Carg00781 (gene) Silver-seed gourd

Overview
NameCarg00781
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_014 : 1431229 .. 1432711 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATCTTGAGGCTTCACCAGTGTGTGTATGATGTATATCTGATCTTCATGTTCGATGCTTATTGCTCTTGTTTTCATTTGTTTTAAACCTGTGTTATAAATATCCATGATTTCTCCGATGAAAACTTCATGAGATTAAGGGTGTTAAAATTACTTATACAATTCCTCCATTGCTCTTTGCTTAGATAGGCTGGAATTTTCATCGCTAAAGTCGACACATTCCAAACAACCTACAGAGATCAATACTCCTGAGAGGGATTATGACATGAATTTGACAATAACAAATCACTAAAAAGATCATAATTTTATTACTTCAAAAAGCTCTAATGTTGTCTCTACATATAATAATCTAGGCCGGATAACCGTATGGTAGTTCAGAGACGGAGAGATTCAGAGCATCCAAGTGCCTGAAACCGTACTTTCTAAGCACCTGATTATCAGCAAAGTTCAAAGCTTTAAGCATTCCATCCCAACAGGAACTACCAGAATACATCTGATTGTGATTCCCACTGCAAGGCTGACACCCCGTGAAGTGGGTGATAAAAGGCCTTCTCCAACCCCCTTTCCCACTTCCTGCATCTCTCAAATACTTCTCCCTAAACGCACCGTATTGCTCGCTCACCTTCTCTGCGTGCCGCCGCCGCAGCTCCCCAGCCTCTCTCTCCATCTCCGTGTACCTCTCGGTGATGTTATCAAAAGTTCCCACAATCTCCGCCCAGTACCCTTCGAAGTAATACTCCCCTTCTAAATAAATCTTGTCCCCCCATTTCTCTTTCTCCTTGTACAGTAGATAAACCAGGCCCGTCTGATCGTCCGACTCTGGGAACTGCTTGTCTGGAATCGTCGATTTGAGGACCTGGCCCCACTTCTCGTAATTTGGGGTTTGTGGGCCCATGCTGGCCCACACTTCCATGAAGTCCATGGACCACTGGCAGTTTCTGATCAGAAACACGCCGGCGTTGAGCGCCGTCCAGCTTTTCCGATCGTAAATCAGGTGGGCCCAGCCGTGAGCGACAAAGTTGTGGTTTTTGTATCGATCCAGTGGGAGTTTGAATTCCATGTCGGTGAACAGAGCGTCCGAGTCCACCCACCAAATCCACTCGGCCTCTGGGTGAGCTATCATCGCAGCTCGAACCACCGGCAGCTTCGCCCAGTACGAGAACATTTCCGGGTGCAGCAGTGCATTGTTGTAGAATATATCGTAGCCGTGGATTCGGCAGTAGTCCACTTTGTTCTTGAAGAATCTCAGAAGCAAGTGATCGCCAATGGGGTTCGGGCACGGCGCAGGCTGCGACGCCGAGAGAAGAAGCACCCTCTCGCCGGCTCCGGTGGCGAACGAAGGGTGCAGTTTCAGCCAGTGACGGCGCTTGTCGTCCCATTTCTCGATCCGCTTCTCTATGGAGTAGCTGAGTTTGGGGTCATCGTAAAAGGTAATATCCGGTGGGTCGTAGGGCAGAGATGGATGGCTTTGAGAATTTAG

mRNA sequence

ATGTCTATCTTGAGGCTTCACCAAGACGGAGAGATTCAGAGCATCCAAGTGCCTGAAACCGTACTTTCTAAGCACCTGATTATCAGCAAAGTTCAAAGCTTTAAGCATTCCATCCCAACAGGAACTACCAGAATACATCTGATTGTGATTCCCACTGCAAGGCTGACACCCCGTGAAGTGGGTGATAAAAGGCCTTCTCCAACCCCCTTTCCCACTTCCTGCATCTCTCAAATACTTCTCCCTAAACGCACCGTATTGCTCGCTCACCTTCTCTGCGTGCCGCCGCCGCAGCTCCCCAGCCTCTCTCTCCATCTCCGTGTACCTCTCGAATCTCAGAAGCAAGTGATCGCCAATGGGGTTCGGGCACGGCGCAGGCTGCGACGCCGAGAGAAGAAGCACCCTCTCGCCGGCTCCGGTGGCGAACGAAGGGTGCAGTTTCAGCCAGTGACGGCGCTTGTCGTCCCATTTCTCGATCCGCTTCTCTATGGAGTAGCTGAGTTTGGGGTCATCGTAAAAGGTAATATCCGGTGGGTCGTAGGGCAGAGATGGATGGCTTTGAGAATTTAG

Coding sequence (CDS)

ATGTCTATCTTGAGGCTTCACCAAGACGGAGAGATTCAGAGCATCCAAGTGCCTGAAACCGTACTTTCTAAGCACCTGATTATCAGCAAAGTTCAAAGCTTTAAGCATTCCATCCCAACAGGAACTACCAGAATACATCTGATTGTGATTCCCACTGCAAGGCTGACACCCCGTGAAGTGGGTGATAAAAGGCCTTCTCCAACCCCCTTTCCCACTTCCTGCATCTCTCAAATACTTCTCCCTAAACGCACCGTATTGCTCGCTCACCTTCTCTGCGTGCCGCCGCCGCAGCTCCCCAGCCTCTCTCTCCATCTCCGTGTACCTCTCGAATCTCAGAAGCAAGTGATCGCCAATGGGGTTCGGGCACGGCGCAGGCTGCGACGCCGAGAGAAGAAGCACCCTCTCGCCGGCTCCGGTGGCGAACGAAGGGTGCAGTTTCAGCCAGTGACGGCGCTTGTCGTCCCATTTCTCGATCCGCTTCTCTATGGAGTAGCTGAGTTTGGGGTCATCGTAAAAGGTAATATCCGGTGGGTCGTAGGGCAGAGATGGATGGCTTTGAGAATTTAG

Protein sequence

MSILRLHQDGEIQSIQVPETVLSKHLIISKVQSFKHSIPTGTTRIHLIVIPTARLTPREVGDKRPSPTPFPTSCISQILLPKRTVLLAHLLCVPPPQLPSLSLHLRVPLESQKQVIANGVRARRRLRRREKKHPLAGSGGERRVQFQPVTALVVPFLDPLLYGVAEFGVIVKGNIRWVVGQRWMALRI
Homology
[Close]
BLAST of Carg00781 vs. NCBI nr
Match: PQM41101.1 (hypothetical protein Pyn_07319 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 74.7 bits (182), Expect = 3.7e-10
Identity = 43/83 (51.81%), Postives = 51/83 (61.45%), Query Frame = 0 

Query: 26  LIISKVQSFKHSIPTGTTRIHLIVIPTARLTPREVGDKRPSPTPFPTSCISQILLPKRTV 85
           L I  VQS  H +PT    ++ +V P ARLTP EV DKRPS    P + I QILL  R++
Sbjct: 10  LTICIVQSLLHPLPTSFPSVNRVVFPAARLTPGEVRDKRPSEFILPIALILQILLSDRSI 69

Query: 86  LLAHLLCVPPPQLPSLSLHLRVP 109
             AHLLCV PPQ   LS+ L VP
Sbjct: 70  EQAHLLCVSPPQHYHLSIDLHVP 92

[Close]
BLAST of Carg00781 vs. NCBI nr
Match: PQM37721.1 (hypothetical protein Pyn_13778 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 74.3 bits (181), Expect = 4.9e-10
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 0 

Query: 23  SKHLIISKVQSFKHSIPTGTTRIHLIVIPTARLTPREVGDKRPSPTPFPTSCISQILLPK 82
           +K L I  VQS  H  PT    +  +V P ARLTP EV DKRPS    P + I QILL  
Sbjct: 7   AKSLTICIVQSLLHPHPTSFPSVSRVVFPAARLTPSEVRDKRPSEFILPIALILQILLSD 66

Query: 83  RTVLLAHLLCVPPPQLPSLSLHLRVP 109
           R++  AHLLCV PPQ   LS+ L VP
Sbjct: 67  RSIEQAHLLCVSPPQHYHLSIDLHVP 92

The following BLAST results are available for this feature:
BLAST of Carg00781 vs. NCBI nr
Match NameE-valueIdentityDescription
PQM41101.13.7e-1051.81hypothetical protein Pyn_07319 [Prunus yedoensis var. nudiflora][more]
PQM37721.14.9e-1051.16hypothetical protein Pyn_13778 [Prunus yedoensis var. nudiflora][more]
BLAST of Carg00781 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg00781 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg00781 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00781-RACarg00781-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00781CmaCh03G009040Cucurbita maxima (Rimu)carcmaB0567
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg00781Silver-seed gourdcarcarB001
Carg00781Silver-seed gourdcarcarB344
Carg00781Silver-seed gourdcarcarB401
Carg00781Silver-seed gourdcarcarB423
Carg00781Silver-seed gourdcarcarB427
Carg00781Cucumber (Gy14) v2carcgybB0409
Carg00781Cucumber (Gy14) v2carcgybB0417
Carg00781Cucumber (Gy14) v2carcgybB0418
Carg00781Cucumber (Gy14) v1carcgyB0467
Carg00781Cucumber (Gy14) v1carcgyB0474
Carg00781Cucumber (Gy14) v1carcgyB0475
Carg00781Cucurbita maxima (Rimu)carcmaB0555
Carg00781Cucurbita maxima (Rimu)carcmaB0557
Carg00781Cucurbita maxima (Rimu)carcmaB0563
Carg00781Cucurbita maxima (Rimu)carcmaB0571
Carg00781Cucurbita moschata (Rifu)carcmoB0542
Carg00781Cucurbita moschata (Rifu)carcmoB0545
Carg00781Cucurbita moschata (Rifu)carcmoB0548
Carg00781Cucurbita moschata (Rifu)carcmoB0551
Carg00781Cucurbita moschata (Rifu)carcmoB0554
Carg00781Cucurbita pepo (Zucchini)carcpeB0554
Carg00781Cucurbita pepo (Zucchini)carcpeB0563
Carg00781Cucurbita pepo (Zucchini)carcpeB0567
Carg00781Cucurbita pepo (Zucchini)carcpeB0570
Carg00781Cucurbita pepo (Zucchini)carcpeB0573
Carg00781Wild cucumber (PI 183967)carcpiB0436
Carg00781Wild cucumber (PI 183967)carcpiB0445
Carg00781Wild cucumber (PI 183967)carcpiB0446
Carg00781Cucumber (Chinese Long) v2carcuB0431
Carg00781Cucumber (Chinese Long) v2carcuB0440
Carg00781Cucumber (Chinese Long) v2carcuB0441
Carg00781Cucumber (Chinese Long) v3carcucB0433
Carg00781Cucumber (Chinese Long) v3carcucB0441
Carg00781Cucumber (Chinese Long) v3carcucB0442
Carg00781Bottle gourd (USVL1VR-Ls)carlsiB364
Carg00781Bottle gourd (USVL1VR-Ls)carlsiB365
Carg00781Bottle gourd (USVL1VR-Ls)carlsiB372
Carg00781Melon (DHL92) v3.5.1carmeB0406
Carg00781Melon (DHL92) v3.5.1carmeB0411
Carg00781Melon (DHL92) v3.5.1carmeB0414
Carg00781Melon (DHL92) v3.6.1carmedB0410
Carg00781Melon (DHL92) v3.6.1carmedB0415
Carg00781Melon (DHL92) v3.6.1carmedB0418
Carg00781Watermelon (Charleston Gray)carwcgB0403
Carg00781Watermelon (Charleston Gray)carwcgB0397
Carg00781Watermelon (97103) v1carwmB0400
Carg00781Watermelon (97103) v1carwmB0407
Carg00781Watermelon (97103) v2carwmbB0426
Carg00781Watermelon (97103) v2carwmbB0433
Carg00781Wax gourdcarwgoB0487
Carg00781Wax gourdcarwgoB0491