Carg00919 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00919
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Phytosulfokine 3, putative
Location	Cucurbita_argyrosperma_scaffold_002 : 41905 .. 42376 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTCTCTCTCTTTGCTTTCCTTCTTCTTCTTCTTCTTCTTCATCGAAGCACTAAAGAAAATGAACCAGAGCTCCCATGGCTTGTTCTTCATTTTCCTCCTCCTCTCCCAATCAGCCACTGCACGTTTCCTACCAACCAAACAAGGTAAACCCACTTCAAAAAACCCTTCCTTTTTCACTTCCACCTTCCATTTTCTCACCCTTTCTTGCTCTTTCCCGGAAAATTTGCAGGTTTTGAAGAAACCCACAACAAGCTCAGCCATGGAATGATCCAACCAGATTCATGGCCAGATTTCCCCCAAGTAAGTACCCATCATCTCTCTTCTTTTAAGCTTTCTTCTTTGGATTTTAATGGCGGATTTCCCTTTCATTTGTAGACAATAAGAGAAGAAGATGAAGAATGGGAGAAGACAAGGATGATGTTAGAAGCACACTTGGATTATGTTTATACACAAAATAAGAAGCCTTGA

mRNA sequence

CTCTCTCTCTCTCTTTGCTTTCCTTCTTCTTCTTCTTCTTCTTCATCGAAGCACTAAAGAAAATGAACCAGAGCTCCCATGGCTTGTTCTTCATTTTCCTCCTCCTCTCCCAATCAGCCACTGCACGTTTCCTACCAACCAAACAAGGTTTTGAAGAAACCCACAACAAGCTCAGCCATGGAATGATCCAACCAGATTCATGGCCAGATTTCCCCCAAACAATAAGAGAAGAAGATGAAGAATGGGAGAAGACAAGGATGATGTTAGAAGCACACTTGGATTATGTTTATACACAAAATAAGAAGCCTTGA

Coding sequence (CDS)

ATGAACCAGAGCTCCCATGGCTTGTTCTTCATTTTCCTCCTCCTCTCCCAATCAGCCACTGCACGTTTCCTACCAACCAAACAAGGTTTTGAAGAAACCCACAACAAGCTCAGCCATGGAATGATCCAACCAGATTCATGGCCAGATTTCCCCCAAACAATAAGAGAAGAAGATGAAGAATGGGAGAAGACAAGGATGATGTTAGAAGCACACTTGGATTATGTTTATACACAAAATAAGAAGCCTTGA

Protein sequence

MNQSSHGLFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQPDSWPDFPQTIREEDEEWEKTRMMLEAHLDYVYTQNKKP

Homology

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BLAST of Carg00919 vs. NCBI nr
Match: XP_022942814.1 (putative phytosulfokines 6 [Cucurbita moschata])

HSP 1 Score: 144.4 bits (363), Expect = 1.7e-31
Identity = 72/84 (85.71%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 1  MNQSSHGLFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQPDSWPDFPQTIRE--ED 60
          MNQSSHGLFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQPDSWPDFPQ IRE    
Sbjct: 1  MNQSSHGLFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQPDSWPDFPQIIREXXXX 60

Query: 61 EEWEKTRMMLEAHLDYVYTQNKKP 83
                RMMLEAHLDYVYTQN+KP
Sbjct: 61 XXXXXRRMMLEAHLDYVYTQNEKP 84

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BLAST of Carg00919 vs. NCBI nr
Match: XP_023005727.1 (putative phytosulfokines 6 [Cucurbita maxima])

HSP 1 Score: 112.5 bits (280), Expect = 7.0e-22
Identity = 61/90 (67.78%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 1  MNQSSHGLFFIF-----LLLSQSATARFLPTKQGFEETHNKLSHGMIQPDSWPDFPQTIR 60
          MNQSSHG    F       LSQSATARFLPTKQGFEETHNKLSHGMIQ DSWPDFPQ IR
Sbjct: 1  MNQSSHGFSSFFXXXXXXXLSQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFPQIIR 60

Query: 61 ---EEDEEWEKTRMMLEAHLDYVYTQNKKP 83
                         LEAHLDYVYTQN+KP
Sbjct: 61 XXXXXXXXXXXXXXXLEAHLDYVYTQNEKP 90

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BLAST of Carg00919 vs. NCBI nr
Match: XP_022935155.1 (uncharacterized protein LOC111442110 [Cucurbita moschata])

HSP 1 Score: 89.0 bits (219), Expect = 8.3e-15
Identity = 49/95 (51.58%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 1  MNQSSHGL--------FFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQPDSWPDFPQ 60
          MNQSSHG                      RF   KQG  ETH KL+HG +Q DSWPDFP 
Sbjct: 1  MNQSSHGFXXXXXXXXXXXXXXXXXXXXXRFPAAKQGLGETHEKLTHGGVQADSWPDFPH 60

Query: 61 TI------REEDEEWEKTRMMLEAHLDYVYTQNKK 82
           I       EE+E WEK +MMLEAHLDYVYTQN K
Sbjct: 61 IIGGREKGEEEEEGWEKRKMMLEAHLDYVYTQNVK 95

[Close]

BLAST of Carg00919 vs. NCBI nr
Match: XP_022983167.1 (uncharacterized protein LOC111481800 [Cucurbita maxima])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 50/95 (52.63%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 1  MNQSSHGL-------FFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQPDSWPDFPQT 60
          MNQSSHG                   +ARF   KQG  ETH KL+HG++Q DSW DFP  
Sbjct: 1  MNQSSHGFXXXXXXXXXXXXXXXXXTSARFPAAKQGLGETHEKLTHGVVQADSWADFPHI 60

Query: 61 I--REEDEE-----WEKTRMMLEAHLDYVYTQNKK 82
          I  RE+ EE     WEK +MMLEAHLDYVYTQN K
Sbjct: 61 IGGREKGEEEXXEGWEKRKMMLEAHLDYVYTQNVK 95

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BLAST of Carg00919 vs. NCBI nr
Match: XP_023528216.1 (putative phytosulfokines 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-14
Identity = 48/95 (50.53%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 1  MNQSSHGL--------FFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQPDSWPDFPQ 60
          MNQSSHG                      RF   KQG  ETH KL+HG++Q DSW DFP 
Sbjct: 1  MNQSSHGFXXXXXXXXXXXXXXXXXXXXXRFPAAKQGLGETHEKLTHGVVQADSWADFPH 60

Query: 61 TI------REEDEEWEKTRMMLEAHLDYVYTQNKK 82
           I       EE+E WEK +MMLEAHLDYVYTQN K
Sbjct: 61 MIGGREKGEEEEEGWEKRKMMLEAHLDYVYTQNVK 95

[Close]

BLAST of Carg00919 vs. TrEMBL
Match: tr|A0A1S4DUI1|A0A1S4DUI1_CUCME (uncharacterized protein LOC107990603 OS=Cucumis melo OX=3656 GN=LOC107990603 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.7e-09
Identity = 38/70 (54.29%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 21  ARFLPTKQGFEETHNKLSHG-MIQP-DSWPDFPQTIRE------EDEEWEKTRMMLEAHL 80
           ARF P+K G EETH K+S+G M+Q  DSWPDFP   RE               MMLEAHL
Sbjct: 114 ARFPPSKHGIEETHKKISYGSMVQSGDSWPDFPHVKREXXXXXXXXXXXXXXXMMLEAHL 173

Query: 81  DYVYTQNKKP 83
           DYVYTQ++ P
Sbjct: 174 DYVYTQHENP 183

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BLAST of Carg00919 vs. TrEMBL
Match: tr|A0A0A0LEF2|A0A0A0LEF2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G750390 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 29 GFEETHNKLSHG-MIQ-PDSWPDFPQTIRE----EDEEWEKTRMMLEAHLDYVYTQNKKP 83
          G EETH K+S+G M+Q  DS PDFP    E    E+EE EK +MMLEAHLDYVYTQN+ P
Sbjct: 8  GIEETHRKISYGSMVQLGDSLPDFPHIKGEKEVGEEEEGEKRKMMLEAHLDYVYTQNENP 67

[Close]

BLAST of Carg00919 vs. TrEMBL
Match: tr|A0A061ESV9|A0A061ESV9_THECC (Phytosulfokine 3, putative OS=Theobroma cacao OX=3641 GN=TCM_022449 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.1e-06
Identity = 37/82 (45.12%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 8  LFFIFLLLSQSATARFLPTKQGFEETH-NKLSH-GMIQPDSWPDF-----PQTIREEDEE 67
          L F FLL S S +AR L  KQG +E   N+++  G++  D   DF      +   E+DEE
Sbjct: 12 LLFAFLLCSYSTSARLLAQKQGEKELKANQINQAGLLTTDMKEDFSNLMGSEECHEKDEE 71

Query: 68 WEKTRMMLEAHLDYVYTQNKKP 83
            K RM+ EAHLDY+YTQ+ KP
Sbjct: 72 CLKRRMIAEAHLDYIYTQHHKP 93

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BLAST of Carg00919 vs. TrEMBL
Match: tr|A0A2P4HPB8|A0A2P4HPB8_QUESU (Putative phytosulfokines 6 OS=Quercus suber OX=58331 GN=CFP56_30396 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-05
Identity = 34/81 (41.98%), Postives = 45/81 (55.56%), Query Frame = 0


Query: 8  LFFIFLLLSQSATARFLPTKQGFEETH-NKLSHGMIQPDSWPDFP-----QTIREEDEEW 67
          + F+FL  S  A+AR LP KQG+EE   N +SH         D       +   + DEE 
Sbjct: 10 VIFLFLFCSFLASARLLPPKQGYEEVKANGISHAAGSLTDLKDISDLMGLEECGDNDEEC 69

Query: 68 EKTRMMLEAHLDYVYTQNKKP 83
           + RM+ EAHLDY+YTQ+ KP
Sbjct: 70 LQRRMIAEAHLDYIYTQHHKP 90

[Close]

BLAST of Carg00919 vs. TrEMBL
Match: tr|A0A0D2MFC9|A0A0D2MFC9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G242400 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.9e-05
Identity = 39/82 (47.56%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 8  LFFIFLLL-SQSATARFLPTKQGFEETHNKLSH-GMIQPDSWPDFPQTI-----REEDEE 67
          LF  FLLL S S +ARFL       E   K +   MIQ D   DF + +      E+DEE
Sbjct: 12 LFLAFLLLCSSSVSARFLLQINNHGEKELKANEMMMIQADRKDDFSELMGAEECYEQDEE 71

Query: 68 WEKTRMMLEAHLDYVYTQNKKP 83
            K RMM +AHLDY+YTQN KP
Sbjct: 72 CVKRRMMADAHLDYIYTQNHKP 93

The following BLAST results are available for this feature:

BLAST of Carg00919 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942814.1	1.7e-31	85.71	putative phytosulfokines 6 [Cucurbita moschata]	[more]
XP_023005727.1	7.0e-22	67.78	putative phytosulfokines 6 [Cucurbita maxima]	[more]
XP_022935155.1	8.3e-15	51.58	uncharacterized protein LOC111442110 [Cucurbita moschata]	[more]
XP_022983167.1	1.4e-14	52.63	uncharacterized protein LOC111481800 [Cucurbita maxima]	[more]
XP_023528216.1	2.4e-14	50.53	putative phytosulfokines 6 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg00919 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg00919 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg00919 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DUI1\|A0A1S4DUI1_CUCME	7.7e-09	54.29	uncharacterized protein LOC107990603 OS=Cucumis melo OX=3656 GN=LOC107990603 PE=...	[more]
tr\|A0A0A0LEF2\|A0A0A0LEF2_CUCSA	3.8e-08	61.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G750390 PE=4 SV=1	[more]
tr\|A0A061ESV9\|A0A061ESV9_THECC	6.1e-06	45.12	Phytosulfokine 3, putative OS=Theobroma cacao OX=3641 GN=TCM_022449 PE=4 SV=1	[more]
tr\|A0A2P4HPB8\|A0A2P4HPB8_QUESU	3.0e-05	41.98	Putative phytosulfokines 6 OS=Quercus suber OX=58331 GN=CFP56_30396 PE=4 SV=1	[more]
tr\|A0A0D2MFC9\|A0A0D2MFC9_GOSRA	3.9e-05	47.56	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G242400 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **Biological Process**
Term	Definition
GO:0008283	cell proliferation

Vocabulary: **Molecular Function**
Term	Definition
GO:0008083	growth factor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR009438	Phytosulfokine

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
biological_process	GO:0040007	growth
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008083	growth factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00919-RA	Carg00919-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 10..81 e-value: 5.2E-8 score: 33.7
IPR009438	Phytosulfokine	PANTHER	PTHR33285	FAMILY NOT NAMED	coord: 2..82
None	No IPR available	PANTHER	PTHR33285:SF13	SUBFAMILY NOT NAMED	coord: 2..82

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00919	Csa3G750390	Cucumber (Chinese Long) v2	carcuB0175
Carg00919	ClCG10G019330	Watermelon (Charleston Gray)	carwcgB0147
Carg00919	CSPI03G34210	Wild cucumber (PI 183967)	carcpiB0181
Carg00919	CmaCh06G004490	Cucurbita maxima (Rimu)	carcmaB0216
Carg00919	CmaCh14G002820	Cucurbita maxima (Rimu)	carcmaB0203
Carg00919	CmoCh14G002700	Cucurbita moschata (Rifu)	carcmoB0214
Carg00919	CmoCh06G004480	Cucurbita moschata (Rifu)	carcmoB0227
Carg00919	Lsi03G019350	Bottle gourd (USVL1VR-Ls)	carlsiB141
Carg00919	Cp4.1LG08g10330	Cucurbita pepo (Zucchini)	carcpeB0233
Carg00919	Cp4.1LG03g01030	Cucurbita pepo (Zucchini)	carcpeB0230
Carg00919	CsGy3G031990	Cucumber (Gy14) v2	carcgybB0170
Carg00919	CsaV3_3G036860	Cucumber (Chinese Long) v3	carcucB0181
Carg00919	Cla97C10G202430	Watermelon (97103) v2	carwmbB0159
Carg00919	Bhi11G001674	Wax gourd	carwgoB0196

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00919	Wax gourd	carwgoB0209
Carg00919	Silver-seed gourd	carcarB180
Carg00919	Cucumber (Gy14) v1	carcgyB0200
Carg00919	Melon (DHL92) v3.5.1	carmeB0161
Carg00919	Melon (DHL92) v3.6.1	carmedB0162
Carg00919	Watermelon (97103) v1	carwmB0146
Carg00919	Watermelon (97103) v2	carwmbB0169