Carg00969 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00969
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	transcription initiation factor TFIID subunit 8-like
Location	Cucurbita_argyrosperma_scaffold_002 : 316213 .. 317280 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGATGGGGCTAGGAATAACATGAAGTCGAAAGAACAACAAAGCTCTGATTCGAGAAAATGCAGAGGCAATGAGTTTGGACGAGAGGTGTCGAGAATTGCTGTGGCTCAGATATGTAATAGTGCAGGGTTTCAGAGATTCAAGGAGTCAGCTCTAGACGCATTGGTCGACATCGCTATCAAGTACCTTCGCCATTTGGGTAAGATAGCAGCATTCTATGCTAATTTGGCTGGTAGAATTGAGTGCAATGTTTTTGATATAATTAGAGGGCTTGAAGAGTTGGAATCATCACAGGGGTTTCAGGAGGCTTGGGAACCAATTCAATGTCTTGCTAATTCAGGGTCAGTGAAGAACATTGTTCGGTACGTGAATTCAGTTGAAGAGATCCCTTTTGCTCACCCATTACCATGTTTCCCTGTGATCAGAAACAGGAGGGCAATTCCAAGTTTCCTTCAGATTGGTGAAACCCCACCTGGCAAACACATTGCCGATTGGTTACCAGCTTTCCCTGATGCTCATACTTACGACCCTTCAACTTTGTGGAGGAGGAGCCCGGGTGAGCCGTGTGCCGAGAAGATGGAGATGTCGAGGCAGCGAAGGAAGGCAGAGAAATCCATGTCGGGTTTGCAGAAGAGATTGTTATCCTGTGGTTCAGCAAGAAATGGCAATGGGGAGATTGAGTTAACAGGAGGTGAGAGTAATCCATTCCTTGGGACATGTTTGCAAGAGATGGAAGATGGGAGTGCCATGGATGGGATAAGCCATTTGTCTGTGCCAGAGGTGGTTGCTCCTGCCATTGAAGCGATTAATGGCTGTGGATTAGCTAAGAATGAGGACGACAAGGCAAGGATTCTTCCTATTGAGAGGCCTCCTGTTCGTTTCAAGTTAGAAACTACCAAAACCTTTCTTAGAGGATCTAGGAATTTGAATGCTAAAATGGCAGGAAACAGGGAATCAGTGTTCTGGGTTAGACGAGATGATGAAAGAGATGAAAAGAAGAGGAGAGTTGAATACATTCCCAGACATTCTGAAGAAAACTCTCATGAGGAGCTCAACCTGTCCTGA

mRNA sequence

ATGAGCGATGGGGCTAGGAATAACATGAAGTCGAAAGAACAACAAAGCTCTGATTCGAGAAAATGCAGAGGCAATGAGTTTGGACGAGAGGTGTCGAGAATTGCTGTGGCTCAGATATGTAATAGTGCAGGGTTTCAGAGATTCAAGGAGTCAGCTCTAGACGCATTGGTCGACATCGCTATCAAGTACCTTCGCCATTTGGGTAAGATAGCAGCATTCTATGCTAATTTGGCTGGTAGAATTGAGTGCAATGTTTTTGATATAATTAGAGGGCTTGAAGAGTTGGAATCATCACAGGGGTTTCAGGAGGCTTGGGAACCAATTCAATGTCTTGCTAATTCAGGGTCAGTGAAGAACATTGTTCGGTACGTGAATTCAGTTGAAGAGATCCCTTTTGCTCACCCATTACCATGTTTCCCTGTGATCAGAAACAGGAGGGCAATTCCAAGTTTCCTTCAGATTGGTGAAACCCCACCTGGCAAACACATTGCCGATTGGTTACCAGCTTTCCCTGATGCTCATACTTACGACCCTTCAACTTTGTGGAGGAGGAGCCCGGGTGAGCCGTGTGCCGAGAAGATGGAGATGTCGAGGCAGCGAAGGAAGGCAGAGAAATCCATGTCGGGTTTGCAGAAGAGATTGTTATCCTGTGGTTCAGCAAGAAATGGCAATGGGGAGATTGAGTTAACAGGAGGTGAGAGTAATCCATTCCTTGGGACATGTTTGCAAGAGATGGAAGATGGGAGTGCCATGGATGGGATAAGCCATTTGTCTGTGCCAGAGGTGGTTGCTCCTGCCATTGAAGCGATTAATGGCTGTGGATTAGCTAAGAATGAGGACGACAAGGCAAGGATTCTTCCTATTGAGAGGCCTCCTGTTCGTTTCAAGTTAGAAACTACCAAAACCTTTCTTAGAGGATCTAGGAATTTGAATGCTAAAATGGCAGGAAACAGGGAATCAGTGTTCTGGGTTAGACGAGATGATGAAAGAGATGAAAAGAAGAGGAGAGTTGAATACATTCCCAGACATTCTGAAGAAAACTCTCATGAGGAGCTCAACCTGTCCTGA

Coding sequence (CDS)

ATGAGCGATGGGGCTAGGAATAACATGAAGTCGAAAGAACAACAAAGCTCTGATTCGAGAAAATGCAGAGGCAATGAGTTTGGACGAGAGGTGTCGAGAATTGCTGTGGCTCAGATATGTAATAGTGCAGGGTTTCAGAGATTCAAGGAGTCAGCTCTAGACGCATTGGTCGACATCGCTATCAAGTACCTTCGCCATTTGGGTAAGATAGCAGCATTCTATGCTAATTTGGCTGGTAGAATTGAGTGCAATGTTTTTGATATAATTAGAGGGCTTGAAGAGTTGGAATCATCACAGGGGTTTCAGGAGGCTTGGGAACCAATTCAATGTCTTGCTAATTCAGGGTCAGTGAAGAACATTGTTCGGTACGTGAATTCAGTTGAAGAGATCCCTTTTGCTCACCCATTACCATGTTTCCCTGTGATCAGAAACAGGAGGGCAATTCCAAGTTTCCTTCAGATTGGTGAAACCCCACCTGGCAAACACATTGCCGATTGGTTACCAGCTTTCCCTGATGCTCATACTTACGACCCTTCAACTTTGTGGAGGAGGAGCCCGGGTGAGCCGTGTGCCGAGAAGATGGAGATGTCGAGGCAGCGAAGGAAGGCAGAGAAATCCATGTCGGGTTTGCAGAAGAGATTGTTATCCTGTGGTTCAGCAAGAAATGGCAATGGGGAGATTGAGTTAACAGGAGGTGAGAGTAATCCATTCCTTGGGACATGTTTGCAAGAGATGGAAGATGGGAGTGCCATGGATGGGATAAGCCATTTGTCTGTGCCAGAGGTGGTTGCTCCTGCCATTGAAGCGATTAATGGCTGTGGATTAGCTAAGAATGAGGACGACAAGGCAAGGATTCTTCCTATTGAGAGGCCTCCTGTTCGTTTCAAGTTAGAAACTACCAAAACCTTTCTTAGAGGATCTAGGAATTTGAATGCTAAAATGGCAGGAAACAGGGAATCAGTGTTCTGGGTTAGACGAGATGATGAAAGAGATGAAAAGAAGAGGAGAGTTGAATACATTCCCAGACATTCTGAAGAAAACTCTCATGAGGAGCTCAACCTGTCCTGA

Protein sequence

MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIAIKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNIVRYVNSVEEIPFAHPLPCFPVIRNRRAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPSTLWRRSPGEPCAEKMEMSRQRRKAEKSMSGLQKRLLSCGSARNGNGEIELTGGESNPFLGTCLQEMEDGSAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETTKTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS

Homology

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BLAST of Carg00969 vs. NCBI nr
Match: XP_022953103.1 (transcription initiation factor TFIID subunit 8-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 693.3 bits (1788), Expect = 4.2e-196
Identity = 346/355 (97.46%), Postives = 351/355 (98.87%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60
           MSDGARN MKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA
Sbjct: 1   MSDGARNIMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLA SGSVKNI
Sbjct: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLAKSGSVKNI 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRRAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPST 180
           VRYVNSVEEIPFAHPLPCFPVIRNR+AIPSFLQIGETPPG HIADWLPAFPDAHTYDPST
Sbjct: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGETPPGTHIADWLPAFPDAHTYDPST 180

Query: 181 LWRRSPGEPCAEKMEMSRQRRKAEKSMSGLQKRLLSCGSARNGNGEIELTGGESNPFLGT 240
           LWRRSP EPCAEKMEM+RQRRKAEKSMSGLQKRL+SCGSARNGNGEIEL+GGESNPFLGT
Sbjct: 181 LWRRSPSEPCAEKMEMARQRRKAEKSMSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240

Query: 241 CLQEMEDGSAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETT 300
           CLQEMEDGSAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLET+
Sbjct: 241 CLQEMEDGSAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETS 300

Query: 301 KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS 356
           KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS
Sbjct: 301 KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS 355

[Close]

BLAST of Carg00969 vs. NCBI nr
Match: XP_023540161.1 (transcription initiation factor TFIID subunit 8-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 691.0 bits (1782), Expect = 2.1e-195
Identity = 343/355 (96.62%), Postives = 351/355 (98.87%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60
           MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGF RFKESALDALVDIA
Sbjct: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFHRFKESALDALVDIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYLRHLGKIAA YANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNI
Sbjct: 61  IKYLRHLGKIAALYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNI 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRRAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPST 180
           VRYVNSVEEIPFAHPLPCFPVIRNR+AIPSFLQIGETPPGKHIADWLPAFPDAHTYDPST
Sbjct: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPST 180

Query: 181 LWRRSPGEPCAEKMEMSRQRRKAEKSMSGLQKRLLSCGSARNGNGEIELTGGESNPFLGT 240
           LWRRSP EPCAEKMEM+RQRRKAEKS+SGLQKRL+SCGSARNGNGEIEL+GGESNPFLGT
Sbjct: 181 LWRRSPSEPCAEKMEMARQRRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240

Query: 241 CLQEMEDGSAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETT 300
           CLQEMEDG+AMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLET+
Sbjct: 241 CLQEMEDGTAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETS 300

Query: 301 KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS 356
           KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHS+ENSHEELN S
Sbjct: 301 KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSQENSHEELNQS 355

[Close]

BLAST of Carg00969 vs. NCBI nr
Match: XP_022953779.1 (transcription initiation factor TFIID subunit 8-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 647.5 bits (1669), Expect = 2.6e-182
Identity = 329/355 (92.68%), Postives = 334/355 (94.08%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60
           MSDGARN MKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA
Sbjct: 1   MSDGARNIMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLA SGSVKNI
Sbjct: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLAKSGSVKNI 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRRAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPST 180
           VRYVNSVEEIPFAHPLPCFPVIRNR+AIPSFLQIGETPPG HIADWLPAFPDAHTYDPST
Sbjct: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGETPPGTHIADWLPAFPDAHTYDPST 180

Query: 181 LWRRSPGEPCAEKMEMSRQRRKAEKSMSGLQKRLLSCGSARNGNGEIELTGGESNPFLGT 240
           LWRRSP EPCAEKMEM+RQRRKAEKSMSGLQKRL+SCGSARNGNGEIEL+GGESNPFLGT
Sbjct: 181 LWRRSPSEPCAEKMEMARQRRKAEKSMSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240

Query: 241 CLQEMEDGSAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETT 300
           CLQEMEDGSAMDGISHLSVPEVVAPAIEAING                 RPPVRFKLET+
Sbjct: 241 CLQEMEDGSAMDGISHLSVPEVVAPAIEAING-----------------RPPVRFKLETS 300

Query: 301 KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS 356
           KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS
Sbjct: 301 KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS 338

[Close]

BLAST of Carg00969 vs. NCBI nr
Match: XP_022954508.1 (transcription initiation factor TFIID subunit 8-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 619.8 bits (1597), Expect = 5.9e-174
Identity = 318/355 (89.58%), Postives = 323/355 (90.99%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60
           MSDGARN MKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA
Sbjct: 1   MSDGARNIMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLA SG     
Sbjct: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLAKSG----- 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRRAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPST 180
                                  NR+AIPSFLQIGETPPG HIADWLPAFPDAHTYDPST
Sbjct: 121 -----------------------NRKAIPSFLQIGETPPGTHIADWLPAFPDAHTYDPST 180

Query: 181 LWRRSPGEPCAEKMEMSRQRRKAEKSMSGLQKRLLSCGSARNGNGEIELTGGESNPFLGT 240
           LWRRSP EPCAEKMEM+RQRRKAEKSMSGLQKRL+SCGSARNGNGEIEL+GGESNPFLGT
Sbjct: 181 LWRRSPSEPCAEKMEMARQRRKAEKSMSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240

Query: 241 CLQEMEDGSAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETT 300
           CLQEMEDGSAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLET+
Sbjct: 241 CLQEMEDGSAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETS 300

Query: 301 KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS 356
           KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS
Sbjct: 301 KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS 327

[Close]

BLAST of Carg00969 vs. NCBI nr
Match: XP_023540162.1 (transcription initiation factor TFIID subunit 8-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 617.5 bits (1591), Expect = 2.9e-173
Identity = 315/355 (88.73%), Postives = 323/355 (90.99%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60
           MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGF RFKESALDALVDIA
Sbjct: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFHRFKESALDALVDIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYLRHLGKIAA YANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSG     
Sbjct: 61  IKYLRHLGKIAALYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSG----- 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRRAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPST 180
                                  NR+AIPSFLQIGETPPGKHIADWLPAFPDAHTYDPST
Sbjct: 121 -----------------------NRKAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPST 180

Query: 181 LWRRSPGEPCAEKMEMSRQRRKAEKSMSGLQKRLLSCGSARNGNGEIELTGGESNPFLGT 240
           LWRRSP EPCAEKMEM+RQRRKAEKS+SGLQKRL+SCGSARNGNGEIEL+GGESNPFLGT
Sbjct: 181 LWRRSPSEPCAEKMEMARQRRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240

Query: 241 CLQEMEDGSAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETT 300
           CLQEMEDG+AMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLET+
Sbjct: 241 CLQEMEDGTAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETS 300

Query: 301 KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS 356
           KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHS+ENSHEELN S
Sbjct: 301 KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSQENSHEELNQS 327

[Close]

BLAST of Carg00969 vs. TAIR10
Match: AT4G34340.1 (TBP-associated factor 8)

HSP 1 Score: 220.7 bits (561), Expect = 1.4e-57
Identity = 136/356 (38.20%), Postives = 203/356 (57.02%), Query Frame = 0


Query: 7   NNMKSKEQQSSDSRKCRG----NEFGREVSRIAVAQICNSAGFQRFKESALDALVDIAIK 66
           N  +++E   +D+    G     EF    ++ AVAQ+C S G++ FK+ AL++L   A++
Sbjct: 2   NTERAQEGDRNDAASSSGCSESYEFSHAAAKAAVAQVCESVGYENFKDPALESLSGFALQ 61

Query: 67  YLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNIVR 126
           Y+  LGK A  +ANL GR +CNVFDII  L++L  + G Q        L  S  ++ I+ 
Sbjct: 62  YILQLGKTATSFANLTGRSQCNVFDIILALDDLTDNNGEQGISSESCSLGRSIKLREIID 121

Query: 127 YVNSVEEIPFAHPLPCFPVI---RNRRAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPS 186
           +VNS EE+PF+ PLP FPV    R+R+ IPSF++IGETPPGKHI  WLPAFPD HTY  +
Sbjct: 122 FVNSSEEVPFSQPLPSFPVAISDRSRKMIPSFVEIGETPPGKHIPLWLPAFPDPHTYKET 181

Query: 187 TLWRRSPGEPCAEKMEMSRQRRKAEKSMSGLQKRLLSCGSARN------GNGEIELTGGE 246
            +W     +P  +K+E +RQRRKAE+++  LQ++L+   S+RN         + E+   E
Sbjct: 182 PMWIERVSDPRGDKIEQARQRRKAERALLSLQRKLVCKISSRNPVWGDMDGVKEEMRDDE 241

Query: 247 SNPFLGTCLQEMEDGSAMDGISH--LSVPEVVAPAIEAINGCGLAKNEDDKARILPIERP 306
           S       L+ +  G  ++ ++   LSV E  APA+EA      ++   +  +     +P
Sbjct: 242 SE------LRSVSSGEKVESLNRDGLSVIEAFAPAMEAARDGFSSEAHTEWKK----NKP 301

Query: 307 PVRFKLETTKTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEEN 348
               KL T K FL    +L+ +M G    + +VR +D RD+K+RR E+I R   EN
Sbjct: 302 VALSKLRTEKKFLGQPLDLSLQMKGEDRPISFVREED-RDDKRRRAEFILRQCMEN 346

[Close]

BLAST of Carg00969 vs. TAIR10
Match: AT5G15570.1 (Bromodomain transcription factor)

HSP 1 Score: 158.7 bits (400), Expect = 6.7e-39
Identity = 121/373 (32.44%), Postives = 176/373 (47.18%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSA---------------GF 60
           ++ G     + +E Q   S   RGN+F   ++R+A AQIC S                 F
Sbjct: 2   INGGGEGGSQRRELQGKRSMS-RGNDFAYALARMATAQICESVEINSYQESSQSREGLRF 61

Query: 61  QRFKESALDALVDIAIKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAW 120
             F+E+AL+ L D+ I+Y++++GK A FY N+AGR+E N  DI++ LE+L S  GF  A 
Sbjct: 62  SSFQETALETLTDVVIQYIQNIGKTAQFYVNMAGRVESNALDIVQALEDLGSGLGFDGAH 121

Query: 121 EPIQCLANSGSVKNIVRYVNSVEEIPFAHPLPCFPVIRNRRAIPSFLQIGETPPGKHIAD 180
           +   CLA+SG VK+I+RY    EEIPF + LP FP  R +R  PSF  IG  PP +HI  
Sbjct: 122 DVEHCLADSGVVKDIIRYTGEAEEIPFVYSLPRFPFNRGKRPAPSFSDIGVEPPDEHIPV 181

Query: 181 WLPAFPDAHTYDPSTLWRRSPGEPCAEKMEMSRQRRKAEKSMSGLQK-----RLLSCGSA 240
           WLPAFP+       T       E   +K+E   Q R    S+  +Q+     RL    S 
Sbjct: 182 WLPAFPE-------TKMSNGSEEINVDKIERDVQSRDNGSSLMSVQQSVDVDRLKVQKSM 241

Query: 241 RNGNGEIELTGGESNPFLGTCLQEMEDGSAM-----------DGISHLSVPE---VVAPA 300
              + +  +   E NPFL   +   E   ++           + IS   +PE    ++  
Sbjct: 242 DQKDVQKPIEEPEGNPFLAAPIWVGEKNVSLSRVVCPSELRKEEISTNHLPEKHMSMSHH 301

Query: 301 IEAINGCGLAKNEDDKARILPIERPPVRFKLETTKTFLR---GSRNLNAKMAGNR--ESV 335
           I A+    L+   +DK R+  +E    R    T    LR   G+R  +     N+  E  
Sbjct: 302 IPALEAYALSDKINDKNRLAGMEDEQKRDGARTQGALLRFKIGTRKASECWKINQCLEEK 361

[Close]

BLAST of Carg00969 vs. TAIR10
Match: AT3G02160.1 (Bromodomain transcription factor)

HSP 1 Score: 155.6 bits (392), Expect = 5.7e-38
Identity = 114/375 (30.40%), Postives = 175/375 (46.67%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNS--------------AGFQ 60
           M++G       + +     +  RGN+F   ++R+AVAQIC S                F 
Sbjct: 17  MNNGVGEGGSQQRELHGKRKLFRGNDFAFSIARMAVAQICESVEVNPYQESQTREGVRFS 76

Query: 61  RFKESALDALVDIAIKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWE 120
            F+ESALD L D+A++Y++ +GK A  YANLAGR++ N  DI++ LE+L S  GF    +
Sbjct: 77  SFQESALDTLTDVAVQYIQSIGKTAHLYANLAGRVDGNSLDILQALEDLGSGLGFAGVSD 136

Query: 121 PIQCLANSGSVKNIVRYVNSVEEIPFAHPLPCFPVIRNRRAIPSFLQIGETPPGKHIADW 180
              CLA+SG VK+I+RY    EEIPF + LP FP  + ++  PSF ++G  PP +HI  W
Sbjct: 137 TDHCLADSGVVKDIIRYTGEAEEIPFVYSLPRFPFSKEKKPAPSFSEVGAEPPDEHIPVW 196

Query: 181 LPAFPDAHTYDPSTLWRRSPGEPCAEKMEMSRQRRKAEKSMSGLQKRLLSCGSARNGNGE 240
           LPAFP+    D S     +  E      E        + S  G  +  L    +    GE
Sbjct: 197 LPAFPETELCDRSEETNAATIEGEIPSKENGSSLPSMQLSFDGGGR--LEIHKSSKDVGE 256

Query: 241 IELTGGESNPFLGTCLQEMEDGSA----------------------MDGISHLSVPEVVA 300
                 E N FL   L+ +E   +                      +    H+ + E  A
Sbjct: 257 STEAVVEGNLFLTAPLRFVEKNVSPVVRPLELSNEVVRTNHVPDKHVRNNHHIPILEASA 316

Query: 301 PAIEAINGCGLAKNED-DKARILPIERPPVRFKLETTKTFLRGSRNLNAKMAGNRESVFW 339
           P+ +  N   LA ++D +K  +   E   VRFK+ TTK  +  ++N + +  G      W
Sbjct: 317 PSDKINNKNWLAISKDVEKVDVARKELTLVRFKIGTTKRSMCLAKNRSFQEEG------W 376

[Close]

BLAST of Carg00969 vs. TAIR10
Match: AT1G31240.1 (Bromodomain transcription factor)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-18
Identity = 59/180 (32.78%), Postives = 90/180 (50.00%), Query Frame = 0


Query: 6   RNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIAIKYLR 65
           R N K K +++SD       EF   +++IAV+QIC S G++    SAL+ L     K+L+
Sbjct: 5   RRNSKLKFEETSDQSPTSTAEFSFSLTKIAVSQICQSIGYKATDASALNTLTLTTTKFLQ 64

Query: 66  HLGKIAAFYANLAGRIECNVFDIIRGLEELESSQ------GFQEAWEPIQCLANSGSVKN 125
            L ++A+ ++N A R E N+FDI+ GL+++  S       G        QCL  S  ++N
Sbjct: 65  SLAELASSFSNTANRTEVNLFDIVNGLQDIALSTSDCFPGGSTVHDIESQCLIKSAVLRN 124

Query: 126 IVRYVNSVEEIPFAHPLP------CFPVIRNRRAIPSFLQIGETPPGKHIADWLPAFPDA 174
           +  +V    EIPFA PLP       F    +  A+   + +   P       WLP FPD+
Sbjct: 125 LSDFVTYAPEIPFAKPLPRRERDGSFGGDLDHVAVTRSVDVTSVPA------WLPPFPDS 178

[Close]

BLAST of Carg00969 vs. Swiss-Prot
Match: sp|Q9SYZ9|TAF8_ARATH (Transcription initiation factor TFIID subunit 8 OS=Arabidopsis thaliana OX=3702 GN=TAF8 PE=1 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.6e-56
Identity = 136/356 (38.20%), Postives = 203/356 (57.02%), Query Frame = 0


Query: 7   NNMKSKEQQSSDSRKCRG----NEFGREVSRIAVAQICNSAGFQRFKESALDALVDIAIK 66
           N  +++E   +D+    G     EF    ++ AVAQ+C S G++ FK+ AL++L   A++
Sbjct: 2   NTERAQEGDRNDAASSSGCSESYEFSHAAAKAAVAQVCESVGYENFKDPALESLSGFALQ 61

Query: 67  YLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNIVR 126
           Y+  LGK A  +ANL GR +CNVFDII  L++L  + G Q        L  S  ++ I+ 
Sbjct: 62  YILQLGKTATSFANLTGRSQCNVFDIILALDDLTDNNGEQGISSESCSLGRSIKLREIID 121

Query: 127 YVNSVEEIPFAHPLPCFPVI---RNRRAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPS 186
           +VNS EE+PF+ PLP FPV    R+R+ IPSF++IGETPPGKHI  WLPAFPD HTY  +
Sbjct: 122 FVNSSEEVPFSQPLPSFPVAISDRSRKMIPSFVEIGETPPGKHIPLWLPAFPDPHTYKET 181

Query: 187 TLWRRSPGEPCAEKMEMSRQRRKAEKSMSGLQKRLLSCGSARN------GNGEIELTGGE 246
            +W     +P  +K+E +RQRRKAE+++  LQ++L+   S+RN         + E+   E
Sbjct: 182 PMWIERVSDPRGDKIEQARQRRKAERALLSLQRKLVCKISSRNPVWGDMDGVKEEMRDDE 241

Query: 247 SNPFLGTCLQEMEDGSAMDGISH--LSVPEVVAPAIEAINGCGLAKNEDDKARILPIERP 306
           S       L+ +  G  ++ ++   LSV E  APA+EA      ++   +  +     +P
Sbjct: 242 SE------LRSVSSGEKVESLNRDGLSVIEAFAPAMEAARDGFSSEAHTEWKK----NKP 301

Query: 307 PVRFKLETTKTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEEN 348
               KL T K FL    +L+ +M G    + +VR +D RD+K+RR E+I R   EN
Sbjct: 302 VALSKLRTEKKFLGQPLDLSLQMKGEDRPISFVREED-RDDKRRRAEFILRQCMEN 346

[Close]

BLAST of Carg00969 vs. Swiss-Prot
Match: sp|Q5VWG9|TAF3_HUMAN (Transcription initiation factor TFIID subunit 3 OS=Homo sapiens OX=9606 GN=TAF3 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.8e-08
Identity = 40/145 (27.59%), Postives = 69/145 (47.59%), Query Frame = 0


Query: 27  FGREVSRIAVAQICNSAGFQRFKESALDALVDIAIKYLRHLGKIAAFYANLAGRIECNVF 86
           + R + R++VAQIC + G+   + SA   L D+  +YL+ LG+    Y+ L GR +  + 
Sbjct: 5   YSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPILD 64

Query: 87  DIIRGLEELESSQGFQEAWEPIQCLANSGSVKNIVRYVNSVEEIPFAHPLPCFPVIRNRR 146
           D+          + FQ             S+  +  Y++++E + F H +P FPV +N  
Sbjct: 65  DV---------GEAFQ---------LMGVSLHELEDYIHNIEPVTFPHQIPSFPVSKNN- 124

Query: 147 AIPSFLQIGETPP---GKHIADWLP 169
            +  F Q G        ++I D+LP
Sbjct: 125 -VLQFPQPGSKDAEERKEYIPDYLP 129

[Close]

BLAST of Carg00969 vs. Swiss-Prot
Match: sp|Q5F489|TAF3_CHICK (Transcription initiation factor TFIID subunit 3 OS=Gallus gallus OX=9031 GN=TAF3 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-07
Identity = 38/145 (26.21%), Postives = 69/145 (47.59%), Query Frame = 0


Query: 27  FGREVSRIAVAQICNSAGFQRFKESALDALVDIAIKYLRHLGKIAAFYANLAGRIECNVF 86
           + R + R++VAQIC + G+   + SA D L D+  +YL+ LG+    Y  L GR +  + 
Sbjct: 5   YSRWLLRVSVAQICQALGWDSVQVSACDLLTDVLQRYLQGLGRGCHRYCELYGRTDPILD 64

Query: 87  DIIRGLEELESSQGFQEAWEPIQCLANSGSVKNIVRYVNSVEEIPFAHPLPCFPVIRNRR 146
           D+    + +                    ++  +  Y++++E + FAH +P FPV +N  
Sbjct: 65  DVGDAFKLM------------------GVNLHELEDYIHNIEPVTFAHQIPSFPVSKNN- 124

Query: 147 AIPSFLQIGETPP---GKHIADWLP 169
            +  F Q G        ++I D++P
Sbjct: 125 -VLQFPQPGSKDAEERKEYIPDYMP 129

[Close]

BLAST of Carg00969 vs. Swiss-Prot
Match: sp|Q5HZG4|TAF3_MOUSE (Transcription initiation factor TFIID subunit 3 OS=Mus musculus OX=10090 GN=Taf3 PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-07
Identity = 39/145 (26.90%), Postives = 69/145 (47.59%), Query Frame = 0


Query: 27  FGREVSRIAVAQICNSAGFQRFKESALDALVDIAIKYLRHLGKIAAFYANLAGRIECNVF 86
           + R + R++VAQIC + G+   + SA   L D+  +YL+ LG+    Y+ L GR +  + 
Sbjct: 5   YSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPILD 64

Query: 87  DIIRGLEELESSQGFQEAWEPIQCLANSGSVKNIVRYVNSVEEIPFAHPLPCFPVIRNRR 146
           D+          + FQ             ++  +  Y++++E + F H +P FPV +N  
Sbjct: 65  DV---------GEAFQ---------LMGVNLHELEDYIHNIEPVTFPHQIPSFPVSKNN- 124

Query: 147 AIPSFLQIGETPPGK---HIADWLP 169
            +  F Q G     +   +I D+LP
Sbjct: 125 -VLQFPQPGSKDAEERKDYIPDYLP 129

[Close]

BLAST of Carg00969 vs. Swiss-Prot
Match: sp|Q9P6P0|TAF3_SCHPO (Transcription initiation factor TFIID subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=taf3 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.3e-04
Identity = 37/135 (27.41%), Postives = 56/135 (41.48%), Query Frame = 0


Query: 33  RIAVAQICNSAGFQRFKESALDALVDIAIKYLRHLGKIAAFYANLAGRIECNVFDIIRGL 92
           RI  +Q   +AG  R K S L++  DI I+Y+R L + A   A +  R  C++ D+   +
Sbjct: 15  RIFCSQTLRAAGIDRTKVSLLNSFTDITIRYIRLLSETAMAKAEVGRRSCCDLGDLRLAM 74

Query: 93  EELESSQGFQEAWEPIQCLANSGSVKNIVRYVNSVEEIPFAHPLPCFPVIRNRRAIPSFL 152
           EE+    G +E             VK +V + N              P +   R +  F+
Sbjct: 75  EEIGLLNGSEE------------DVKTLVEWFNG-------------PQVAELRRVSGFV 122

Query: 153 QIGETPPGKHIADWL 168
           Q  ET       DWL
Sbjct: 135 QDSETQVKP--KDWL 122

[Close]

BLAST of Carg00969 vs. TrEMBL
Match: tr|A0A0A0LDI8|A0A0A0LDI8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740170 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 6.0e-143
Identity = 273/371 (73.58%), Postives = 296/371 (79.78%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60
           M DG  NNMKSKEQQSSDSRKCRGNEF +EVS+IAVAQ+CNS GFQ FKESALD L DIA
Sbjct: 1   MRDGVGNNMKSKEQQSSDSRKCRGNEFVQEVSKIAVAQMCNSVGFQSFKESALDTLADIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYL HLGKIA FYANLAGRIECNVFDIIRGLEELE SQGF  AW+   CLANSGSVKNI
Sbjct: 61  IKYLHHLGKIATFYANLAGRIECNVFDIIRGLEELEQSQGFLGAWQSDHCLANSGSVKNI 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRRAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPST 180
           V YVNSV+EIPFAHPLPCF VIR R +IP+F+QIGETPP KHI  WLPAFPDAHTY  S 
Sbjct: 121 VCYVNSVQEIPFAHPLPCFSVIRKRESIPTFVQIGETPPSKHIPSWLPAFPDAHTYSHSA 180

Query: 181 LWRRSPGEPCAEKMEMSRQRRKAEKSMSGLQKRLLSCGSARNGNGEIELTGGESNPFLGT 240
           LWRR P E  AEK+E+++QRRKAEKS+ GLQ+RL+SCGS R+GNGEIE +GGESN  LGT
Sbjct: 181 LWRRKPKELRAEKIELAKQRRKAEKSLLGLQQRLVSCGSERSGNGEIEFSGGESNSLLGT 240

Query: 241 CLQEMEDG--------SAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPP 300
           C QE+EDG        S  DGISHLSVPEV APAIEAI G G   ++D+KA+ILP  RP 
Sbjct: 241 CFQEIEDGIGLPYENTSGKDGISHLSVPEVFAPAIEAIKGGGCPNSQDEKAKILPRVRPL 300

Query: 301 VRFKLETTKTFLRGSRNLNAKMAGNRESVFWVRRDD--------ERDEKKRRVEYIPRHS 356
           V FKLET KTFL GS NL+AKM G RESVFWVRRDD        ERDEKKRRVEYI RHS
Sbjct: 301 VHFKLETCKTFLGGSMNLSAKMRGIRESVFWVRRDDERDRKHKNERDEKKRRVEYILRHS 360

[Close]

BLAST of Carg00969 vs. TrEMBL
Match: tr|A0A1S3B6Z5|A0A1S3B6Z5_CUCME (transcription initiation factor TFIID subunit 8-like OS=Cucumis melo OX=3656 GN=LOC103486494 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 1.9e-141
Identity = 269/371 (72.51%), Postives = 294/371 (79.25%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60
           M DG  NNMKSKEQQSSDSRKCRGNEFGREVS+IAVAQ+CNS GFQ FKESALD L DIA
Sbjct: 1   MRDGVGNNMKSKEQQSSDSRKCRGNEFGREVSKIAVAQMCNSVGFQSFKESALDTLADIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYL  LGKIA FYANLAGRIECNVFDIIRGLEELESSQGF  AW+   CLA SGSVKNI
Sbjct: 61  IKYLHQLGKIATFYANLAGRIECNVFDIIRGLEELESSQGFLGAWQSDHCLAKSGSVKNI 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRRAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPST 180
           V YVNSV+EIPFAHPLPCFPVIR R +IP+F+QIGETPP KHI  WLPAFPDAHTY  S 
Sbjct: 121 VCYVNSVQEIPFAHPLPCFPVIRKRESIPTFVQIGETPPSKHIPSWLPAFPDAHTYSHSA 180

Query: 181 LWRRSPGEPCAEKMEMSRQRRKAEKSMSGLQKRLLSCGSARNGNGEIELTGGESNPFLGT 240
           LWRR P E  AEK+E++RQRRKAEKS+ GLQ+RL+SCGS R+GNGEIE +G ESN  LGT
Sbjct: 181 LWRRKPKELRAEKIELARQRRKAEKSLLGLQQRLVSCGSERSGNGEIEFSGDESNSLLGT 240

Query: 241 CLQEMEDG--------SAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPP 300
           C QE+EDG        S  DGISHLSVPEV APAIE I G G   ++D+KA+ILP  RP 
Sbjct: 241 CFQEIEDGFGLPYENTSPKDGISHLSVPEVFAPAIEVIKGGGCPNSQDEKAKILPRARPL 300

Query: 301 VRFKLETTKTFLRGSRNLNAKMAGNRESVFWVRRDDERDEK--------KRRVEYIPRHS 356
           V FKLET KTF+ GS N N+KM G RESVFWVRR+DERD+K        KRRVEYI +HS
Sbjct: 301 VHFKLETCKTFIGGSMNSNSKMGGIRESVFWVRRNDERDQKHXXXXXXXKRRVEYILKHS 360

[Close]

BLAST of Carg00969 vs. TrEMBL
Match: tr|A0A2I4EME6|A0A2I4EME6_9ROSI (transcription initiation factor TFIID subunit 8 OS=Juglans regia OX=51240 GN=LOC108990909 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.4e-86
Identity = 188/361 (52.08%), Postives = 233/361 (64.54%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRG-NEFGREVSRIAVAQICNSAGFQRFKESALDALVDI 60
           MS G RN  K  EQ   D+    G N+FGR VS++AVAQ+C S GFQ FK+SAL+AL DI
Sbjct: 1   MSHGGRNGTKGNEQLDYDTSSRPGANDFGRAVSKVAVAQVCESVGFQGFKDSALEALADI 60

Query: 61  AIKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKN 120
           AI+YLR LGK A+ YAN +GR ECNVFDIIRGLE+LE+SQGF    E   CLA SG+V+ 
Sbjct: 61  AIRYLRDLGKTASVYANSSGRTECNVFDIIRGLEDLEASQGFLGGSEVKNCLAGSGTVRG 120

Query: 121 IVRYVNSVEEIPFAHPLPCFPVIRNRRAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPS 180
           IV YV   EEIPFA P+P FPVI++R+ IPSF+Q+GETPPG HI  WLPA PD HTY  +
Sbjct: 121 IVEYVGGAEEIPFAQPVPQFPVIKHRKLIPSFVQMGETPPGNHIPPWLPALPDPHTYIHT 180

Query: 181 TLWRRSPGEPCAEKMEMSRQRRKAEKSMSGLQKRLLSCGSARNGNGEI---ELTGGESNP 240
            +W     +P  +K+E +RQRRKAE+S+  LQ+RLLS GSA          E  G ++NP
Sbjct: 181 PVWNERATDPRTDKIEQARQRRKAERSLLSLQQRLLSSGSAGTSTSRSDAKESDGAQNNP 240

Query: 241 FLGTCLQEME-DGSAMDGIS----------HLSVPEVVAPAIEAINGCGLAKNEDDKARI 300
           FLG  LQ  E D S +   S          H+SV E  APAIEA+ G G + + +D   +
Sbjct: 241 FLGLPLQPGEKDVSLVVSPSKTSDEMVENIHVSVLEAFAPAIEAVKG-GFSDDGEDGKNV 300

Query: 301 LPIERPPVRFKLETTKTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSE 347
           LP  RP V+ K  T K FL  S +L+ +  G   +  WV RD+ERD+KKRR E I R S 
Sbjct: 301 LPNVRPAVQLKFRTGKKFLGESLDLSLQNKGVGRAASWVARDEERDDKKRRAELILRQST 360

[Close]

BLAST of Carg00969 vs. TrEMBL
Match: tr|A0A2N9I460|A0A2N9I460_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47334 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.1e-83
Identity = 183/370 (49.46%), Postives = 240/370 (64.86%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQ-QSSDSRKCRG-----NEFGREVSRIAVAQICNSAGFQRFKESALD 60
           MS G  ++ +  EQ +  DS +  G     ++FGR V+++AVAQIC + GFQ FK+SAL+
Sbjct: 1   MSHGGVSDTRGNEQNKECDSSRRAGAGAGSDDFGRAVTKVAVAQICENVGFQSFKDSALE 60

Query: 61  ALVDIAIKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANS 120
           AL DIAI+Y+R LGK  +FYAN+AGR ECNVFDI+RGLE+LE+SQGF  A E   CLA S
Sbjct: 61  ALTDIAIRYIRDLGKTGSFYANIAGRTECNVFDIVRGLEDLEASQGFSGASEVKNCLAGS 120

Query: 121 GSVKNIVRYVNSVEEIPFAHPLPCFPVIRNRRAIPSFLQIGETPPGKHIADWLPAFPDAH 180
           G+V+ I  YV+SVEEIPFA  LP FPVI+NR+ IPSF+Q+GETPPGKHI +WLPA PD H
Sbjct: 121 GTVRGIDEYVDSVEEIPFAQSLPRFPVIKNRKLIPSFVQMGETPPGKHIPEWLPALPDQH 180

Query: 181 TYDPSTLWRRSPGEPCAEKMEMSRQRRKAEKSMSGLQKRLL---SCGSARNGNGEIELTG 240
           TY  + +W     +P A+K+E +RQRRKAE+S+  LQ+RLL   S GS+ + +   EL G
Sbjct: 181 TYIHTPVWNERVTDPRADKIEQARQRRKAERSLLSLQQRLLFNGSVGSSASCSDVKELDG 240

Query: 241 GESNPFLGTCLQEME-----------DGSAMDGISHLSVPEVVAPAIEAINGCGLAKNED 300
            E NPFL   LQ  E               + G +H+SV E  APAIEA+        ED
Sbjct: 241 VEKNPFLQMPLQPGEKDVSPVVIPCKPSDEIGGRNHVSVLEAFAPAIEAVRDRFTDDGED 300

Query: 301 DKARILPIERPPVRFKLETTKTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYI 351
            K ++LP  RP ++ K  + K FL  S +L+ +  G      WV RD+ERD+K+RR E+I
Sbjct: 301 GK-KVLPDVRPGIQLKFRSGKKFLGESLDLSLQKKGVGRPASWVARDEERDDKRRRAEFI 360

[Close]

BLAST of Carg00969 vs. TrEMBL
Match: tr|M5WBH8|M5WBH8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa007701mg PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.4e-83
Identity = 178/349 (51.00%), Postives = 221/349 (63.32%), Query Frame = 0


Query: 5   ARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIAIKYL 64
           +R N  S E           +EFGR +S +AVAQIC S GFQ FKESALDAL DIAI+YL
Sbjct: 10  SRVNEPSSEAXXXXXXXXXXDEFGRAISTVAVAQICESVGFQSFKESALDALADIAIRYL 69

Query: 65  RHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNIVRYV 124
           R LGK+++FYANLAGR ECNVFDIIRG E+LES QGF  A E  QCLA SG V+ IV YV
Sbjct: 70  RDLGKMSSFYANLAGRTECNVFDIIRGSEDLESLQGFLGAAEVSQCLAGSGIVRGIVEYV 129

Query: 125 NSVEEIPFAHPLPCFPVIRNRRAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPSTLWRR 184
            S EEIPFA PLP FPVI+ RR IPSF Q+GE P  KH+ +WLPAFPD HTY  + +W  
Sbjct: 130 GSAEEIPFAQPLPRFPVIKQRRLIPSFEQMGEAPQSKHLPNWLPAFPDPHTYIQTPMWNE 189

Query: 185 SPGEPCAEKMEMSRQRRKAEKSMSGLQKRLLSCGSARNGNG---EIELTGGESNPFLGTC 244
              +P  +K+E +RQRRKAE+S+  LQ+RLL  G A    G    + L  G  N   G  
Sbjct: 190 RKTDPREDKIEQARQRRKAERSLLSLQQRLLCNGEASGSGGVSVAVPLVSGGGNDGKGLL 249

Query: 245 LQEMEDGSAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETTK 304
           LQ M  G   +G S  SV +   PAIEA+     +  +D++ ++LP  RP + FK  + K
Sbjct: 250 LQGM--GQGKNGGS--SVLDAFTPAIEAVKNGVWSDGDDERKQLLPDTRPAINFKFRSGK 309

Query: 305 TFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHE 351
            FL  S ++  +  G+    +W  RD+ERD+KKRR E+I R S EN  E
Sbjct: 310 KFLGESSDVRLQKKGSVRPAYWFGRDEERDDKKRRAEFILRQSMENPQE 354

The following BLAST results are available for this feature:

BLAST of Carg00969 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953103.1	4.2e-196	97.46	transcription initiation factor TFIID subunit 8-like isoform X1 [Cucurbita mosch...	[more]
XP_023540161.1	2.1e-195	96.62	transcription initiation factor TFIID subunit 8-like isoform X1 [Cucurbita pepo ...	[more]
XP_022953779.1	2.6e-182	92.68	transcription initiation factor TFIID subunit 8-like isoform X2 [Cucurbita mosch...	[more]
XP_022954508.1	5.9e-174	89.58	transcription initiation factor TFIID subunit 8-like isoform X3 [Cucurbita mosch...	[more]
XP_023540162.1	2.9e-173	88.73	transcription initiation factor TFIID subunit 8-like isoform X2 [Cucurbita pepo ...	[more]

BLAST of Carg00969 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34340.1	1.4e-57	38.20	TBP-associated factor 8	[more]
AT5G15570.1	6.7e-39	32.44	Bromodomain transcription factor	[more]
AT3G02160.1	5.7e-38	30.40	Bromodomain transcription factor	[more]
AT1G31240.1	2.2e-18	32.78	Bromodomain transcription factor	[more]

BLAST of Carg00969 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SYZ9\|TAF8_ARATH	2.6e-56	38.20	Transcription initiation factor TFIID subunit 8 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q5VWG9\|TAF3_HUMAN	5.8e-08	27.59	Transcription initiation factor TFIID subunit 3 OS=Homo sapiens OX=9606 GN=TAF3 ...	[more]
sp\|Q5F489\|TAF3_CHICK	1.3e-07	26.21	Transcription initiation factor TFIID subunit 3 OS=Gallus gallus OX=9031 GN=TAF3...	[more]
sp\|Q5HZG4\|TAF3_MOUSE	1.3e-07	26.90	Transcription initiation factor TFIID subunit 3 OS=Mus musculus OX=10090 GN=Taf3...	[more]
sp\|Q9P6P0\|TAF3_SCHPO	2.3e-04	27.41	Transcription initiation factor TFIID subunit 3 OS=Schizosaccharomyces pombe (st...	[more]

BLAST of Carg00969 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LDI8\|A0A0A0LDI8_CUCSA	6.0e-143	73.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740170 PE=4 SV=1	[more]
tr\|A0A1S3B6Z5\|A0A1S3B6Z5_CUCME	1.9e-141	72.51	transcription initiation factor TFIID subunit 8-like OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A2I4EME6\|A0A2I4EME6_9ROSI	1.4e-86	52.08	transcription initiation factor TFIID subunit 8 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2N9I460\|A0A2N9I460_FAGSY	1.1e-83	49.46	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47334 PE=4 SV=1	[more]
tr\|M5WBH8\|M5WBH8_PRUPE	2.4e-83	51.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa007701mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005669	transcription factor TFIID complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR037818	TAF8
IPR019473	TFIID_su8_C
IPR009072	Histone-fold
IPR006565	BTP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00969-RA	Carg00969-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 193..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR12321	CPG BINDING PROTEIN	coord: 1..243
None	No IPR available	PANTHER	PTHR12321	CPG BINDING PROTEIN	coord: 255..351
IPR006565	Bromodomain associated domain	SMART	SM00576	17neu3	coord: 25..101 e-value: 6.6E-26 score: 102.1
IPR006565	Bromodomain associated domain	PFAM	PF07524	Bromo_TP	coord: 26..95 e-value: 2.1E-20 score: 72.4
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 23..106 e-value: 9.5E-19 score: 68.9
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 36..90
IPR019473	Transcription factor TFIID, subunit 8, C-terminal	PFAM	PF10406	TAF8_C	coord: 162..210 e-value: 9.3E-11 score: 42.0
IPR019473	Transcription factor TFIID, subunit 8, C-terminal	CDD	cd08049	TAF8	coord: 162..214 e-value: 2.5051E-12 score: 60.3643
IPR037818	Transcription initiation factor TFIID subunit 8	PANTHER	PTHR12321:SF53	BROMODOMAIN TRANSCRIPTION FACTOR	coord: 255..351
IPR037818	Transcription initiation factor TFIID subunit 8	PANTHER	PTHR12321:SF53	BROMODOMAIN TRANSCRIPTION FACTOR	coord: 1..243

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00969	Cla018315	Watermelon (97103) v1	carwmB0151
Carg00969	Csa6G446430	Cucumber (Chinese Long) v2	carcuB0181
Carg00969	ClCG04G009270	Watermelon (Charleston Gray)	carwcgB0155
Carg00969	ClCG10G020150	Watermelon (Charleston Gray)	carwcgB0147
Carg00969	CSPI06G24650	Wild cucumber (PI 183967)	carcpiB0187
Carg00969	Cucsa.124640	Cucumber (Gy14) v1	carcgyB0189
Carg00969	CmaCh06G003910	Cucurbita maxima (Rimu)	carcmaB0216
Carg00969	CmaCh07G009010	Cucurbita maxima (Rimu)	carcmaB0217
Carg00969	CmaCh14G002220	Cucurbita maxima (Rimu)	carcmaB0203
Carg00969	CmaCh03G012150	Cucurbita maxima (Rimu)	carcmaB0209
Carg00969	CmoCh14G002130	Cucurbita moschata (Rifu)	carcmoB0214
Carg00969	CmoCh07G009320	Cucurbita moschata (Rifu)	carcmoB0228
Carg00969	CmoCh06G003850	Cucurbita moschata (Rifu)	carcmoB0227
Carg00969	CmoCh03G012120	Cucurbita moschata (Rifu)	carcmoB0220
Carg00969	Lsi03G020100	Bottle gourd (USVL1VR-Ls)	carlsiB141
Carg00969	Cp4.1LG10g04580	Cucurbita pepo (Zucchini)	carcpeB0221
Carg00969	Cp4.1LG03g01590	Cucurbita pepo (Zucchini)	carcpeB0230
Carg00969	Cp4.1LG19g03920	Cucurbita pepo (Zucchini)	carcpeB0227
Carg00969	CsGy6G024060	Cucumber (Gy14) v2	carcgybB0177
Carg00969	CsaV3_6G039860	Cucumber (Chinese Long) v3	carcucB0187
Carg00969	Cla97C10G203300	Watermelon (97103) v2	carwmbB0159
Carg00969	Cla97C04G076000	Watermelon (97103) v2	carwmbB0167
Carg00969	Bhi03G001208	Wax gourd	carwgoB0209

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg00969	Carg03756	Silver-seed gourd	carcarB180

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00969	Wax gourd	carwgoB0196
Carg00969	Silver-seed gourd	carcarB184
Carg00969	Silver-seed gourd	carcarB187
Carg00969	Cucumber (Gy14) v2	carcgybB0170
Carg00969	Cucumber (Gy14) v1	carcgyB0196
Carg00969	Cucumber (Gy14) v1	carcgyB0202
Carg00969	Cucurbita pepo (Zucchini)	carcpeB0233
Carg00969	Wild cucumber (PI 183967)	carcpiB0181
Carg00969	Wild cucumber (PI 183967)	carcpiB0188
Carg00969	Cucumber (Chinese Long) v2	carcuB0175
Carg00969	Cucumber (Chinese Long) v3	carcucB0181
Carg00969	Cucumber (Chinese Long) v3	carcucB0189
Carg00969	Bottle gourd (USVL1VR-Ls)	carlsiB138
Carg00969	Melon (DHL92) v3.5.1	carmeB0158
Carg00969	Melon (DHL92) v3.5.1	carmeB0161
Carg00969	Melon (DHL92) v3.6.1	carmedB0162
Carg00969	Watermelon (Charleston Gray)	carwcgB0152
Carg00969	Watermelon (97103) v1	carwmB0146
Carg00969	Watermelon (97103) v1	carwmB0152
Carg00969	Watermelon (97103) v2	carwmbB0164