGLMLRLFVR 287

Query: 119 GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRMLKM 178
           GE+ PCEGRLKILANVLTDKANWHLEWHFD+LT WALAK+GEIFAA+ELLGSLKSR+ KM
Sbjct: 288 GEYDPCEGRLKILANVLTDKANWHLEWHFDILTLWALAKAGEIFAADELLGSLKSRLSKM 347

Query: 179 TPKKQEKMQRGMMLAEALYLYGRGDYKRALDLLGLDFDANDCKMIGASNEQLDVFNEVWY 238
           T KK+EKMQR ++LAEALY YGRGDY+RALDLLGLDFDAND KMIGASNEQLDVFNEVWY
Sbjct: 348 TAKKREKMQRRVLLAEALYKYGRGDYERALDLLGLDFDANDYKMIGASNEQLDVFNEVWY 407

Query: 239 DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLGSPEEAAIAGDKARSLEKGH 298
           DILMNTGHAAKAIEVIEKQIKKREE PYLW LLERGY+K+G P+E+AIAGDKARSLEK H
Sbjct: 408 DILMNTGHAAKAIEVIEKQIKKREEVPYLWHLLERGYNKIGRPDESAIAGDKARSLEKAH 467

Query: 299 FK 301
           FK
Sbjct: 468 FK 469

[Close]

BLAST of Carg01743 vs. TrEMBL
Match: tr|A0A1S4DWG1|A0A1S4DWG1_CUCME (tetratricopeptide repeat protein 38 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489066 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 2.6e-123
Identity = 213/242 (88.02%), Postives = 228/242 (94.21%), Query Frame = 0


Query: 59  FRVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVR 118
           F VTHNWWHVALCYLEANSP SKILE+YDNYIWKELEKPDAMGP+VYLNALGLMLRLFVR
Sbjct: 215 FMVTHNWWHVALCYLEANSPPSKILELYDNYIWKELEKPDAMGPEVYLNALGLMLRLFVR 274

Query: 119 GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRMLKM 178
           GEF PCEGRLKILANVLTDKANWHLEWHFD+LT+WALAK+GE FAA++LLGSLKSR+LKM
Sbjct: 275 GEFDPCEGRLKILANVLTDKANWHLEWHFDILTSWALAKAGETFAADKLLGSLKSRLLKM 334

Query: 179 TPKKQEKMQRGMMLAEALYLYGRGDYKRALDLLGLDFDANDCKMIGASNEQLDVFNEVWY 238
           T KK+EKMQRG++LAEALY YGRGDY+ ALDLLGLDFDAND KMIGASNEQLDVFNEVWY
Sbjct: 335 TSKKREKMQRGVLLAEALYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEVWY 394

Query: 239 DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLGSPEEAAIAGDKARSLEKGH 298
           DILMNTGH AKAIEVIEKQ K+REE PYLW LLERGY+K+G PEEAAIAGDKARSLEK H
Sbjct: 395 DILMNTGHTAKAIEVIEKQAKRREEVPYLWHLLERGYNKIGRPEEAAIAGDKARSLEKAH 454

Query: 299 FK 301
           FK
Sbjct: 455 FK 456

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BLAST of Carg01743 vs. TrEMBL
Match: tr|A0A1S3BFD6|A0A1S3BFD6_CUCME (tetratricopeptide repeat protein 38 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489066 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 2.6e-123
Identity = 213/242 (88.02%), Postives = 228/242 (94.21%), Query Frame = 0


Query: 59  FRVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVR 118
           F VTHNWWHVALCYLEANSP SKILE+YDNYIWKELEKPDAMGP+VYLNALGLMLRLFVR
Sbjct: 228 FMVTHNWWHVALCYLEANSPPSKILELYDNYIWKELEKPDAMGPEVYLNALGLMLRLFVR 287

Query: 119 GEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRMLKM 178
           GEF PCEGRLKILANVLTDKANWHLEWHFD+LT+WALAK+GE FAA++LLGSLKSR+LKM
Sbjct: 288 GEFDPCEGRLKILANVLTDKANWHLEWHFDILTSWALAKAGETFAADKLLGSLKSRLLKM 347

Query: 179 TPKKQEKMQRGMMLAEALYLYGRGDYKRALDLLGLDFDANDCKMIGASNEQLDVFNEVWY 238
           T KK+EKMQRG++LAEALY YGRGDY+ ALDLLGLDFDAND KMIGASNEQLDVFNEVWY
Sbjct: 348 TSKKREKMQRGVLLAEALYKYGRGDYEHALDLLGLDFDANDYKMIGASNEQLDVFNEVWY 407

Query: 239 DILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLGSPEEAAIAGDKARSLEKGH 298
           DILMNTGH AKAIEVIEKQ K+REE PYLW LLERGY+K+G PEEAAIAGDKARSLEK H
Sbjct: 408 DILMNTGHTAKAIEVIEKQAKRREEVPYLWHLLERGYNKIGRPEEAAIAGDKARSLEKAH 467

Query: 299 FK 301
           FK
Sbjct: 468 FK 469

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BLAST of Carg01743 vs. TrEMBL
Match: tr|A0A2N9EC77|A0A2N9EC77_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS51 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.4e-92
Identity = 177/300 (59.00%), Postives = 216/300 (72.00%), Query Frame = 0


Query: 1   MFFNIGVGLKKRLGLWKLARLRGVTVCRSCMYIKLRESEFLFEWICLFDILYVWKISIFR 60
           M++++   L+K+   WK A L GV V R                              + 
Sbjct: 179 MYYSMSATLRKQWSSWKDAHLLGVLVHR------------------------------YM 238

Query: 61  VTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVRGE 120
           +THNWWHVALCYLE NSP+ ++LE+YD+ IWKELEK DA  P+V+LNALGL+LRL+VRGE
Sbjct: 239 LTHNWWHVALCYLEGNSPIQRVLEVYDHCIWKELEKSDAACPEVHLNALGLLLRLYVRGE 298

Query: 121 FGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRMLKMTP 180
               E RLKILA  LTD+ANW+LEWHFD LT WALA +G++  AE LL  LKSR  +M+ 
Sbjct: 299 IDAFEDRLKILAGCLTDEANWYLEWHFDSLTIWALASTGKLSKAEALLNGLKSRFSRMSL 358

Query: 181 KKQEKMQRGMMLAEALYLYGRGDYKRALDLLGLDFDANDCKMIGASNEQLDVFNEVWYDI 240
           KKQ+ MQRGM+LAEALY YGRG+ K+AL+LLG DFDAN+CK IGASNEQ DVFNEVWY +
Sbjct: 359 KKQQLMQRGMLLAEALYEYGRGNEKQALELLGPDFDANNCKAIGASNEQADVFNEVWYSM 418

Query: 241 LMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLGSPEEAAIAGDKARSLEKGHFK 300
           L+NTG AAKAIEVIEK+IKKRE  P+LW LLERGY+  G  +EAAI G+KAR+LE  +FK
Sbjct: 419 LLNTGQAAKAIEVIEKRIKKREGVPFLWCLLERGYNLTGR-KEAAIVGEKARALETTYFK 447

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BLAST of Carg01743 vs. TrEMBL
Match: tr|V4TPL7|V4TPL7_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10031073mg PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 2.9e-90
Identity = 164/244 (67.21%), Postives = 199/244 (81.56%), Query Frame = 0


Query: 57  SIFRVTHNWWHVALCYLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLF 116
           S F  THNWWHVALCY+E +SP+ K+LEIYDN+IWKELEKPDA+ P+VYLNALGL+LR++
Sbjct: 225 SSFMYTHNWWHVALCYMEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVY 284

Query: 117 VRGEFGPCEGRLKILANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKSRML 176
           VRGE      RLK+LA+ + D+ANW+LE H DLL  WALA +GE+  AE+LL  LKSR  
Sbjct: 285 VRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHS 344

Query: 177 KMTPKKQEKMQRGMMLAEALYLYGRGDYKRALDLLGLDFDANDCKMIGASNEQLDVFNEV 236
           KM  KKQE MQ G+ LAEALY YGRG+ ++AL+LLG DFDAN CKMIGAS+EQLDVFNEV
Sbjct: 345 KMIKKKQELMQTGVQLAEALYAYGRGNDEKALELLGPDFDANSCKMIGASDEQLDVFNEV 404

Query: 237 WYDILMNTGHAAKAIEVIEKQIKKREEAPYLWRLLERGYSKLGSPEEAAIAGDKARSLEK 296
           WY +L+NTG AAKAIEVI+K+IKKRE AP+LWRLLER YS +G  E AA++ +KAR+LE 
Sbjct: 405 WYSLLLNTGRAAKAIEVIDKRIKKREGAPFLWRLLERAYSMVGRQEAAAVS-EKARTLEA 464

Query: 297 GHFK 301
            +FK
Sbjct: 465 AYFK 467

The following BLAST results are available for this feature:

BLAST of Carg01743 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956843.1	2.0e-135	97.52	tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita moschata]	[more]
XP_022976859.1	2.7e-135	97.93	tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita maxima]	[more]
XP_023537841.1	2.7e-132	95.87	tetratricopeptide repeat protein 38-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023537849.1	2.7e-132	95.87	tetratricopeptide repeat protein 38-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_004135208.1	8.0e-124	88.84	PREDICTED: tetratricopeptide repeat protein 38 isoform X1 [Cucumis sativus] >XP_...	[more]

BLAST of Carg01743 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G27150.1	4.4e-76	55.56	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G27110.1	1.7e-72	53.88	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg01743 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg01743 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSI1\|A0A0A0KSI1_CUCSA	5.3e-124	88.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604090 PE=4 SV=1	[more]
tr\|A0A1S4DWG1\|A0A1S4DWG1_CUCME	2.6e-123	88.02	tetratricopeptide repeat protein 38 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A1S3BFD6\|A0A1S3BFD6_CUCME	2.6e-123	88.02	tetratricopeptide repeat protein 38 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A2N9EC77\|A0A2N9EC77_FAGSY	2.4e-92	59.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS51 PE=4 SV=1	[more]
tr\|V4TPL7\|V4TPL7_9ROSI	2.9e-90	67.21	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10031073mg PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR033891	TTC38
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01743-RA	Carg01743-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 67..300 e-value: 4.2E-6 score: 28.2
IPR033891	Tetratricopeptide repeat protein 38	PANTHER	PTHR16263	FAMILY NOT NAMED	coord: 54..279
None	No IPR available	PANTHER	PTHR16263:SF4	TETRATRICOPEPTIDE REPEAT PROTEIN 38	coord: 54..279

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01743	Cla010138	Watermelon (97103) v1	carwmB0839
Carg01743	Csa5G604090	Cucumber (Chinese Long) v2	carcuB0860
Carg01743	MELO3C012048	Melon (DHL92) v3.5.1	carmeB0831
Carg01743	ClCG05G024760	Watermelon (Charleston Gray)	carwcgB0813
Carg01743	CSPI05G23230	Wild cucumber (PI 183967)	carcpiB0880
Carg01743	Cucsa.285550	Cucumber (Gy14) v1	carcgyB0966
Carg01743	CmaCh04G016160	Cucurbita maxima (Rimu)	carcmaB1170
Carg01743	CmoCh04G016930	Cucurbita moschata (Rifu)	carcmoB1138
Carg01743	Lsi04G004880	Bottle gourd (USVL1VR-Ls)	carlsiB764
Carg01743	Cp4.1LG01g12920	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01743	MELO3C012048.2	Melon (DHL92) v3.6.1	carmedB0843
Carg01743	CsaV3_5G032130	Cucumber (Chinese Long) v3	carcucB0884
Carg01743	Cla97C05G106890	Watermelon (97103) v2	carwmbB0875
Carg01743	Bhi07G001330	Wax gourd	carwgoB0980

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01743	Watermelon (97103) v2	carwmbB0871
Carg01743	Watermelon (97103) v2	carwmbB0879
Carg01743	Watermelon (97103) v2	carwmbB0882
Carg01743	Wax gourd	carwgoB0978
Carg01743	Cucumber (Gy14) v2	carcgybB0833