Carg00695 (gene) Silver-seed gourd

Overview
NameCarg00695
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA replication licensing factor MCM2
LocationCucurbita_argyrosperma_scaffold_014 : 1018778 .. 1020636 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGAATGGAGTTCATTCTTGAAGGAAAGAGGTAATATTGCTTTTAGTCCTTTCCAGATATCCACCATTTCCTATTCTACAATATTCCGGAACTGAATGTTGATGAAATATTGCCTTTTGAAGTTCTAATTCATTTTACTAATTGTGTTTGAACAGAGTTTTGAAATTTCCTGGAAGACAAAGGTGGGAATCTGGTTTTTCACCGTACAAATGTGGACTACATTTCCTGTAGTGTTTTTAAGGTTTGGTTCATGCTTCCTTTTTTGTAACTTACGGCACTGACATGATAATAAAGGGTAATAGTCCTGTTTGATGTACTTTCCTTAATCGAAGTTTATCTTTTCTAGTTCATTGTCAAAGCATGGCTCTAAATTCGCAGCTTATTTGGTGTTCTAATGATTGGTGTTATTCGGACATTAATTTGATGTCTGGTGGGACATTTGCAAATATGGAAGTTCCTACAAAATTGATTGTTGTCGATCAATCAATGAAAAGATGAAGCGTCCTTTCAAATTGTCTACTAAGAGTTGAAAGGAATATACAACGATCAGTCAAAGCCTGGATTTCCTTTTAACGATCGAAACCAGAGATTTTAAACAAAGCATACCACAATCTTTCGCTACCCAAGTCTCTAGGCTATAAGTGCAAGTGATCAGTGAAACAACATTAGAAGTTCAAGTAGAAACACAGACAAGAATGTCCAACTATTCAAATCAAGTTAGGAGCTAAGATTAAACTAAAGCAATGGTGCTTTCACCACCGGGTGGTTTACGAACACCCCCAAAGTAGTCCCTTGATTCCGCCTTCCCATCAGAAAAGATGTCGTTTCCGCTCATCTCCCTTAGCTTGGCCGAGCTCAGCGATTTCTCGGATGAACCCGGTGGAGCATCTCCTTTAAATATATCATTACCAGTTAACTCTTGAAACTTCTGGTTGTGTAGTTTCTTAGCTGTCTTCATCACTGGATCTTCTCCAAACAGGATGTTACTCTGGCCTCCAGCAGGCTGTAAAGATGGACAACAAACCAACTTCATTTCGAGCACTATGGCTCAGAGGCAAGGATATGAAAGATCAAGTCGAGTCCTATGGAAATCTACTTCCAATCCAGTACAACTCTCTAGAACGAAAAAAAGTAGTCATGGGATTATCAGATTGGAAAAAACACTTCAATATTCATTAATATGGGGGGATTCAACATGAGTTAAATGTTTCAGCTTTCAAGGTAAAAGACGGTAACACCCAAGCCCATCACTAGCCGATATTGTTCTCTTTGGGTCTTCCCTTTCAGGTTTCCCCTCAAGGTTTTTAAAACGCAGGAAAGGTTTCCACACCTTTATAAAGAATGTTCCGTTTTCCTCTCAACCAAGGTGAGATCTTACAAAAACACTATCAAGATAGAGAAAAAAGAGAAGTTATCTCATCAATGCTAAAGCTAAAATGAATCTTGTGTAGCGTTGATACGAAAGAGTAAACACAAAGACAACTGAATGGAAACGTGCACGCCTGAATAACCGTTTAAATTCTTCAACTAAGGCAAACAAAATCGAAAGCAAAGACAATCATAGAAGCAAGAAGTGAATTCAAGATCACGGTAAGAAGTAAACTCACATTTGAAACTTTAACAGATGTTCTGAGGGTCCTAGGTGCTGGTTCACCCATGTCTTTACTTTCTTTCGACTCCAAGCTCCGCGAGGCTGCCAACGATCGTGGTGTTATTTCAGGAGGAGCTCCGAAGATGTCATGTCCACTAAGCTCCTTGTTCTTAGCATCTGATGTCTGCTTCTTACTCCTGGCATCAGAATCACTCTGCAATGTCCCACTTAACTCACGTTGCTTTGCCACCTCTGGAATTGAA

mRNA sequence

ATGTCAAGAATGGAGTTCATTCTTGAAGGAAAGAGGCAAACAAAATCGAAAGCAAAGACAATCATAGAAGCAAGAAGTGAATTCAAGATCACGGTAAGAAGTAAACTCACATTTGAAACTTTAACAGATGTTCTGAGGGTCCTAGGTGCTGGTTCACCCATGTCTTTACTTTCTTTCGACTCCAAGCTCCGCGAGGCTGCCAACGATCGTGGTGTTATTTCAGGAGGAGCTCCGAAGATGTCATGTCCACTAAGCTCCTTGTTCTTAGCATCTGATGTCTGCTTCTTACTCCTGGCATCAGAATCACTCTGCAATGTCCCACTTAACTCACGTTGCTTTGCCACCTCTGGAATTGAA

Coding sequence (CDS)

ATGTCAAGAATGGAGTTCATTCTTGAAGGAAAGAGGCAAACAAAATCGAAAGCAAAGACAATCATAGAAGCAAGAAGTGAATTCAAGATCACGGTAAGAAGTAAACTCACATTTGAAACTTTAACAGATGTTCTGAGGGTCCTAGGTGCTGGTTCACCCATGTCTTTACTTTCTTTCGACTCCAAGCTCCGCGAGGCTGCCAACGATCGTGGTGTTATTTCAGGAGGAGCTCCGAAGATGTCATGTCCACTAAGCTCCTTGTTCTTAGCATCTGATGTCTGCTTCTTACTCCTGGCATCAGAATCACTCTGCAATGTCCCACTTAACTCACGTTGCTTTGCCACCTCTGGAATTGAA

Protein sequence

MSRMEFILEGKRQTKSKAKTIIEARSEFKITVRSKLTFETLTDVLRVLGAGSPMSLLSFDSKLREAANDRGVISGGAPKMSCPLSSLFLASDVCFLLLASESLCNVPLNSRCFATSGIE
Homology
[Close]
BLAST of Carg00695 vs. NCBI nr
Match: ACR35255.1 (unknown [Zea mays])

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-10
Identity = 49/82 (59.76%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 38  FETLTDVLRVLGAGSPMSLLSFDSKLREAANDRGVISGGAPKMSCPLSSLFLASDVCFLL 97
           F+TLTDV   L  GS  S     S LR AAN    ISGG PKMS PLSSL LAS+ C L+
Sbjct: 87  FDTLTDVW-TLRCGSEKSTFPCSSMLR-AANGLAGISGGGPKMSLPLSSLVLASESCLLI 146

Query: 98  LASESLCNVPLNSRCFATSGIE 120
           LAS S   VPL+SRC ATSGI+
Sbjct: 147 LASAS-SRVPLSSRCLATSGID 165

[Close]
BLAST of Carg00695 vs. NCBI nr
Match: PWA44854.1 (DNA replication licensing factor MCM2 [Artemisia annua])

HSP 1 Score: 53.5 bits (127), Expect = 5.6e-04
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 82  CPLSSLFLASDVCFLLLASESLCNVPLNSRCFAT 116
           CPLSSLF ASD+CF  LAS+SL NVPL+SRC A+
Sbjct: 293 CPLSSLFFASDICFFNLASDSLPNVPLSSRCLAS 326

[Close]
BLAST of Carg00695 vs. TrEMBL
Match: tr|C4J255|C4J255_MAIZE (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.1e-11
Identity = 49/82 (59.76%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 38  FETLTDVLRVLGAGSPMSLLSFDSKLREAANDRGVISGGAPKMSCPLSSLFLASDVCFLL 97
           F+TLTDV   L  GS  S     S LR AAN    ISGG PKMS PLSSL LAS+ C L+
Sbjct: 87  FDTLTDVW-TLRCGSEKSTFPCSSMLR-AANGLAGISGGGPKMSLPLSSLVLASESCLLI 146

Query: 98  LASESLCNVPLNSRCFATSGIE 120
           LAS S   VPL+SRC ATSGI+
Sbjct: 147 LASAS-SRVPLSSRCLATSGID 165

[Close]
BLAST of Carg00695 vs. TrEMBL
Match: tr|A0A0A9CSF0|A0A0A9CSF0_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-08
Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 0 

Query: 47  VLGAGSPMSLLSFDSKLREAANDRGVISGGAPKMSCPLSSLFLASDVCFLLLASESLCNV 106
           +LG GS  S     S+L+ A    G  SGG PKMS P+ SL   S++CF +LAS SL  V
Sbjct: 2   LLGCGSAKSKFPCSSRLQAAKGLAGT-SGGGPKMSFPVISLLFDSEMCFFILASTSLSRV 61

Query: 107 PLNSRCFATSG 118
           PL+SRC ATSG
Sbjct: 62  PLSSRCLATSG 71

[Close]
BLAST of Carg00695 vs. TrEMBL
Match: tr|A0A2U1L791|A0A2U1L791_ARTAN (DNA replication licensing factor MCM2 OS=Artemisia annua OX=35608 GN=CTI12_AA522900 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.7e-04
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 82  CPLSSLFLASDVCFLLLASESLCNVPLNSRCFAT 116
           CPLSSLF ASD+CF  LAS+SL NVPL+SRC A+
Sbjct: 293 CPLSSLFFASDICFFNLASDSLPNVPLSSRCLAS 326

The following BLAST results are available for this feature:
BLAST of Carg00695 vs. NCBI nr
Match NameE-valueIdentityDescription
ACR35255.11.4e-1059.76unknown [Zea mays][more]
PWA44854.15.6e-0473.53DNA replication licensing factor MCM2 [Artemisia annua][more]
BLAST of Carg00695 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg00695 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg00695 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|C4J255|C4J255_MAIZE9.1e-1159.76Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
tr|A0A0A9CSF0|A0A0A9CSF0_ARUDO5.5e-0852.11Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
tr|A0A2U1L791|A0A2U1L791_ARTAN3.7e-0473.53DNA replication licensing factor MCM2 OS=Artemisia annua OX=35608 GN=CTI12_AA522... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00695-RACarg00695-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg00695Watermelon (97103) v2carwmbB0426
Carg00695Watermelon (97103) v2carwmbB0431
Carg00695Wax gourdcarwgoB0486
Carg00695Wax gourdcarwgoB0491
Carg00695Silver-seed gourdcarcarB064
Carg00695Silver-seed gourdcarcarB426
Carg00695Silver-seed gourdcarcarB431
Carg00695Cucumber (Gy14) v2carcgybB0418
Carg00695Cucumber (Gy14) v1carcgyB0467
Carg00695Cucurbita maxima (Rimu)carcmaB0567
Carg00695Cucurbita maxima (Rimu)carcmaB0568
Carg00695Cucurbita maxima (Rimu)carcmaB0571
Carg00695Cucurbita moschata (Rifu)carcmoB0544
Carg00695Cucurbita moschata (Rifu)carcmoB0551
Carg00695Cucurbita moschata (Rifu)carcmoB0552
Carg00695Cucurbita moschata (Rifu)carcmoB0554
Carg00695Cucurbita pepo (Zucchini)carcpeB0554
Carg00695Cucurbita pepo (Zucchini)carcpeB0555
Carg00695Cucurbita pepo (Zucchini)carcpeB0557
Carg00695Cucurbita pepo (Zucchini)carcpeB0562
Carg00695Cucurbita pepo (Zucchini)carcpeB0563
Carg00695Cucurbita pepo (Zucchini)carcpeB0571
Carg00695Wild cucumber (PI 183967)carcpiB0446
Carg00695Cucumber (Chinese Long) v2carcuB0441
Carg00695Cucumber (Chinese Long) v3carcucB0442
Carg00695Bottle gourd (USVL1VR-Ls)carlsiB364
Carg00695Bottle gourd (USVL1VR-Ls)carlsiB370
Carg00695Melon (DHL92) v3.5.1carmeB0414
Carg00695Melon (DHL92) v3.6.1carmedB0418
Carg00695Watermelon (Charleston Gray)carwcgB0397
Carg00695Watermelon (Charleston Gray)carwcgB0402
Carg00695Watermelon (97103) v1carwmB0399
Carg00695Watermelon (97103) v1carwmB0407