Carg01637 (gene) Silver-seed gourd

Overview
NameCarg01637
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionF-box/kelch-repeat protein SKIP6
LocationCucurbita_argyrosperma_scaffold_004 : 2137809 .. 2139455 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAACATATCTTAAGAATACTATTGGTTACACTATGAAGATTGCAGGGTGTCGATCAAATTGTCGACAAAGTTCTCCCTGTGTTGCCTCCACTGCACCATCAGATGGAAGTGGGTTTTGTTATTACGTATCATCCGGTTTTATTAGGGGATATCATAGTGTGTTGAGGATTATTGAGAGGGAGTCCCACGTTGGCTAATTAAGGGATGATCATTGGTTTATAAGTAAGGAATACATTGCCATTGGAATAAGCCCTTTTGGAGAAACAAAAAACAAAGTCACAAGAGCTTATGTTCAAAGTGGACTATGTCATACCAATTGTGAAAGGTCGTGATTAATAATAGTCTACATCAGCTCATTAAGGGATTGATCATGAATTTATAAGAAATACATCTTCATTGGTATAAGGCATTTTGGGGAAATCAAAAGCAAAGCCACGAGAGCTTATGCTTTAAGTGGACCATATCATACCATTGTGGAAGGTCATGGTGGTTGAGGATTGTTGGGAGAGGAGTCCCACATCAGCTAATTAAGAGGTTGATCATGGGTTTATAAGTAAGGAATACATTTCCATTGGTATATCTTTCGAAGAAACAAAAGCAAGCTTCTGGTGCTCCTGTCAAGAACTGCATCGTGTGACTGAGGGTTTCAAAGAAAAGCCCAAGCCGGTGGAGGACACACCATTTGAATCTGGTGAGATTGGTTGGTTTCTGCTCGGAGGATGTCACAAGGAGGGGAGAAACATTTTTTTTATAAATGTGTGGAAATCTCTCCCGAGCAAACGTGTTTTAAAAACTTTGAAAGAAAGTCCAAAGAGAACAACATCATCCGTTAGCGGTGGAGTTGGACAGTTTGGCTTCCATGACGGAACAAGTTTGTACTCCAAAATGAAAACTTTGAATTGAAGACTCTACATTCATACAACAGTTGAACAATACAATACAAACACAATTGACAGTTGACAGAAAGTAACAACACAATTATTTTTAAGGAACAGCTTCTCCCACACTAAATCTTGATGCAAGCTTAAGACCAACGGAATCACTGTCCTACTTCAACCACCTTGGATCCCCGATCGAGCGACGCCTTCACCGCATCGATCACCAGCTGAGTCTTACGACTAATGGATGGCCATTTCTTCTCAGGTTTGGAGCCCTTCTCTTTAATTTCTTTAACCAAACGAGAGAATTCCCCCACCATGCGAGCCTCTTGAGAAAGCTCAGTCGGGACGACATGTTTGCTCGATACCGGTTTCCATCCGGTCGCAAGCTCATTGAACCGAGATTTGGAACTGGTGAAGAAATAGGCCTCCTTCTCATCGTAAGGTATAACGAAATCATTAAGACTCAATGTCCCATTGGTTCCTATGGCAGTGGTGTCCATGGTCAAGTTCGACAAGAAAGAGCAATGGAAGGTCGCTACTTTGCCATCGTCCCAAAACAGTGAGCTTCCACACGACAAAATGACGCCGGATTCATTCAAAACAGGGTTAGGCAACGCAAGCACTGTTGTAGGCAGTTGGAAGTCGGCAGCAAAGAGAATCGAACGAATACAATACCACCCGACATCGCCCAAAGCACCAAGACCATCGAGATCCGGTTTTATGCGAATATCATTGGCTATGAACTCAGAATCAGTAGCGTAA

mRNA sequence

ATGCTAACATATCTTAAGAATACTATTGGTTACACTATGAAGATTGCAGGGTGTCGATCAAATTGTCGACAAAGAACAGCTTCTCCCACACTAAATCTTGATGCAAGCTTAAGACCAACGGAATCACTGTCCTACTTCAACCACCTTGGATCCCCGATCGAGCGACGCCTTCACCGCATCGATCACCAGCTGAGTCTTACGACTAATGGATGGCCATTTCTTCTCAGGTTTGGAGCCCTTCTCTTTAATTTCTTTAACCAAACGAGAGAATTCCCCCACCATGCGAGCCTCTTGAGAAAGCTCAGTCGGGACGACATGTTTGCTCGATACCGGTTTCCATCCGGTCGCAAGCTCATTGAACCGAGATTTGGAACTGGTGAAGAAATAGGCCTCCTTCTCATCGTAAGACTCAATGTCCCATTGGTTCCTATGGCAGTGGTGTCCATGGTCAAGTTCGACAAGAAAGAGCAATGGAAGGTCGCTACTTTGCCATCGTCCCAAAACAGTGAGCTTCCACACGACAAAATGACGCCGGATTCATTCAAAACAGGGTTAGGCAACGCAAGCACTGTTGTAGGCAGTTGGAAGTCGGCAGCAAAGAGAATCGAACGAATACAATACCACCCGACATCGCCCAAAGCACCAAGACCATCGAGATCCGGTTTTATGCGAATATCATTGGCTATGAACTCAGAATCAGTAGCGTAA

Coding sequence (CDS)

ATGCTAACATATCTTAAGAATACTATTGGTTACACTATGAAGATTGCAGGGTGTCGATCAAATTGTCGACAAAGAACAGCTTCTCCCACACTAAATCTTGATGCAAGCTTAAGACCAACGGAATCACTGTCCTACTTCAACCACCTTGGATCCCCGATCGAGCGACGCCTTCACCGCATCGATCACCAGCTGAGTCTTACGACTAATGGATGGCCATTTCTTCTCAGGTTTGGAGCCCTTCTCTTTAATTTCTTTAACCAAACGAGAGAATTCCCCCACCATGCGAGCCTCTTGAGAAAGCTCAGTCGGGACGACATGTTTGCTCGATACCGGTTTCCATCCGGTCGCAAGCTCATTGAACCGAGATTTGGAACTGGTGAAGAAATAGGCCTCCTTCTCATCGTAAGACTCAATGTCCCATTGGTTCCTATGGCAGTGGTGTCCATGGTCAAGTTCGACAAGAAAGAGCAATGGAAGGTCGCTACTTTGCCATCGTCCCAAAACAGTGAGCTTCCACACGACAAAATGACGCCGGATTCATTCAAAACAGGGTTAGGCAACGCAAGCACTGTTGTAGGCAGTTGGAAGTCGGCAGCAAAGAGAATCGAACGAATACAATACCACCCGACATCGCCCAAAGCACCAAGACCATCGAGATCCGGTTTTATGCGAATATCATTGGCTATGAACTCAGAATCAGTAGCGTAA

Protein sequence

MLTYLKNTIGYTMKIAGCRSNCRQRTASPTLNLDASLRPTESLSYFNHLGSPIERRLHRIDHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRKLSRDDMFARYRFPSGRKLIEPRFGTGEEIGLLLIVRLNVPLVPMAVVSMVKFDKKEQWKVATLPSSQNSELPHDKMTPDSFKTGLGNASTVVGSWKSAAKRIERIQYHPTSPKAPRPSRSGFMRISLAMNSESVA
Homology
[Close]
BLAST of Carg01637 vs. NCBI nr
Match: OAY80878.1 (F-box/kelch-repeat protein SKIP6 [Ananas comosus])

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-05
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 0 

Query: 49  LGSPIERRLHRIDHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRKLSRDDMFA 108
           L S I+RRLH IDH+L L++N  P LL   + + +  +Q RE  HH   L KL  D+M A
Sbjct: 328 LKSLIDRRLHCIDHKLRLSSNSRPLLLWLISRIPDPCHQPRELLHHKRFLGKLGCDNMLA 387

Query: 109 RYRFPSGRKLIEPR 123
             R PSG +L E R
Sbjct: 388 WQRLPSGHELGETR 401

[Close]
BLAST of Carg01637 vs. TrEMBL
Match: tr|A0A199VV63|A0A199VV63_ANACO (F-box/kelch-repeat protein SKIP6 OS=Ananas comosus OX=4615 GN=ACMD2_01124 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-05
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 0 

Query: 49  LGSPIERRLHRIDHQLSLTTNGWPFLLRFGALLFNFFNQTREFPHHASLLRKLSRDDMFA 108
           L S I+RRLH IDH+L L++N  P LL   + + +  +Q RE  HH   L KL  D+M A
Sbjct: 328 LKSLIDRRLHCIDHKLRLSSNSRPLLLWLISRIPDPCHQPRELLHHKRFLGKLGCDNMLA 387

Query: 109 RYRFPSGRKLIEPR 123
             R PSG +L E R
Sbjct: 388 WQRLPSGHELGETR 401

The following BLAST results are available for this feature:
BLAST of Carg01637 vs. NCBI nr
Match NameE-valueIdentityDescription
OAY80878.14.5e-0545.95F-box/kelch-repeat protein SKIP6 [Ananas comosus][more]
BLAST of Carg01637 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg01637 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg01637 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A199VV63|A0A199VV63_ANACO3.0e-0545.95F-box/kelch-repeat protein SKIP6 OS=Ananas comosus OX=4615 GN=ACMD2_01124 PE=4 S... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01637-RACarg01637-RAmRNA