Carg00996 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00996
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATP-dependent RNA helicase
Location	Cucurbita_argyrosperma_scaffold_002 : 443341 .. 447635 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGGTTTTGGCGCCGACGATCAAATTCACGGCCCTGTTTTGCTAGGGTTTTGAAGCCGACGATCAAAAGGAGGTAATCTAGGTCGGTAGCTGAATTTAGGGATTCAAGTTTCTGAAAGTTTAAAGGAGAATACAATATTCGTGAGAGACGCAGATTTGTTAGCCCATTGTGATGGAGAAGGGGGCTTCTTTCTTGTTCGCTGGCATTCATTTTGACAAGAAGAGGTTCGCCGCAGATTTCTCTAGGTTCGAGGTAAACGTCTGTAGCTGCGTTGTTGACTGTTTTATTATGAGAAAATTGAAGGATTCTGTGAGGTAATTCAACTTTGTCGTTTTAACAGGGCAAAAAAGAAAGTGATGATGTAATCGAAGGTTTGAGTAACATTGCTAATAGTGATTTCGAAGTAATTGAGGATTCAACGCATTCGGAGAAGAGGAAGAGGAAGAGGAAATCAGCGGCTACGGGTATATTGCCGAATGCTTTGAATTGCTTGTGGCCAATCGCGTCATTGTAAGCCGTTGAGCTTAGTTTTAACTCTTTTTTTTTTTCCTTATGTAGAATCGGTGGAGGGGTTCAGCGTCTTCAAGGATTCAAAACTAACTGTAGCTGCTTCAGTGAATGAGGAAAATCATCCATCTGAAAACGATCCTTCCGAAGAGAGGAAGGGATTTCATCGGAAGCTTGAGGTACTAATTACTTCTTTTGTACTTCCATTGTTTCTTTTTGTGAAGTTTGGTTTTAACTTATGTACCACTTGGTCTCTGTCCATCGTTCATTCCTTATTTCTTCGATGAACATAGAGAGATGCGCTTTTCCGGAAGAAGTATAATATTCACGTCTCTGGGAACAATGTTCCATCGCCACTTCAGAATTTTGCAGAGTTGAAAACAAGGTACTAAATTCTATACTAGCTGGATGTTTTTCTGTGTTCATACGTCATGATGATTTTTTTTTTTTTTAGCAATTCTAAATATCTTTTCCCCTTATAGGTTCTGATAAGTATGACTGAAGAATGATAATTATATGCTTTGCTTGCAGATATGAGTGCGACCCATACCTACTGCATAATCTTGTAGAACTTGGGTTTAAAGAGCCAACACCAATTCAAAGGCAGGCTATTCCAGTCCTCTTATCCGTATGATCTTCCATTACTATCTTACTGTGTGCAGTAAACTTCATCTTTCATGTGTTGTGTTCTAATGTATTGAGAATAAGATAGGATCTATTGTTGTGACCTGACAAGAACTGGGTATTTAGGTCGACTATTTTGGTATACTGTTTGGTTTTAGTTGTTTTTTTTTTTCTGATCAACGTTTTTCTTTATAGGGCCGTGAATGCTTTGCTTGTGCCCCTACTGGTTCTGGAAAAACCCTGGCTTTTCTGTGCCCTGTGATTATGAAACTGAAGGTCGTAGTCTTTTAAGTGCCATTTTTATATTTCTTGAATGGTGTTCTGTTCTGATCTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCAGGATCCATCGAGGAAGGCATCCGTGCAGTTATACTTTGTCCAACACGAGAATTAGCATCTCAGACAACAAGGGAGTGCAAAAAATTGGCTAAAGGGAAAAAATTCTCTATCAAGTTGGTTACAAAAGAAGTTATTAGACATGCTGATTTCTCAAAGTTCTCATGTGATGTACTCATATCCACTCCACTTAGGTTAAGACTTGCTATTCGGAAAAAGAAAATTGACCTCAGTAGGTAGGTGTTGACTAGGGGTATCAGCATGTTGTCAATACAAGACCAGCCTAAATATAACTCATCTCCTCATACAGGGTTCATTGTTTTTCAGGGTGGAGCACCTTGTTCTGGACGAATCTGATAAGTTATTTGAGCTTGGCTTGTTAAAACAGATCGACACCATTGTAAAAGCATGCTCCAATCCTTCAATAGTTCGCTCATTGTTTAGTGCTACTTTACCTGACTTTGTTGAGGATCTTGCTCGCTCAGTAATGCATGATGCTGTTCGGGTTATTGTTGGTAGGAAGTAAGTTCGCTACTATCATGCTCATCCCAAGATCATCGATTCACATGATATTCTTCTATGTTTTGAGAAAATAACTCCCATATTTCTGATACGTCAATAGGAATACCGCTTCTGCAACTGTCAAGCAAAAGTTGGTTTTTGCCGGAAGTGAAGAAGGGAAACTTCTTGCTCTTCGCCAAAGTTTTTCAGAGGTTCGTTTTTAGCATTCATGAACAAAAATCCTTTTTAGCATTCATTCATTGCATGAAATGTCAGCTTGGATCTAATTCCTGTATCTAGTAGTATACTTATCTGACATCTTTTGACAGTATTTGTTATTTTGATCTTACTAGACAATGCATTGACTTTGTTGCTTTTGTGCTTAACAGAGTTTGAATCCACCAATTCTGATCTTTGTGCAAAGCAAGGAGCGGGCAAAAGATCTTTATGGTGAACTGGCATTTGAGAATATCAAAGTGAATGTCATCCATTCCGACTTATCAGAGATAGAGGTAATCAATTCATCATCATCTGCTAAAATTTAATATTTCATGGCAGTTAAAAGTTGGTCAAAATGCCAAGAATACTACTCGTGCAAGTCTAGAATGGAGTCCGAAACAATAACAATGCGTAACAGCTTTAAATCCTTAACAACCTTCGTGAAGCCATATAATGAAGAACACGATATTAATCGTTGTACTCCTATGTGGGGCCTTGCACTCCTAAAAGATAGAACATAAAACAAAATGCTATAAAGTTTTTTGTTCTTACCTCTTTTATTGTTCTAGACCTGAGTTTGTTTAGTGAGCAATTGCTGAAAATATGAACTTTCTGCTAATTTTTATTTATCCATCACTTATTATATAATTATAAGGGGTCTATACAAGGGAACTACCATAGGATGGCCTAGTGATAAAATAGGGCAATGTAAATAATAAAGGGCTTAGTGAGAATGAGTTCAACTCATGGTAGCCACCTATCTAATATCTTACTAATGACCTTTGCAACCAAATATAGTATGGTCAAGTTATTTTCCCGTGAGAATAGTTTAGGTGCACGTAAGCTGATCTAGACGCTCATTGTGATGTCCCACATTGGTTAGGGAGGAGAACAAACCACCATTTATAAGGGATGTGGAAACCTTCCCCTAACAGACGCATTTTAAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGCCGTCACAATGGTATCAAAGCCAGACATTGGACGATGTGCTAGCCTTCTCGCTATTCTCCAAAGAGGGTAGACACGAGGCGGTGTGCCAGTAAGGACCCTGGGCTCCCAAAGGGGGGTGGATTTGGGGGCAGTCCCACATCGATTGGAGGAAGGAAAGAGTGCCAGCGAGGACGCTGGGCCATGAAGGGAGGTGGGTTGTGATGTTCCACGTTGGTTGGGGAGGAGAACAAATCACCATTTATAAGGGTGTGGAAACCTTTCCCTAGCAAACGCGTTTTAAAGCCCAAAAAGGACAATATCTGCTAGCGGTGGATCTGGGTCGTTACACTCATAGATGTAAACAAAAATCTATTCAAGGGACACATGGACTAGAAATGTTTCGTGTCTTTCTATGTCTGATATTCTTTCTTGAATGCAGCGGGAAAATGTTGTTTACGACTTCAGAGCTGGAAAAACTTGGGTGTTAATTGCCACTGATGTAATTGCTCGAGGAATGGATTTCAAAGGGGTTAACTGTGTAATCAATTATGACTTTCCAGATTCTGCCTCTGCATACATTCACCGGATTGGTATATTCCTTAACATTCTTCAGCTTACTTGACAATGAACCTTGTGTTTAATCCTTAAAACATGTTGAAAGATTCATACTCTATATGATGTGGCTGAGCCTAATTTGCATCTTTCAACAGGCCGTTCTGGCAGAGCAGGGAGGAGTGGAGAAGCCATTACATTTTATAACATAGGCCGAAAAGAGATTCAATCTCAAACAAACCAAAGGATGATGGTGACACCGAGCAGCCGAAAAAGAAGTCAAAAAAACGCAGGCCTAAAAGAGATTCAATCGTGACCAAACCAAATGGTGATGGTGACTCCGAGCTGCAGAAAAAGAAGTCGAAAAAACACAGGCTTGAAGGAGATTCAATCCAAAACAAACCAAAGGACGAAGGTGACACCGAGCAGCAGAAAAAGAAGTCGAAAAAACGCAAGCTTAAAAGAGATTCAATCTCAACCAAACCAAAGGATGATGGTGTCTCCAAACCACAGAAAAAGAAGTCGAAAAAAACAGAGGAGGCCTGA

mRNA sequence

TAGGGTTTTGGCGCCGACGATCAAATTCACGGCCCTGTTTTGCTAGGGTTTTGAAGCCGACGATCAAAAGGAGGTAATCTAGGTCGGTAGCTGAATTTAGGGATTCAAGTTTCTGAAAGTTTAAAGGAGAATACAATATTCGTGAGAGACGCAGATTTGTTAGCCCATTGTGATGGAGAAGGGGGCTTCTTTCTTGTTCGCTGGCATTCATTTTGACAAGAAGAGGTTCGCCGCAGATTTCTCTAGGTTCGAGGGCAAAAAAGAAAGTGATGATGTAATCGAAGGTTTGAGTAACATTGCTAATAGTGATTTCGAAGTAATTGAGGATTCAACGCATTCGGAGAAGAGGAAGAGGAAGAGGAAATCAGCGGCTACGGAATCGGTGGAGGGGTTCAGCGTCTTCAAGGATTCAAAACTAACTGTAGCTGCTTCAGTGAATGAGGAAAATCATCCATCTGAAAACGATCCTTCCGAAGAGAGGAAGGGATTTCATCGGAAGCTTGAGAGAGATGCGCTTTTCCGGAAGAAGTATAATATTCACGTCTCTGGGAACAATGTTCCATCGCCACTTCAGAATTTTGCAGAGTTGAAAACAAGATATGAGTGCGACCCATACCTACTGCATAATCTTGTAGAACTTGGGTTTAAAGAGCCAACACCAATTCAAAGGCAGGCTATTCCAGTCCTCTTATCCGGCCGTGAATGCTTTGCTTGTGCCCCTACTGGATCCATCGAGGAAGGCATCCGTGCAGTTATACTTTGTCCAACACGAGAATTAGCATCTCAGACAACAAGGGAGTGCAAAAAATTGGCTAAAGGGAAAAAATTCTCTATCAAGTTGGTTACAAAAGAAGTTATTAGACATGCTGATTTCTCAAAGTTCTCATGTGATGTACTCATATCCACTCCACTTAGGTTAAGACTTGCTATTCGGAAAAAGAAAATTGACCTCAGTAGGGTGGAGCACCTTGTTCTGGACGAATCTGATAAGTTATTTGAGCTTGGCTTGTTAAAACAGATCGACACCATTGTAAAAGCATGCTCCAATCCTTCAATAGTTCGCTCATTGTTTAGTGCTACTTTACCTGACTTTGTTGAGGATCTTGCTCGCTCAGTAATGCATGATGCTGTTCGGGTTATTGTTGGTAGGAAGAATACCGCTTCTGCAACTGTCAAGCAAAAGTTGGTTTTTGCCGGAAGTGAAGAAGGGAAACTTCTTGCTCTTCGCCAAAGTTTTTCAGAGAGTTTGAATCCACCAATTCTGATCTTTGTGCAAAGCAAGGAGCGGGCAAAAGATCTTTATGGTGAACTGGCATTTGAGAATATCAAAGTGAATGTCATCCATTCCGACTTATCAGAGATAGAGCGGGAAAATGTTGTTTACGACTTCAGAGCTGGAAAAACTTGGGTGTTAATTGCCACTGATGTAATTGCTCGAGGAATGGATTTCAAAGGGGTTAACTGTGTAATCAATTATGACTTTCCAGATTCTGCCTCTGCATACATTCACCGGATTGGCCGTTCTGGCAGAGCAGGGAGGAGTGGAGAAGCCATTACATTTTATAACATAGGCCGAAAAGAGATTCAATCTCAAACAAACCAAAGGATGATGAAAAAGAAGTCGAAAAAACACAGGCTTGAAGGAGATTCAATCCAAAACAAACCAAAGGACGAAGGTGACACCGAGCAGCAGAAAAAGAAGTCGAAAAAACGCAAGCTTAAAAGAGATTCAATCTCAACCAAACCAAAGGATGATGGTGTCTCCAAACCACAGAAAAAGAAGTCGAAAAAAACAGAGGAGGCCTGA

Coding sequence (CDS)

ATGGAGAAGGGGGCTTCTTTCTTGTTCGCTGGCATTCATTTTGACAAGAAGAGGTTCGCCGCAGATTTCTCTAGGTTCGAGGGCAAAAAAGAAAGTGATGATGTAATCGAAGGTTTGAGTAACATTGCTAATAGTGATTTCGAAGTAATTGAGGATTCAACGCATTCGGAGAAGAGGAAGAGGAAGAGGAAATCAGCGGCTACGGAATCGGTGGAGGGGTTCAGCGTCTTCAAGGATTCAAAACTAACTGTAGCTGCTTCAGTGAATGAGGAAAATCATCCATCTGAAAACGATCCTTCCGAAGAGAGGAAGGGATTTCATCGGAAGCTTGAGAGAGATGCGCTTTTCCGGAAGAAGTATAATATTCACGTCTCTGGGAACAATGTTCCATCGCCACTTCAGAATTTTGCAGAGTTGAAAACAAGATATGAGTGCGACCCATACCTACTGCATAATCTTGTAGAACTTGGGTTTAAAGAGCCAACACCAATTCAAAGGCAGGCTATTCCAGTCCTCTTATCCGGCCGTGAATGCTTTGCTTGTGCCCCTACTGGATCCATCGAGGAAGGCATCCGTGCAGTTATACTTTGTCCAACACGAGAATTAGCATCTCAGACAACAAGGGAGTGCAAAAAATTGGCTAAAGGGAAAAAATTCTCTATCAAGTTGGTTACAAAAGAAGTTATTAGACATGCTGATTTCTCAAAGTTCTCATGTGATGTACTCATATCCACTCCACTTAGGTTAAGACTTGCTATTCGGAAAAAGAAAATTGACCTCAGTAGGGTGGAGCACCTTGTTCTGGACGAATCTGATAAGTTATTTGAGCTTGGCTTGTTAAAACAGATCGACACCATTGTAAAAGCATGCTCCAATCCTTCAATAGTTCGCTCATTGTTTAGTGCTACTTTACCTGACTTTGTTGAGGATCTTGCTCGCTCAGTAATGCATGATGCTGTTCGGGTTATTGTTGGTAGGAAGAATACCGCTTCTGCAACTGTCAAGCAAAAGTTGGTTTTTGCCGGAAGTGAAGAAGGGAAACTTCTTGCTCTTCGCCAAAGTTTTTCAGAGAGTTTGAATCCACCAATTCTGATCTTTGTGCAAAGCAAGGAGCGGGCAAAAGATCTTTATGGTGAACTGGCATTTGAGAATATCAAAGTGAATGTCATCCATTCCGACTTATCAGAGATAGAGCGGGAAAATGTTGTTTACGACTTCAGAGCTGGAAAAACTTGGGTGTTAATTGCCACTGATGTAATTGCTCGAGGAATGGATTTCAAAGGGGTTAACTGTGTAATCAATTATGACTTTCCAGATTCTGCCTCTGCATACATTCACCGGATTGGCCGTTCTGGCAGAGCAGGGAGGAGTGGAGAAGCCATTACATTTTATAACATAGGCCGAAAAGAGATTCAATCTCAAACAAACCAAAGGATGATGAAAAAGAAGTCGAAAAAACACAGGCTTGAAGGAGATTCAATCCAAAACAAACCAAAGGACGAAGGTGACACCGAGCAGCAGAAAAAGAAGTCGAAAAAACGCAAGCTTAAAAGAGATTCAATCTCAACCAAACCAAAGGATGATGGTGTCTCCAAACCACAGAAAAAGAAGTCGAAAAAAACAGAGGAGGCCTGA

Protein sequence

MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEKRKRKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKGFHRKLERDALFRKKYNIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFACAPTGSIEEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKLVTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQIDTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASATVKQKLVFAGSEEGKLLALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVVYDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYNIGRKEIQSQTNQRMMKKKSKKHRLEGDSIQNKPKDEGDTEQQKKKSKKRKLKRDSISTKPKDDGVSKPQKKKSKKTEEA

Homology

[Close]

BLAST of Carg00996 vs. NCBI nr
Match: XP_022946645.1 (DEAD-box ATP-dependent RNA helicase 57 [Cucurbita moschata])

HSP 1 Score: 868.6 bits (2243), Expect = 1.1e-248
Identity = 476/534 (89.14%), Postives = 484/534 (90.64%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEKRK 60
           MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEKRK
Sbjct: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKGFHRKLERDALFRKKY 120
           RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERK FHRKLERDALFRKKY
Sbjct: 61  RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKEFHRKLERDALFRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNNVPSPLQNFAEL TRYECDPY+LHNLVELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFAELSTRYECDPYILHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGS-----------------IEEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240
           CAPTGS                  +EGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL
Sbjct: 181 CAPTGSGKTLAFLCPVLMKLKDPSKEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240

Query: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI 300
           VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDL RVEHLVLDESDKLFELGLLKQI
Sbjct: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLCRVEHLVLDESDKLFELGLLKQI 300

Query: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASATVKQKLVFAGS 360
           DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTAS TVKQKLVFAGS
Sbjct: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420
           EEGKLLALRQSFSESLNPP+LIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420

Query: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITF 480
           YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITF
Sbjct: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITF 480

Query: 481 Y---------NIGRK------EIQSQTNQRMMKKKSKKHRLEGDSIQNKPKDEG 503
           Y         NI         E+ S   + + KKK KKHR + DSI NKPKD+G
Sbjct: 481 YTDEDIPFLRNIANVMSASGCEVPSWITE-LQKKKWKKHRPKRDSISNKPKDDG 533

[Close]

BLAST of Carg00996 vs. NCBI nr
Match: XP_023540379.1 (DEAD-box ATP-dependent RNA helicase 57 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 860.1 bits (2221), Expect = 3.9e-246
Identity = 473/534 (88.58%), Postives = 483/534 (90.45%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEKRK 60
           MEKGASFLFAGIHFDKKRFAADFSRFEGKKESD+ IEGLS+IANSDFEVIEDST SEKRK
Sbjct: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDNGIEGLSSIANSDFEVIEDSTPSEKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKGFHRKLERDALFRKKY 120
           RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERK FHRKLERDALFRKKY
Sbjct: 61  RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKEFHRKLERDALFRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNNVPSPLQNFAEL TRYECDPY+LHNLVELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFAELSTRYECDPYILHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGS-----------------IEEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240
           CAPTGS                  +EGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL
Sbjct: 181 CAPTGSGKTLAFLCPVLMKLKDPSKEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240

Query: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI 300
           VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI
Sbjct: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI 300

Query: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASATVKQKLVFAGS 360
           DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTAS TVKQKLVFAGS
Sbjct: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420
           EEGKLLALRQSFSESLNPP+LIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420

Query: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITF 480
           YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITF
Sbjct: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITF 480

Query: 481 Y---------NIGRK------EIQSQTNQRMMKKKSKKHRLEGDSIQNKPKDEG 503
           Y         NI         E+ S   + + KKK KKHR + DSI NKPKD+G
Sbjct: 481 YTDEDIPFLRNIANVMSASGCEVPSWITE-LQKKKWKKHRPKRDSISNKPKDDG 533

[Close]

BLAST of Carg00996 vs. NCBI nr
Match: XP_023005802.1 (DEAD-box ATP-dependent RNA helicase 57 [Cucurbita maxima])

HSP 1 Score: 857.8 bits (2215), Expect = 2.0e-245
Identity = 471/534 (88.20%), Postives = 483/534 (90.45%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEKRK 60
           MEKGASFLFAGIHFDKKRFAADFSRFEGKKESD+ IEGLS+IANSDFEVIEDST SEKRK
Sbjct: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDNGIEGLSSIANSDFEVIEDSTPSEKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKGFHRKLERDALFRKKY 120
           RKRKSAATESVEGFSVF+DSKLTVAASVNEENHPSENDPSEERK FHRKLERDAL+RKKY
Sbjct: 61  RKRKSAATESVEGFSVFRDSKLTVAASVNEENHPSENDPSEERKEFHRKLERDALYRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNNVPSPLQNFAEL TRYECDPY+LHNLVELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFAELSTRYECDPYILHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGS-----------------IEEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240
           CAPTGS                  +EGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL
Sbjct: 181 CAPTGSGKTLAFLCPVLMKLKDPSKEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240

Query: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI 300
           VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI
Sbjct: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI 300

Query: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASATVKQKLVFAGS 360
           DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTAS TVKQKLVFAGS
Sbjct: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420
           EEGKLLALRQSFSESLNPP+LIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420

Query: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITF 480
           YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITF
Sbjct: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITF 480

Query: 481 Y---------NIGRK------EIQSQTNQRMMKKKSKKHRLEGDSIQNKPKDEG 503
           Y         NI         E+ S   + + KKK KKHR + DSI NKPKD+G
Sbjct: 481 YTDEDIPFLRNIANVMSASGCEVPSWITE-LQKKKWKKHRPKRDSISNKPKDDG 533

[Close]

BLAST of Carg00996 vs. NCBI nr
Match: XP_022145743.1 (DEAD-box ATP-dependent RNA helicase 57 [Momordica charantia])

HSP 1 Score: 787.3 bits (2032), Expect = 3.2e-224
Identity = 432/532 (81.20%), Postives = 459/532 (86.28%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEKRK 60
           MEKGASFLFAGIHFDKKRFAADFSRFEGK+ S++V EGLS+I N DFEV   ST SEKRK
Sbjct: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKGFHRKLERDALFRKKY 120
              KSAATESVEGFSVFKDSK   AASVNEENHP ENDPSEE+K F+RKLERDALFRKKY
Sbjct: 61  XXXKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNNVPSPLQNFAEL TR+ECD YL+ NLVELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGS-----------------IEEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240
           CAPTGS                  +E IRA ILCPT+ELASQTTRECK+LAKGKKF IK+
Sbjct: 181 CAPTGSGKTLAFVCPMLMKLKQPSKEAIRAAILCPTQELASQTTRECKRLAKGKKFRIKM 240

Query: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI 300
           VTKEV+RHADFSKFSCDVLISTPLRLRLAIRKKK+DLSRVE+LVLDESDKLFELGLLKQI
Sbjct: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQI 300

Query: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASATVKQKLVFAGS 360
           D+IVKACSNPSI+RSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTAS TVKQKLVFAGS
Sbjct: 301 DSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420
           EEGKLLALRQSFSESLNPP+LIFVQSKERAK+LYGELAFENI+VNVIHSDLS+IEREN V
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAV 420

Query: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITF 480
            DFRAGK+WVLIATDVIARGMDFKGVNCVINYDFPDSA+AYIHRIXXXXXXXXXXXAITF
Sbjct: 421 DDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIXXXXXXXXXXXAITF 480

Query: 481 Y---------NIGRKEIQSQTN-----QRMMKKKSKKHRLEGDSIQNKPKDE 502
           Y         NI      S         R+ KK+ KKHR + DSI  KPKD+
Sbjct: 481 YTEDDIPFLRNIANVMAASGCEVPSWISRLRKKRWKKHRPKRDSISTKPKDD 532

[Close]

BLAST of Carg00996 vs. NCBI nr
Match: XP_004137811.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 57 [Cucumis sativus] >XP_011651949.1 PREDICTED: DEAD-box ATP-dependent RNA helicase 57 [Cucumis sativus] >KGN58945.1 hypothetical protein Csa_3G736920 [Cucumis sativus])

HSP 1 Score: 785.0 bits (2026), Expect = 1.6e-223
Identity = 431/534 (80.71%), Postives = 461/534 (86.33%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEKRK 60
           MEKG SFLFAGIHFDKKRFAADF++FEGKKESD+V+EG S+I N D EV E ST S+KRK
Sbjct: 1   MEKGTSFLFAGIHFDKKRFAADFAKFEGKKESDNVVEGPSSIDNGDLEVHEGSTPSDKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKGFHRKLERDALFRKKY 120
           RKRKSA  +SVEGFSVFKDSK T   S+NEENH SENDPSEE+K F+RKLERDALFRKKY
Sbjct: 61  RKRKSATAKSVEGFSVFKDSKSTADTSLNEENHLSENDPSEEKKEFYRKLERDALFRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNNVPSPLQNF EL TRY+CD YLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFGELSTRYDCDSYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGS-----------------IEEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240
           CAPTGS                  +EGIRAVILCPTRELASQT RECKKLAKGKKF IKL
Sbjct: 181 CAPTGSGKTLAFVCPMLMRLKDPSKEGIRAVILCPTRELASQTIRECKKLAKGKKFHIKL 240

Query: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI 300
           VTKEV+RHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVE+LVLDESDKLFELGL+KQI
Sbjct: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEYLVLDESDKLFELGLIKQI 300

Query: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASATVKQKLVFAGS 360
           D +VKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTAS TVKQKLVFAGS
Sbjct: 301 DAVVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420
           EEGKLLALRQSFSESLNPP+LIFVQSKERAK+LYGELAFENI+V+VIHSDLS++ERENVV
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVSVIHSDLSQLERENVV 420

Query: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITF 480
            DFRAGKTWVLIATDVI+RGMDFKGVNCVINYDFPDSA+AYIHRIXXXXXXXXXXXAITF
Sbjct: 421 DDFRAGKTWVLIATDVISRGMDFKGVNCVINYDFPDSAAAYIHRIXXXXXXXXXXXAITF 480

Query: 481 Y---------NIGRK------EIQSQTNQRMMKKKSKKHRLEGDSIQNKPKDEG 503
           Y         NI         E+ S   + + K K KKHR + DSI  KP ++G
Sbjct: 481 YTDEDIPFLRNIANVMSASGCEVPSWITE-LRKMKWKKHRPKRDSISTKPHEDG 533

[Close]

BLAST of Carg00996 vs. TAIR10
Match: AT3G09720.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 557.8 bits (1436), Expect = 7.6e-159
Identity = 326/533 (61.16%), Postives = 372/533 (69.79%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEKRK 60
           MEK + FLF G +F+KK+FA DF++F+                                 
Sbjct: 1   MEKSSYFLFGGTNFNKKKFAPDFAKFKNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  RKRKSAATE---SVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKGFHRKLERDALFR 120
                        VEGF VFK SK   A    EE           +K  +R++ERDAL R
Sbjct: 61  XXXXXXXXXXXVPVEGFDVFKSSKKARAKGKAEEQITKNEIVENPKKELNRQMERDALSR 120

Query: 121 KKYNIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVLLSGRE 180
           K+Y+IHVSGNN+P PL++FAEL +RY C+ Y+L NL ELGFKEPTPIQRQAIP+LLSGRE
Sbjct: 121 KQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRE 180

Query: 181 CFACAPTGS-----------------IEEGIRAVILCPTRELASQTTRECKKLAKGKKFS 240
           CFACAPTGS                   +GIRAVIL P RELA+QT RE KKL KG  F 
Sbjct: 181 CFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTAREGKKLIKGSNFH 240

Query: 241 IKLVTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLL 300
           I+L+TK +++ ADFSK  CDVLISTP+RL+ AI+ KKIDLS+VE+LVLDESDKLFE  LL
Sbjct: 241 IRLMTKPLVKTADFSKLWCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLL 300

Query: 301 KQIDTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASATVKQKLVF 360
           KQID +VKACSNPSI+RSLFSATLPD VE+LARS+MHDAVRVI+GRKNTAS TVKQKLVF
Sbjct: 301 KQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVF 360

Query: 361 AGSEEGKLLALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERE 420
           AGSEEGKLLALRQSF+ESLNPP+LIFVQSKERAK+LY EL  ENI+  VIHSDL   ERE
Sbjct: 361 AGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERE 420

Query: 421 NVVYDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXA 480
           N V  FRAG+ WVLIATDVIARGMDFKG+NCVINYDFPDSASAYIHRIXXXXXXXXXXXA
Sbjct: 421 NAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIXXXXXXXXXXXA 480

Query: 481 ITFY---------NIGRKEIQSQTN-----QRMMKKKSKKHRLEGDSIQNKPK 500
           ITFY         NI    + S          + KKK +KHR   DSI  KPK
Sbjct: 481 ITFYTEQDVPFLRNIANTMMSSGCEVPSWIMSLKKKKWRKHRPRRDSISTKPK 533

[Close]

BLAST of Carg00996 vs. TAIR10
Match: AT2G47330.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 179.9 bits (455), Expect = 4.3e-45
Identity = 119/380 (31.32%), Postives = 189/380 (49.74%), Query Frame = 0


Query: 94  PSENDPSEERKGFHRKLERDAL-FRKKYNIHVSGNNVPSPLQNFAELKTRYECDPYLLHN 153
           P   D  EE +      E++   +R++  I VSG +V  P++ F +     +    ++  
Sbjct: 187 PINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ----IMSA 246

Query: 154 LVELGFKEPTPIQRQAIPVLLSGRECFACAPTGS---------------------IEEGI 213
           + +  +++PT IQ QA+P++LSGR+    A TGS                      +EG 
Sbjct: 247 IKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGP 306

Query: 214 RAVILCPTRELASQTTRECKKLAKGKKFSIKLVTKEVIRHADFS--KFSCDVLISTPLRL 273
             VI  PTRELA Q   E KK +K     +  V   + +H  F   K  C+++++TP RL
Sbjct: 307 IGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRL 366

Query: 274 RLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQIDTIVKACSNPSIVRSLFSATLPDFVE 333
              ++ K + + R  +LVLDE+D++F+LG   Q+ +IV     P     LFSAT+P  VE
Sbjct: 367 IDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQI-RPDRQTLLFSATMPWKVE 426

Query: 334 DLARSVMHDAVRVIVGRKNTASATVKQKLVFAGSEEGKLLALRQSFSESLNP-PILIFVQ 393
            LAR ++ D +RV VG    A+  + Q +    S+  KL  L +     ++   +L+F  
Sbjct: 427 KLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLVFAS 486

Query: 394 SKERAKDLYGELAFENIKVNVIHSDLSEIERENVVYDFRAGKTWVLIATDVIARGMDFKG 449
            K    ++  +L   + KV  +H D  +  R   +  F++G   VLIATDV ARG+D K 
Sbjct: 487 KKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKS 546

[Close]

BLAST of Carg00996 vs. TAIR10
Match: AT2G42520.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 176.8 bits (447), Expect = 3.6e-44
Identity = 145/437 (33.18%), Postives = 216/437 (49.43%), Query Frame = 0


Query: 91  ENHPSENDPSEERKGFHRK----LERDALFRKKYNIHVSGNNVPSPLQNFAELKTRYECD 150
           E +P END SE    F  +    +  DA   +   I  SG+NVP P+  FAE+    +  
Sbjct: 114 EVNPFENDDSEPEPAFTEQDNTVINFDAY--EDIPIETSGDNVPPPVNTFAEI----DLG 173

Query: 151 PYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFACAPTGS---------IEEGIR----- 210
             L  N+    + +PTP+QR AIP+LL GR+  ACA TGS         I  GI      
Sbjct: 174 EALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHV 233

Query: 211 ------------AVILCPTRELASQTTRECKKLA--KGKKFSIKLVTKEVIRHADFSKFS 270
                       AVIL PTRELASQ   E KK +   G K  +      + +     +  
Sbjct: 234 QRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERG 293

Query: 271 CDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQIDTIVKACSNPSI-VR 330
            D+L++TP RL   + + ++ +  +  L LDE+D++ ++G   QI  IV+    P   VR
Sbjct: 294 VDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVR 353

Query: 331 S--LFSATLPDFVEDLARSVMHDAVRVIVGRKNTASATVKQKLVFAGSEEGK------LL 390
              LFSAT P  ++ LA   + + + + VGR  +++  + Q++ F    + +      L 
Sbjct: 354 QTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLH 413

Query: 391 ALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVVYDFRAG 450
           A R++  +      L+FV++K  A  L   L         IH D ++ ERE  +  F++G
Sbjct: 414 AQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSG 473

Query: 451 KTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITFYNIGR- 480
           +T +L+ATDV ARG+D   V  V+N+D P+    Y+HRI XXXXXXXXX A  F+N G  
Sbjct: 474 RTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGXXXXXXXXXLATAFFNDGNT 533

[Close]

BLAST of Carg00996 vs. TAIR10
Match: AT3G58570.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 176.8 bits (447), Expect = 3.6e-44
Identity = 124/381 (32.55%), Postives = 188/381 (49.34%), Query Frame = 0


Query: 122 IHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFAC 181
           I  SG+NVP P+  FAE+    +    L  N+    + +PTP+QR AIP+L +GR+  AC
Sbjct: 134 IETSGDNVPPPVNTFAEI----DLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMAC 193

Query: 182 APTGS-------------------IE--EGIR-----AVILCPTRELASQTTRECKKLA- 241
           A TGS                   IE   G+R     AVIL PTRELA Q   E +K + 
Sbjct: 194 AQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSY 253

Query: 242 -KGKKFSIKLVTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDK 301
             G K  +      V +     +   D+L++TP RL   + + ++ L  V  L LDE+D+
Sbjct: 254 QTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADR 313

Query: 302 LFELGLLKQIDTIVKACSNPSI-VRS--LFSATLPDFVEDLARSVMHDAVRVIVGRKNTA 361
           + ++G   QI  IV+    P   VR   LFSAT P  ++ LA   + + + + VGR  ++
Sbjct: 314 MLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSS 373

Query: 362 SATVKQKLVFAGSEEGK------LLALRQSFSESLNPPILIFVQSKERAKDLYGELAFEN 421
           +  + Q++ F    + +      L A R++ ++      L+FV++K+ A  L   L    
Sbjct: 374 TDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCING 433

Query: 422 IKVNVIHSDLSEIERENVVYDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAY 466
                IH D S+ ERE  +  F+ G+T +L+ATDV ARG+D   V  V+N+D P+    Y
Sbjct: 434 FPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 493

[Close]

BLAST of Carg00996 vs. TAIR10
Match: AT5G51280.1 (DEAD-box protein abstrakt, putative)

HSP 1 Score: 176.8 bits (447), Expect = 3.6e-44
Identity = 121/392 (30.87%), Postives = 197/392 (50.26%), Query Frame = 0


Query: 111 ERDALFRKKYNIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIP 170
           +RD L RK+++I V+G+++P P++NF ++K        +L  L E G  +PTPIQ Q +P
Sbjct: 124 QRD-LIRKQWHIIVNGDDIPPPIKNFKDMKFPRP----VLDTLKEKGIVQPTPIQVQGLP 183

Query: 171 VLLSGRECFACAPTGS------------------------IEEGIRAVILCPTRELASQT 230
           V+L+GR+    A TGS                          EG   +I+CP+RELA QT
Sbjct: 184 VILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQT 243

Query: 231 TRECKKLA--------KGKKFSIKLVTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKI 290
               ++             +  + +   ++    +  K    ++++TP RL+  + KKK+
Sbjct: 244 YEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 303

Query: 291 DLSRVEHLVLDESDKLFELGLLKQIDTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHD 350
            L    +L LDE+D+L +LG    I  +     +      LFSAT+P  ++  ARS +  
Sbjct: 304 SLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQR-QTLLFSATMPTKIQIFARSALVK 363

Query: 351 AVRVIVGRKNTASATVKQKLVFAGSEEGKLLALRQSFSESLNPPILIFVQSKERAKDLYG 410
            V V VGR   A+  V Q++ +   +E K++ L +   ++ +PP+LIF ++K    D++ 
Sbjct: 364 PVTVNVGRAGAANLDVIQEVEYV-KQEAKIVYLLECLQKT-SPPVLIFCENKADVDDIHE 423

Query: 411 ELAFENIKVNVIHSDLSEIERENVVYDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFP 470
            L  + ++   IH    + +RE  +  F+AGK  VL+ATDV ++G+DF  +  VINYD P
Sbjct: 424 YLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP 483

[Close]

BLAST of Carg00996 vs. Swiss-Prot
Match: sp|Q84TG1|RH57_ARATH (DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana OX=3702 GN=RH57 PE=2 SV=1)

HSP 1 Score: 557.8 bits (1436), Expect = 1.4e-157
Identity = 326/533 (61.16%), Postives = 372/533 (69.79%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEKRK 60
           MEK + FLF G +F+KK+FA DF++F+                                 
Sbjct: 1   MEKSSYFLFGGTNFNKKKFAPDFAKFKNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  RKRKSAATE---SVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKGFHRKLERDALFR 120
                        VEGF VFK SK   A    EE           +K  +R++ERDAL R
Sbjct: 61  XXXXXXXXXXXVPVEGFDVFKSSKKARAKGKAEEQITKNEIVENPKKELNRQMERDALSR 120

Query: 121 KKYNIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVLLSGRE 180
           K+Y+IHVSGNN+P PL++FAEL +RY C+ Y+L NL ELGFKEPTPIQRQAIP+LLSGRE
Sbjct: 121 KQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRE 180

Query: 181 CFACAPTGS-----------------IEEGIRAVILCPTRELASQTTRECKKLAKGKKFS 240
           CFACAPTGS                   +GIRAVIL P RELA+QT RE KKL KG  F 
Sbjct: 181 CFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTAREGKKLIKGSNFH 240

Query: 241 IKLVTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLL 300
           I+L+TK +++ ADFSK  CDVLISTP+RL+ AI+ KKIDLS+VE+LVLDESDKLFE  LL
Sbjct: 241 IRLMTKPLVKTADFSKLWCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLL 300

Query: 301 KQIDTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASATVKQKLVF 360
           KQID +VKACSNPSI+RSLFSATLPD VE+LARS+MHDAVRVI+GRKNTAS TVKQKLVF
Sbjct: 301 KQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVF 360

Query: 361 AGSEEGKLLALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERE 420
           AGSEEGKLLALRQSF+ESLNPP+LIFVQSKERAK+LY EL  ENI+  VIHSDL   ERE
Sbjct: 361 AGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERE 420

Query: 421 NVVYDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXA 480
           N V  FRAG+ WVLIATDVIARGMDFKG+NCVINYDFPDSASAYIHRIXXXXXXXXXXXA
Sbjct: 421 NAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIXXXXXXXXXXXA 480

Query: 481 ITFY---------NIGRKEIQSQTN-----QRMMKKKSKKHRLEGDSIQNKPK 500
           ITFY         NI    + S          + KKK +KHR   DSI  KPK
Sbjct: 481 ITFYTEQDVPFLRNIANTMMSSGCEVPSWIMSLKKKKWRKHRPRRDSISTKPK 533

[Close]

BLAST of Carg00996 vs. Swiss-Prot
Match: sp|Q5K5B6|RH57_ORYSJ (DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0647900 PE=2 SV=2)

HSP 1 Score: 546.6 bits (1407), Expect = 3.2e-154
Identity = 315/542 (58.12%), Postives = 389/542 (71.77%), Query Frame = 0


Query: 1   MEKG--ASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEK 60
           MEK   +S LFAG HFD+KRFA DF+RF     + DV                       
Sbjct: 1   MEKAKLSSALFAGTHFDRKRFAGDFARFRQGPPAPDVAXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  RKRKRKSA--ATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEE------RKGFHRKL 120
                  A  A+++VEGFSVFK   L      ++     E   SE+      RK   R++
Sbjct: 61  XXXXXXXADSASDAVEGFSVFKG--LAAKKDEDDSEKKVETGKSEDSEVVRRRKEVEREI 120

Query: 121 ERDALFRKKYNIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIP 180
           ER A+ RKK++IH+SG NVP+PL+NF EL +RY CD YL+ NL +LGF+EPTPIQRQAIP
Sbjct: 121 ERAAILRKKFDIHISGQNVPAPLENFEELVSRYGCDSYLVGNLSKLGFQEPTPIQRQAIP 180

Query: 181 VLLSGRECFACAPTGS-----------------IEEGIRAVILCPTRELASQTTRECKKL 240
           +LLSGRECFACAPTGS                  +EG++AVILCPTRELA+QTTRECKKL
Sbjct: 181 ILLSGRECFACAPTGSGKTLAFLFPILMKIKPGSKEGVKAVILCPTRELAAQTTRECKKL 240

Query: 241 AKGKKFSIKLVTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDK 300
           AKG+KF IKL+TK++ +  +F    CD+LISTPLRL  A++K+ +DLSRVE+LVLDESDK
Sbjct: 241 AKGRKFYIKLMTKDLSKSGNFKDMHCDILISTPLRLDHAVQKRDLDLSRVEYLVLDESDK 300

Query: 301 LFELGLLKQIDTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASAT 360
           LFELG ++ ID++VKACSNPSI+RSLFSATLPD +E LAR++MHDAVRVIVGRKN+AS+ 
Sbjct: 301 LFELGFVEVIDSVVKACSNPSIIRSLFSATLPDSIETLARTIMHDAVRVIVGRKNSASSL 360

Query: 361 VKQKLVFAGSEEGKLLALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSD 420
           +KQKL+FAG+E+GKLLALRQSF+ESLNPP+LIFVQSKERAK+LY ELAF++++ +VIH+D
Sbjct: 361 IKQKLIFAGTEKGKLLALRQSFAESLNPPVLIFVQSKERAKELYKELAFDDVRADVIHAD 420

Query: 421 LSEIERENVVYDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXX 480
           L E +R++ V + RAGKTWVLIAT+VIARGMDFKGVNCVINYDFP+SASAYIHRIXXXXX
Sbjct: 421 LDEEQRQDAVDNLRAGKTWVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIXXXXX 480

Query: 481 XXXXXXAITFY---------NIGRKEIQSQTN-----QRMMKKKSKKHRLEGDSIQNKPK 502
           XXXXXXAITF+         NI    I S        + + K K KKHR+  D I   P 
Sbjct: 481 XXXXXXAITFFTEEDKPFLRNIANVLISSGCEVPSWIKALPKLKRKKHRVNRDPISTLPD 540

[Close]

BLAST of Carg00996 vs. Swiss-Prot
Match: sp|Q86IZ9|DDX52_DICDI (Probable ATP-dependent RNA helicase ddx52 OS=Dictyostelium discoideum OX=44689 GN=ddx52 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 4.2e-90
Identity = 168/353 (47.59%), Postives = 238/353 (67.42%), Query Frame = 0


Query: 114 ALFRKKYNIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVLL 173
           A FR K+ I V G ++P P+  F++L+ R++   YLL+N+ E+G+KEP+PIQ Q IP+LL
Sbjct: 175 ATFRNKHRIKVDGTDIPDPMTEFSQLENRFKVRKYLLNNINEIGYKEPSPIQMQVIPILL 234

Query: 174 SGRECFACAPTGS-----------------IEEGIRAVILCPTRELASQTTRECKKLAKG 233
             RE  A APTGS                  +EG R+VI+ PTRELA Q  R  + L+KG
Sbjct: 235 KEREVVAIAPTGSGKTASFSIPILQALYEPKKEGFRSVIIAPTRELAQQIYRNFRLLSKG 294

Query: 234 KKFSIKLVTKEVIRHADFSKF--SCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKL 293
           K F I +++K +   +       + D+LI+TPLRL   I++  + L++VE+LV DE+DKL
Sbjct: 295 KPFRICVLSKNLHNQSTNENLIKNYDILITTPLRLVYLIKENLLSLNKVEYLVFDEADKL 354

Query: 294 FELGLLKQIDTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASATV 353
           F+    +Q+D +V AC NP +   LFSAT+   VE+L  S+M + +++I+G +N A+ TV
Sbjct: 355 FDKNFQEQVDIVVTACQNPKLKICLFSATMNQQVEELGHSIMKNPIKIIIGEQNAAAITV 414

Query: 354 KQKLVFAGSEEGKLLALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDL 413
            QKL++ G EEGKLLA+RQ   + L PPILIF QSKERA DL+ EL F+ I V+VIHS+ 
Sbjct: 415 DQKLIYVGKEEGKLLAVRQLIQKGLEPPILIFTQSKERAHDLFQELIFDGINVDVIHSER 474

Query: 414 SEIERENVVYDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHR 448
           ++ +R+ +V  FR GK WVLI T+++ARGMDFKGVN VIN+DFP + ++YIHR
Sbjct: 475 TQFQRDTIVKKFRMGKIWVLICTELMARGMDFKGVNFVINFDFPHTLASYIHR 527

[Close]

BLAST of Carg00996 vs. Swiss-Prot
Match: sp|Q6BP45|ROK1_DEBHA (ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=ROK1 PE=3 SV=2)

HSP 1 Score: 320.9 bits (821), Expect = 2.8e-86
Identity = 168/356 (47.19%), Postives = 236/356 (66.29%), Query Frame = 0


Query: 117 RKKYNIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVLLSGR 176
           RK     VSG ++P P+ +F +L  RY+ D  LL NL++ GF EPTPIQ +AIP+ L GR
Sbjct: 93  RKLNKSKVSGEDIPLPIGSFEDLIGRYKLDKKLLSNLIDAGFTEPTPIQDEAIPISLEGR 152

Query: 177 ECFACAPTGSIEE---------------------GIRAVILCPTRELASQTTRECKKLAK 236
           +  ACAPTGS +                      GIR +I+ PT ELA Q  +E   + K
Sbjct: 153 DLIACAPTGSGKTLAFLIPLVQTILQSNPNVKNYGIRGLIISPTNELAVQIFQELNTMTK 212

Query: 237 GKKFSIKLVTKEV---IRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESD 296
           GKK  I +++K++   I +   +    D+L+STPLRL  +I+ + I LS+VE LV+DE+D
Sbjct: 213 GKKMKIGILSKQLANKINNKIINSSKYDILVSTPLRLIDSIKNETISLSKVEQLVIDETD 272

Query: 297 KLFELGLLKQIDTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASA 356
           KLF+ G ++Q D I+  C+N  + +S+FSAT+P  VE++A+S+M D +RVI+G K  AS 
Sbjct: 273 KLFDQGFVEQTDEILSNCTNTKLRKSMFSATIPSGVEEMAQSIMKDPIRVIIGHKEAASN 332

Query: 357 TVKQKLVFAGSEEGKLLALRQSFSE-SLNPPILIFVQSKERAKDLYGELAFENIKVNVIH 416
           T++QKLVF G+EEGKLLA+RQ   +    PPI+IF+QS  RAK L+ EL ++ + V+VIH
Sbjct: 333 TIEQKLVFTGNEEGKLLAIRQMIQQGEFKPPIIIFLQSITRAKALFHELLYDRLNVDVIH 392

Query: 417 SDLSEIERENVVYDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHR 448
           ++ +  +R+ V+  F++G  WVLI TDVIARG+DFKGVN VINYD P SA AY+HR
Sbjct: 393 AERTPKQRDEVIKRFKSGDIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHR 448

[Close]

BLAST of Carg00996 vs. Swiss-Prot
Match: sp|Q6FN65|ROK1_CANGA (ATP-dependent RNA helicase ROK1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=ROK1 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 3.7e-86
Identity = 179/406 (44.09%), Postives = 269/406 (66.26%), Query Frame = 0


Query: 90  EENHPSENDPSEERKGFHRKL---ERDALFRKKYNIHVSGNNVPSPLQNFAELKTRYECD 149
           E++H  +N+       +  K+   E+ +  RK Y  +++G ++P P+ +F +L +R+  D
Sbjct: 73  EDSHQQDNNDDVTEVAYDVKITTKEQASALRKSYKGNITGEDIPLPIGSFEDLISRFSLD 132

Query: 150 PYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFACAPTGS--------------IEE--- 209
             LL+NL+E  F EPTPIQ +AIP+ L+GR+  ACAPTGS              IEE   
Sbjct: 133 KRLLNNLIENHFTEPTPIQCEAIPLCLNGRDLLACAPTGSGKTLAFLIPLLQQIIEEKNF 192

Query: 210 -GIRAVILCPTRELASQTTRECKKLA------KGKKFSIKLVTKEV---IRHADFSKFSC 269
            G++ +I+ PT+ELA+Q   EC KL+      K +   + +++K +   +R+   S    
Sbjct: 193 SGVKGLIISPTKELATQIFNECVKLSKRIYLDKKRPLQVAILSKSLGAKLRNKVISDKKY 252

Query: 270 DVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQIDTIVKACSNPSIVRSL 329
           D++ISTPLRL   ++ + +DLS V+HL+ DE+DKLF+   ++Q D I+ +C++PS+ +S+
Sbjct: 253 DLIISTPLRLIDVVKNEALDLSNVKHLIFDEADKLFDKTFIEQTDDILNSCTDPSMRKSM 312

Query: 330 FSATLPDFVEDLARSVMHDAVRVIVGRKNTASATVKQKLVFAGSEEGKLLALRQSFSE-S 389
           FSAT+P  VE+ A S+M+D VRVI+G K  A+  ++QKL+F G+EEGKL+A+RQ   +  
Sbjct: 313 FSATIPSSVEETANSIMNDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQQGE 372

Query: 390 LNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVVYDFRAGKTWVLIATD 449
             PPI+IF++S  RAK LY EL ++ I V+VIH++ + I+RE ++  F+ G+ W LI TD
Sbjct: 373 FKPPIIIFLESIARAKALYHELMYDRINVDVIHAERTAIQREKIIERFKTGELWCLICTD 432

Query: 450 VIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITFY 465
           V+ARG+DFKGVN VINYD P +A AY+HRI XXXXXXXXXX +T Y
Sbjct: 433 VLARGIDFKGVNLVINYDVPTTAQAYVHRIGXXXXXXXXXXXVTLY 478

[Close]

BLAST of Carg00996 vs. TrEMBL
Match: tr|A0A0A0LAD5|A0A0A0LAD5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736920 PE=4 SV=1)

HSP 1 Score: 785.0 bits (2026), Expect = 1.1e-223
Identity = 431/534 (80.71%), Postives = 461/534 (86.33%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEKRK 60
           MEKG SFLFAGIHFDKKRFAADF++FEGKKESD+V+EG S+I N D EV E ST S+KRK
Sbjct: 1   MEKGTSFLFAGIHFDKKRFAADFAKFEGKKESDNVVEGPSSIDNGDLEVHEGSTPSDKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKGFHRKLERDALFRKKY 120
           RKRKSA  +SVEGFSVFKDSK T   S+NEENH SENDPSEE+K F+RKLERDALFRKKY
Sbjct: 61  RKRKSATAKSVEGFSVFKDSKSTADTSLNEENHLSENDPSEEKKEFYRKLERDALFRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNNVPSPLQNF EL TRY+CD YLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFGELSTRYDCDSYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGS-----------------IEEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240
           CAPTGS                  +EGIRAVILCPTRELASQT RECKKLAKGKKF IKL
Sbjct: 181 CAPTGSGKTLAFVCPMLMRLKDPSKEGIRAVILCPTRELASQTIRECKKLAKGKKFHIKL 240

Query: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI 300
           VTKEV+RHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVE+LVLDESDKLFELGL+KQI
Sbjct: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEYLVLDESDKLFELGLIKQI 300

Query: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASATVKQKLVFAGS 360
           D +VKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTAS TVKQKLVFAGS
Sbjct: 301 DAVVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420
           EEGKLLALRQSFSESLNPP+LIFVQSKERAK+LYGELAFENI+V+VIHSDLS++ERENVV
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVSVIHSDLSQLERENVV 420

Query: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITF 480
            DFRAGKTWVLIATDVI+RGMDFKGVNCVINYDFPDSA+AYIHRIXXXXXXXXXXXAITF
Sbjct: 421 DDFRAGKTWVLIATDVISRGMDFKGVNCVINYDFPDSAAAYIHRIXXXXXXXXXXXAITF 480

Query: 481 Y---------NIGRK------EIQSQTNQRMMKKKSKKHRLEGDSIQNKPKDEG 503
           Y         NI         E+ S   + + K K KKHR + DSI  KP ++G
Sbjct: 481 YTDEDIPFLRNIANVMSASGCEVPSWITE-LRKMKWKKHRPKRDSISTKPHEDG 533

[Close]

BLAST of Carg00996 vs. TrEMBL
Match: tr|A0A1S3B6W1|A0A1S3B6W1_CUCME (DEAD-box ATP-dependent RNA helicase 57 OS=Cucumis melo OX=3656 GN=LOC103486464 PE=4 SV=1)

HSP 1 Score: 778.9 bits (2010), Expect = 7.6e-222
Identity = 428/534 (80.15%), Postives = 459/534 (85.96%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEKRK 60
           MEKG SFLFAGIHF+KKRFAADF+RFEGKKESD+V+EG S+I N   EV E ST S+KRK
Sbjct: 1   MEKGTSFLFAGIHFNKKRFAADFARFEGKKESDNVVEGPSSIGNGVLEVHEGSTPSDKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKGFHRKLERDALFRKKY 120
           RKRKS   +SVEGFSVFKDSK T  ASVNEENH SENDPS E+K F+RKLERDALFRKKY
Sbjct: 61  RKRKSETAKSVEGFSVFKDSKSTADASVNEENHLSENDPSNEKKEFYRKLERDALFRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNN+ SPLQNF EL TRY+CD YLLHNL+ELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNITSPLQNFGELSTRYDCDSYLLHNLIELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGS-----------------IEEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240
           CAPTGS                  +EGIRAVILCPTRELASQTTRECKKLAKGKKF IKL
Sbjct: 181 CAPTGSGKTLAFVCPMLMRLKDPSKEGIRAVILCPTRELASQTTRECKKLAKGKKFHIKL 240

Query: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI 300
           VTKEV+RHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVE+LVLDESDKLFELGL+KQI
Sbjct: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEYLVLDESDKLFELGLIKQI 300

Query: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASATVKQKLVFAGS 360
           DT+VKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTAS TVKQKLVFAGS
Sbjct: 301 DTVVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420
           EEGKLLALRQSFSESLNPP+LIFVQSKERAK+LY ELAFENI+V+VIHSDLS++ERENVV
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYAELAFENIRVSVIHSDLSQLERENVV 420

Query: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITF 480
            DFRAGKTWVLIATDVI+RGMDFKGVNCVINYDFPDSA+AYIHRIXXXXXXXXXXXAITF
Sbjct: 421 DDFRAGKTWVLIATDVISRGMDFKGVNCVINYDFPDSAAAYIHRIXXXXXXXXXXXAITF 480

Query: 481 Y---------NIGRK------EIQSQTNQRMMKKKSKKHRLEGDSIQNKPKDEG 503
           Y         NI         E+ S   + + K K KKHR + DSI  KP ++G
Sbjct: 481 YTDEDIPFLRNIANVMSASGCEVPSWITE-LRKMKWKKHRPKRDSISTKPNEDG 533

[Close]

BLAST of Carg00996 vs. TrEMBL
Match: tr|F6HR01|F6HR01_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g02300 PE=4 SV=1)

HSP 1 Score: 642.9 bits (1657), Expect = 6.5e-181
Identity = 357/532 (67.11%), Postives = 418/532 (78.57%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEKRK 60
           MEKG SFLF+GI FDKK+FAADFSRF+ KKESDD++E   + A      +        +K
Sbjct: 1   MEKGTSFLFSGITFDKKKFAADFSRFKEKKESDDLVESGKSEAEEGARPV--------KK 60

Query: 61  RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKGFHRKLERDALFRKKY 120
           RKRK+   + VEGF+VFK SK   +A   ++N   +++ S+ +K  +R++ERDAL RKK+
Sbjct: 61  RKRKATVADPVEGFNVFKTSK--SSAQGIQQNDQEKSELSQAKKELNRQIERDALLRKKH 120

Query: 121 NIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
            IH+SGNNVPSPL+NF+EL +RY C+ YLLHNL ELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 KIHISGNNVPSPLENFSELSSRYGCESYLLHNLAELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGS-----------------IEEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240
           CAPTGS                  ++GIRAVILCPTRELA+QT RE KKLAKGKKF IKL
Sbjct: 181 CAPTGSGKTLAFVCPMLMKLKHASKDGIRAVILCPTRELAAQTARESKKLAKGKKFYIKL 240

Query: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI 300
           +TKE++R  D SK  CD+LISTPLRLR AIRKKK+DLSRVE+LVLDESDKLFELGL+KQI
Sbjct: 241 LTKELLRSGDISKLPCDILISTPLRLRSAIRKKKLDLSRVEYLVLDESDKLFELGLVKQI 300

Query: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASATVKQKLVFAGS 360
           D +VKACSNPSI+RSLFSATLPDFVE+LAR++MHDAVRVI+GRKN+AS  +KQKLVFAGS
Sbjct: 301 DAVVKACSNPSIIRSLFSATLPDFVEELARTIMHDAVRVIIGRKNSASELIKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420
           EEGKLLALRQSF+ESLNPPIL+FVQSKERAK+LY ELAF++I+V+VIH+DLS+ +REN V
Sbjct: 361 EEGKLLALRQSFAESLNPPILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAV 420

Query: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITF 480
            DFRAGKTWVLIATDVIARGMDFKG+NCVINYDFPDS +AYIHR XXXXXXXXXXXAIT 
Sbjct: 421 DDFRAGKTWVLIATDVIARGMDFKGINCVINYDFPDSPAAYIHRXXXXXXXXXXXXAITI 480

Query: 481 Y---------NIGRKEIQSQTN-----QRMMKKKSKKHRLEGDSIQNKPKDE 502
           Y         NI      S          + K K KKHR + DSI  KPKD+
Sbjct: 481 YTEDDVPFLRNIANVMAASGCEVPSWIMALPKLKWKKHRPQRDSISTKPKDQ 522

[Close]

BLAST of Carg00996 vs. TrEMBL
Match: tr|A0A1U8A2F8|A0A1U8A2F8_NELNU (DEAD-box ATP-dependent RNA helicase 57 OS=Nelumbo nucifera OX=4432 GN=LOC104596401 PE=4 SV=1)

HSP 1 Score: 639.0 bits (1647), Expect = 9.4e-180
Identity = 353/532 (66.35%), Postives = 421/532 (79.14%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEKRK 60
           MEK +SFLF+GI FD+K+FA+D +RF+ KKE+ +  E L  +  S  E  +D    +KRK
Sbjct: 1   MEKASSFLFSGIRFDRKKFASDIARFKEKKENANSPEKLRLVETSQTEPADDMVSGKKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKGFHRKLERDALFRKKY 120
           R+ K   TE+V+GFSVFK S+ + A + NE+   SEN+ S E+K  +R++ERD++ RKK+
Sbjct: 61  RRGK--VTETVKGFSVFKSSESSTATAQNEK---SENELSREKKELNRQIERDSILRKKH 120

Query: 121 NIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
            IH+SG+NVPSPLQNFAEL +R+ C  YLL NL ELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 GIHISGHNVPSPLQNFAELSSRFGCKAYLLRNLAELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGS-----------------IEEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240
           CAPTGS                  ++GIRAVILCPTRELA+QTTRECKKLAKGKKF+IKL
Sbjct: 181 CAPTGSGKTLAFMCPILVKLKHGSKDGIRAVILCPTRELAAQTTRECKKLAKGKKFNIKL 240

Query: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI 300
           +TKE+ R  +F K SCD+L+STPLR+R A+ K+K+DLSRVE+LVLDESDKLFELG +KQI
Sbjct: 241 MTKELARSGNFEKMSCDILVSTPLRIRFAMXKRKLDLSRVEYLVLDESDKLFELGFVKQI 300

Query: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASATVKQKLVFAGS 360
           D++VKACSN SIVRSLFSATLPD VE+LAR++MHDAVRVIVGRKNTAS  +KQKLVFAGS
Sbjct: 301 DSVVKACSNSSIVRSLFSATLPDSVEELARTIMHDAVRVIVGRKNTASELIKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420
           EEGKLLALRQSF ESLNPP+L+FVQSKERAK+LY ELAF+NI+V+VIH+DLS+ +R+N V
Sbjct: 361 EEGKLLALRQSFKESLNPPVLLFVQSKERAKELYRELAFDNIRVDVIHADLSQTQRDNAV 420

Query: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXXXXXXAITF 480
            DFRAGKTWVLIATDVIARGMDFKG+NCVINYDFP+SA+AYIHRIXXXXXXXXXXXAIT+
Sbjct: 421 DDFRAGKTWVLIATDVIARGMDFKGINCVINYDFPESAAAYIHRIXXXXXXXXXXXAITY 480

Query: 481 Y---------NIGRKEIQSQTN-----QRMMKKKSKKHRLEGDSIQNKPKDE 502
           Y         NI      S          + K K KKHR + DSI  KPKDE
Sbjct: 481 YTEDDVPFLRNIANVMKSSGCEVPSWIMALPKLKRKKHRPQRDSISTKPKDE 527

[Close]

BLAST of Carg00996 vs. TrEMBL
Match: tr|A0A2N9FC75|A0A2N9FC75_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12675 PE=4 SV=1)

HSP 1 Score: 636.0 bits (1639), Expect = 8.0e-179
Identity = 361/539 (66.98%), Postives = 412/539 (76.44%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEK-- 60
           MEKG S LF+GIHFD+K+FA DF++F+ KK SD      S+    D   IE     EK  
Sbjct: 1   MEKGPSCLFSGIHFDRKKFANDFAKFQEKKGSD---RNESDELRKDSSFIETKKPEEKEG 60

Query: 61  ----RKRKRKSAAT-ESVEGFSVFKDSKLTVA-ASVNEENHPSENDPSEERKGFHRKLER 120
               +KRKRKS  + E+VEGF+VFK SK   A   VNE N  +EN+P+++ K  +RKLER
Sbjct: 61  KLSVKKRKRKSVVSEETVEGFNVFKSSKKAEAPLVVNEGNDEAENEPAKQNKELNRKLER 120

Query: 121 DALFRKKYNIHVSGNNVPSPLQNFAELKTRYECDPYLLHNLVELGFKEPTPIQRQAIPVL 180
           D+L RK YNIHVSGNNVP+PLQ+F EL TRY C+PYLLHNL ELGFKEPTPIQRQAIP+L
Sbjct: 121 DSLSRKNYNIHVSGNNVPTPLQDFDELSTRYGCEPYLLHNLKELGFKEPTPIQRQAIPIL 180

Query: 181 LSGRECFACAPTGS-----------------IEEGIRAVILCPTRELASQTTRECKKLAK 240
           LSGRECFACAPTGS                   EGIRAVILCPTRELA+QTTRECKKLAK
Sbjct: 181 LSGRECFACAPTGSGKTLAFACPMLMKLKDGSHEGIRAVILCPTRELAAQTTRECKKLAK 240

Query: 241 GKKFSIKLVTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLF 300
           GKKF IKL+T ++IR ADFSK  CD+LISTPLRLRLAIRKKKI+L RVE+LVLDESDKLF
Sbjct: 241 GKKFHIKLMTTQLIRSADFSKLPCDILISTPLRLRLAIRKKKINLRRVEYLVLDESDKLF 300

Query: 301 ELGLLKQIDTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASATVK 360
           +LGLLKQID++VKACSNPSI+RSLFSATLPD VE+LAR++MHDAVRVI+GRKNTAS  +K
Sbjct: 301 DLGLLKQIDSVVKACSNPSIIRSLFSATLPDSVEELARTIMHDAVRVIIGRKNTASELIK 360

Query: 361 QKLVFAGSEEGKLLALRQSFSESLNPPILIFVQSKERAKDLYGELAFENIKVNVIHSDLS 420
           Q+L FAGSEEGKL  LR  F ES NPPILIFVQSKERAK+LYGELA+E I+V+VIHSDLS
Sbjct: 361 QELKFAGSEEGKLHFLRTHFEESWNPPILIFVQSKERAKELYGELAYEKIRVDVIHSDLS 420

Query: 421 EIERENVVYDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIXXXXXXX 480
           E++REN + +FRAGKTWVLIATDVIARG+DFKGVNCVINYDFPDSA  YIHRIXXXXXXX
Sbjct: 421 ELQRENAINNFRAGKTWVLIATDVIARGVDFKGVNCVINYDFPDSALVYIHRIXXXXXXX 480

Query: 481 XXXXAITFYNIGRKEIQSQTNQRMM--------------KKKSKKHRLEGDSIQNKPKD 501
           XXXXAIT +    + +       M               K K KKHR   DSI   PKD
Sbjct: 481 XXXXAITLFTKADEHLLRNVANIMQSSGCEVPSWMLELRKLKWKKHRPRRDSISTNPKD 536

The following BLAST results are available for this feature:

BLAST of Carg00996 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946645.1	1.1e-248	89.14	DEAD-box ATP-dependent RNA helicase 57 [Cucurbita moschata]	[more]
XP_023540379.1	3.9e-246	88.58	DEAD-box ATP-dependent RNA helicase 57 [Cucurbita pepo subsp. pepo]	[more]
XP_023005802.1	2.0e-245	88.20	DEAD-box ATP-dependent RNA helicase 57 [Cucurbita maxima]	[more]
XP_022145743.1	3.2e-224	81.20	DEAD-box ATP-dependent RNA helicase 57 [Momordica charantia]	[more]
XP_004137811.1	1.6e-223	80.71	PREDICTED: DEAD-box ATP-dependent RNA helicase 57 [Cucumis sativus] >XP_01165194...	[more]

BLAST of Carg00996 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09720.1	7.6e-159	61.16	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G47330.1	4.3e-45	31.32	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G42520.1	3.6e-44	33.18	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G58570.1	3.6e-44	32.55	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT5G51280.1	3.6e-44	30.87	DEAD-box protein abstrakt, putative	[more]

BLAST of Carg00996 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84TG1\|RH57_ARATH	1.4e-157	61.16	DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana OX=3702 GN=RH57 P...	[more]
sp\|Q5K5B6\|RH57_ORYSJ	3.2e-154	58.12	DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|Q86IZ9\|DDX52_DICDI	4.2e-90	47.59	Probable ATP-dependent RNA helicase ddx52 OS=Dictyostelium discoideum OX=44689 G...	[more]
sp\|Q6BP45\|ROK1_DEBHA	2.8e-86	47.19	ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii (strain ATCC 36239 / CB...	[more]
sp\|Q6FN65\|ROK1_CANGA	3.7e-86	44.09	ATP-dependent RNA helicase ROK1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 ...	[more]

BLAST of Carg00996 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAD5\|A0A0A0LAD5_CUCSA	1.1e-223	80.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736920 PE=4 SV=1	[more]
tr\|A0A1S3B6W1\|A0A1S3B6W1_CUCME	7.6e-222	80.15	DEAD-box ATP-dependent RNA helicase 57 OS=Cucumis melo OX=3656 GN=LOC103486464 P...	[more]
tr\|F6HR01\|F6HR01_VITVI	6.5e-181	67.11	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g02300 PE=4 SV=...	[more]
tr\|A0A1U8A2F8\|A0A1U8A2F8_NELNU	9.4e-180	66.35	DEAD-box ATP-dependent RNA helicase 57 OS=Nelumbo nucifera OX=4432 GN=LOC1045964...	[more]
tr\|A0A2N9FC75\|A0A2N9FC75_FAGSY	8.0e-179	66.98	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12675 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0005524	ATP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR014014	RNA_helicase_DEAD_Q_motif
IPR011545	DEAD/DEAH_box_helicase_dom
IPR014001	Helicase_ATP-bd
IPR001650	Helicase_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00996-RA	Carg00996-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 374..455 e-value: 3.3E-30 score: 116.3
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 349..455 e-value: 3.8E-28 score: 98.0
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 333..502 score: 21.508
IPR001650	Helicase, C-terminal	CDD	cd00079	HELICc	coord: 334..463 e-value: 2.45363E-38 score: 136.214
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 157..337 e-value: 1.5E-31 score: 120.8
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 169..322 score: 19.186
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 100..185 e-value: 6.7E-17 score: 63.3
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 186..331 e-value: 1.6E-35 score: 124.0
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 332..543 e-value: 8.8E-48 score: 165.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 520..544
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 474..544
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 486..509
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 56..520
None	No IPR available	PANTHER	PTHR24031:SF336	ATP-DEPENDENT RNA HELICASE DDX52-RELATED	coord: 56..520
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 189..310 e-value: 2.9E-20 score: 72.7
IPR014014	RNA helicase, DEAD-box type, Q motif	PROSITE	PS51195	Q_MOTIF	coord: 138..166 score: 8.698
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 190..471

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00996	Cla017834	Watermelon (97103) v1	carwmB0146
Carg00996	Csa3G736920	Cucumber (Chinese Long) v2	carcuB0175
Carg00996	MELO3C009324	Melon (DHL92) v3.5.1	carmeB0161
Carg00996	ClCG10G020470	Watermelon (Charleston Gray)	carwcgB0147
Carg00996	CSPI03G33040	Wild cucumber (PI 183967)	carcpiB0181
Carg00996	Cucsa.307070	Cucumber (Gy14) v1	carcgyB0196
Carg00996	CmoCh06G003560	Cucurbita moschata (Rifu)	carcmoB0227
Carg00996	Lsi03G020430	Bottle gourd (USVL1VR-Ls)	carlsiB141
Carg00996	CsGy3G030770	Cucumber (Gy14) v2	carcgybB0170
Carg00996	MELO3C009324.2	Melon (DHL92) v3.6.1	carmedB0162
Carg00996	CsaV3_3G035650	Cucumber (Chinese Long) v3	carcucB0181
Carg00996	Cla97C10G203650	Watermelon (97103) v2	carwmbB0159
Carg00996	Bhi11G001798	Wax gourd	carwgoB0196

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00996	Wax gourd	carwgoB0206
Carg00996	Wax gourd	carwgoB0210
Carg00996	Silver-seed gourd	carcarB180
Carg00996	Silver-seed gourd	carcarB184
Carg00996	Silver-seed gourd	carcarB187
Carg00996	Silver-seed gourd	carcarB190
Carg00996	Silver-seed gourd	carcarB194
Carg00996	Cucurbita maxima (Rimu)	carcmaB0203
Carg00996	Cucurbita maxima (Rimu)	carcmaB0209
Carg00996	Cucurbita maxima (Rimu)	carcmaB0216
Carg00996	Cucurbita maxima (Rimu)	carcmaB0217
Carg00996	Cucurbita moschata (Rifu)	carcmoB0214
Carg00996	Cucurbita moschata (Rifu)	carcmoB0220
Carg00996	Cucurbita moschata (Rifu)	carcmoB0228
Carg00996	Cucurbita pepo (Zucchini)	carcpeB0221
Carg00996	Cucurbita pepo (Zucchini)	carcpeB0224
Carg00996	Cucurbita pepo (Zucchini)	carcpeB0227
Carg00996	Cucurbita pepo (Zucchini)	carcpeB0230
Carg00996	Cucurbita pepo (Zucchini)	carcpeB0233
Carg00996	Bottle gourd (USVL1VR-Ls)	carlsiB138
Carg00996	Melon (DHL92) v3.5.1	carmeB0164
Carg00996	Melon (DHL92) v3.5.1	carmeB0158
Carg00996	Melon (DHL92) v3.6.1	carmedB0165
Carg00996	Watermelon (Charleston Gray)	carwcgB0152
Carg00996	Watermelon (Charleston Gray)	carwcgB0155
Carg00996	Watermelon (97103) v1	carwmB0151
Carg00996	Watermelon (97103) v1	carwmB0152
Carg00996	Watermelon (97103) v2	carwmbB0164
Carg00996	Watermelon (97103) v2	carwmbB0167