Carg00642 (gene) Silver-seed gourd

Overview
NameCarg00642
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionGATA transcription factor 18
LocationCucurbita_argyrosperma_scaffold_014 : 750391 .. 751156 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCAACGCTGTGGCAGCTACCAATGCTACTCCGCGGGTGAGTGTTCGTGTGGGGCGTTCTATGCGCAGCAGGGCAGCTACTTCTCCACCCCCGCCTACAACAATTACTATGAATCTGAACATTATTCTTTTGACTCTTCCTCTCCGGTGGATTGTACGCTCTCTCTCGGAACACCCTCGACTCGTATGACGGAGTACGACGAGAAGCGCCGTGAGGAGCAGCACTCTGCTTCTAATTTTGCCTGGGATTTGTCTCGTACCAAACATGGTCACTCCTCCAAGACCAGTCGCCGTAGTGGCAATACTGGCGGTGATAAATCCAGAGCCAATGGAGACCAAATGTTCTCTCGCCACTGCGCTAATTGCGACACCACCACCACCCCCCTCTGGCGCAATGGCCCTAGCGGTCCTAAGGTAAACAAACTAATCCACGATCTGGGTGTGGATCAAAATTGAACCTTTTCAAACTTTTTTGGTGTGTGAGGTAATGGATTAATTAATGTAAATTGTTTTGCAGTCGTTGTGCAATGCGTGTGGGATTAGATACAAGAAGGAAGAGAGGAAAGCGGCGAGTTCAGGGCAGCAGGCTAATTCGATGTACAAGAATGAGGCTAGCTCATGGCTTCAGCACCATTCTCACAGCCAGAAAACGCCGAGATTCCCACATGGAATTACCAATGATCTGAATCCCGGTGTCGCCTTTCTCTCATGGAGCCTCAATGACACAGAGCAGCCTCAGCTGTACTACGATTTCACAAGTTGA

mRNA sequence

ATGATGCAACGCTGTGGCAGCTACCAATGCTACTCCGCGGGTGAGTGTTCGTGTGGGGCGTTCTATGCGCAGCAGGGCAGCTACTTCTCCACCCCCGCCTACAACAATTACTATGAATCTGAACATTATTCTTTTGACTCTTCCTCTCCGGTGGATTGTACGCTCTCTCTCGGAACACCCTCGACTCGTATGACGGAGTACGACGAGAAGCGCCGTGAGGAGCAGCACTCTGCTTCTAATTTTGCCTGGGATTTGTCTCGTACCAAACATGGTCACTCCTCCAAGACCAGTCGCCGTAGTGGCAATACTGGCGGTGATAAATCCAGAGCCAATGGAGACCAAATGTTCTCTCGCCACTGCGCTAATTGCGACACCACCACCACCCCCCTCTGGCGCAATGGCCCTAGCGGTCCTAAGTCGTTGTGCAATGCGTGTGGGATTAGATACAAGAAGGAAGAGAGGAAAGCGGCGAGTTCAGGGCAGCAGGCTAATTCGATGTACAAGAATGAGGCTAGCTCATGGCTTCAGCACCATTCTCACAGCCAGAAAACGCCGAGATTCCCACATGGAATTACCAATGATCTGAATCCCGGTGTCGCCTTTCTCTCATGGAGCCTCAATGACACAGAGCAGCCTCAGCTGTACTACGATTTCACAAGTTGA

Coding sequence (CDS)

ATGATGCAACGCTGTGGCAGCTACCAATGCTACTCCGCGGGTGAGTGTTCGTGTGGGGCGTTCTATGCGCAGCAGGGCAGCTACTTCTCCACCCCCGCCTACAACAATTACTATGAATCTGAACATTATTCTTTTGACTCTTCCTCTCCGGTGGATTGTACGCTCTCTCTCGGAACACCCTCGACTCGTATGACGGAGTACGACGAGAAGCGCCGTGAGGAGCAGCACTCTGCTTCTAATTTTGCCTGGGATTTGTCTCGTACCAAACATGGTCACTCCTCCAAGACCAGTCGCCGTAGTGGCAATACTGGCGGTGATAAATCCAGAGCCAATGGAGACCAAATGTTCTCTCGCCACTGCGCTAATTGCGACACCACCACCACCCCCCTCTGGCGCAATGGCCCTAGCGGTCCTAAGTCGTTGTGCAATGCGTGTGGGATTAGATACAAGAAGGAAGAGAGGAAAGCGGCGAGTTCAGGGCAGCAGGCTAATTCGATGTACAAGAATGAGGCTAGCTCATGGCTTCAGCACCATTCTCACAGCCAGAAAACGCCGAGATTCCCACATGGAATTACCAATGATCTGAATCCCGGTGTCGCCTTTCTCTCATGGAGCCTCAATGACACAGAGCAGCCTCAGCTGTACTACGATTTCACAAGTTGA

Protein sequence

MMQRCGSYQCYSAGECSCGAFYAQQGSYFSTPAYNNYYESEHYSFDSSSPVDCTLSLGTPSTRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMFSRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHHSHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS
Homology
[Close]
BLAST of Carg00642 vs. NCBI nr
Match: XP_022949779.1 (GATA transcription factor 18-like [Cucurbita moschata] >XP_023544803.1 GATA transcription factor 18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 457.6 bits (1176), Expect = 2.4e-125
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0 

Query: 1   MMQRCGSYQCYSAGECSCGAFYAQQGSYFSTPAYNNYYESEHYSFDSSSPVDCTLSLGTP 60
           MMQRCGSYQCYSAGECSCGAFYAQQGSYFSTPAYNNYYESEHYSFDSSSPVDCTLSLGTP
Sbjct: 1   MMQRCGSYQCYSAGECSCGAFYAQQGSYFSTPAYNNYYESEHYSFDSSSPVDCTLSLGTP 60

Query: 61  STRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMFSRHC 120
           STRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMFSRHC
Sbjct: 61  STRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMFSRHC 120

Query: 121 ANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHHSH 180
           ANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHHSH
Sbjct: 121 ANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHHSH 180

Query: 181 SQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 221
           SQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS
Sbjct: 181 SQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 220

[Close]
BLAST of Carg00642 vs. NCBI nr
Match: XP_022978554.1 (GATA transcription factor 18-like [Cucurbita maxima])

HSP 1 Score: 456.1 bits (1172), Expect = 6.9e-125
Identity = 219/220 (99.55%), Postives = 219/220 (99.55%), Query Frame = 0 

Query: 1   MMQRCGSYQCYSAGECSCGAFYAQQGSYFSTPAYNNYYESEHYSFDSSSPVDCTLSLGTP 60
           MMQRCGSYQCYSAGECSCGAFY QQGSYFSTPAYNNYYESEHYSFDSSSPVDCTLSLGTP
Sbjct: 1   MMQRCGSYQCYSAGECSCGAFYGQQGSYFSTPAYNNYYESEHYSFDSSSPVDCTLSLGTP 60

Query: 61  STRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMFSRHC 120
           STRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMFSRHC
Sbjct: 61  STRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMFSRHC 120

Query: 121 ANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHHSH 180
           ANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHHSH
Sbjct: 121 ANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHHSH 180

Query: 181 SQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 221
           SQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS
Sbjct: 181 SQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 220

[Close]
BLAST of Carg00642 vs. NCBI nr
Match: XP_008440715.1 (PREDICTED: GATA transcription factor 18 [Cucumis melo])

HSP 1 Score: 404.8 bits (1039), Expect = 1.8e-109
Identity = 195/222 (87.84%), Postives = 206/222 (92.79%), Query Frame = 0 

Query: 1   MMQRCGSYQCYSAGECSCGAFYAQQGSYFSTPAYNNYYESEHYSFDSSSPVDCTLSLGTP 60
           MMQRCGSYQCYSAGECSC  +Y QQG+YFS P YNNYYE+EHYSF+SSSPVDCTLSLGTP
Sbjct: 1   MMQRCGSYQCYSAGECSCNGYYGQQGTYFSLPTYNNYYETEHYSFESSSPVDCTLSLGTP 60

Query: 61  STRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRR-SGNTGGDKSRA-NGDQMFSR 120
           STRMTEYDEKRREEQHSASNF WDL RTKH HSSKT+RR S N+G DKS A NGDQMF+R
Sbjct: 61  STRMTEYDEKRREEQHSASNFTWDLPRTKHPHSSKTTRRSSANSGSDKSNANNGDQMFAR 120

Query: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHH 180
           HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMY+NEASSWLQHH
Sbjct: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYRNEASSWLQHH 180

Query: 181 SHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 221
           SHSQ+TPRF HGI N+LNP VAFL+WSLNDTEQPQLYYDFTS
Sbjct: 181 SHSQRTPRFSHGIANELNPSVAFLTWSLNDTEQPQLYYDFTS 222

[Close]
BLAST of Carg00642 vs. NCBI nr
Match: XP_004143515.1 (PREDICTED: GATA transcription factor 18-like [Cucumis sativus] >KGN48832.1 hypothetical protein Csa_6G502700 [Cucumis sativus])

HSP 1 Score: 383.6 bits (984), Expect = 4.4e-103
Identity = 189/222 (85.14%), Postives = 197/222 (88.74%), Query Frame = 0 

Query: 1   MMQRCGSYQCYSAGECSCGAFYAQQGSYFSTPAYNNYYESEHYSFDSSSPVDCTLSLGTP 60
           MMQRCGSYQCYSAGECSC  FY QQG+YFS P+YNNYYE+EHYSF+SSSPVDCTLSLGTP
Sbjct: 1   MMQRCGSYQCYSAGECSCNGFYGQQGTYFSMPSYNNYYETEHYSFESSSPVDCTLSLGTP 60

Query: 61  STRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRR-SGNTGGDKSRA-NGDQMFSR 120
           STRMTEYDEKRREEQHSASNF WDL RTKH HSSKT+RR S N G DKS A NGDQMF+R
Sbjct: 61  STRMTEYDEKRREEQHSASNFTWDLPRTKHPHSSKTTRRSSANIGSDKSNANNGDQMFAR 120

Query: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHH 180
           HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQ        ASSWLQHH
Sbjct: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQ--------ASSWLQHH 180

Query: 181 SHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 221
           SHSQK PRF HGI N+LNP VAFL+WSLNDTEQPQLYYDFTS
Sbjct: 181 SHSQKAPRFSHGIANELNPSVAFLTWSLNDTEQPQLYYDFTS 214

[Close]
BLAST of Carg00642 vs. NCBI nr
Match: XP_022962877.1 (GATA transcription factor 18-like [Cucurbita moschata])

HSP 1 Score: 380.2 bits (975), Expect = 4.8e-102
Identity = 188/222 (84.68%), Postives = 200/222 (90.09%), Query Frame = 0 

Query: 1   MMQRCGSYQCYSAGECSC-GAFYAQQGSYFSTPAYNNYYESEHYSFDSSSP-VDCTLSLG 60
           MMQRCGSYQCYSAGECSC  AFY QQ ++FS PAYNNYYES+HYSF SSSP VDCTLSLG
Sbjct: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG 60

Query: 61  TPSTRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMFSR 120
           TPSTRMTE+DEKRREEQ SASNFAWDLSRTKH  SSK+ RR    GGDKS +N DQMF+R
Sbjct: 61  TPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRR----GGDKSSSNADQMFAR 120

Query: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHH 180
           HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQA+SMY+NE SSWLQHH
Sbjct: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHH 180

Query: 181 SHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 221
           SH+Q+TPRF HGI ND+NP VA LSWSLNDTEQPQLYYDFTS
Sbjct: 181 SHTQRTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 218

[Close]
BLAST of Carg00642 vs. TAIR10
Match: AT2G18380.1 (GATA transcription factor 20)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-20
Identity = 58/117 (49.57%), Postives = 74/117 (63.25%), Query Frame = 0 

Query: 35  NNYYESEHYSFDSSSPVDCTLSLGTPSTRMTEYDEKRREEQHSASNFAWDLSRTKHGHSS 94
           N++    + +F SS+ VDCTLSLGTPSTR+   D+  R    +++N + D     HG ++
Sbjct: 22  NHHNYDPYNNFSSSTSVDCTLSLGTPSTRL---DDHHRFSSANSNNISGDF--YIHGGNA 81

Query: 95  KTSRRSGNTGGDKSRANGDQMFSRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKK 152
           KTS  S   GG            R CA+CDTT+TPLWRNGP GPKSLCNACGIR+KK
Sbjct: 82  KTS--SYKKGGVA------HSLPRRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKK 125

[Close]
BLAST of Carg00642 vs. TAIR10
Match: AT4G36620.1 (GATA transcription factor 19)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-20
Identity = 53/120 (44.17%), Postives = 65/120 (54.17%), Query Frame = 0 

Query: 34  YNNYYESEHYSFDSSSP---VDCTLSLGTPSTRMTEYDEKRREEQHSASNFAWDLSRTKH 93
           ++ ++  E+     SSP   VDCTLSLGTPSTR+   D++RR   H++    WD      
Sbjct: 3   FSMFFSPENDVSHHSSPYASVDCTLSLGTPSTRLCNEDDERRFSSHTSDTIGWDFL---- 62

Query: 94  GHSSKTSRRSGNTGGDKSRANGDQMFSRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYK 151
                      N               R CANCDTT+TPLWRNGP GPKSLCNACGIR+K
Sbjct: 63  -----------NGSXXXXXXXXXXXXXRRCANCDTTSTPLWRNGPRGPKSLCNACGIRFK 107

[Close]
BLAST of Carg00642 vs. TAIR10
Match: AT3G50870.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 84.3 bits (207), Expect = 9.9e-17
Identity = 55/123 (44.72%), Postives = 63/123 (51.22%), Query Frame = 0 

Query: 47  SSSPVDCTLSLGTPSTRMTE-----YDEKRREEQHSASNFAWDLSRTKHGHSSKTSRRSG 106
           SSS VDCTLSLGTPSTR+ E                 SNF WDL  TK+ +S      + 
Sbjct: 63  SSSLVDCTLSLGTPSTRLCEXXXXXXXXXXXXXXXCISNF-WDLIHTKNNNSKTAPYNNV 122

Query: 107 NTGGDKSRANG--------------DQMFSRHCANCDTTTTPLWRNGPSGPKSLCNACGI 151
            +      + G                     CANCDTT+TPLWRNGP GPKSLCNACGI
Sbjct: 123 PSFSANKPSRGCXXXXXXXXXXXXXXXXXXXXCANCDTTSTPLWRNGPRGPKSLCNACGI 182

[Close]
BLAST of Carg00642 vs. TAIR10
Match: AT4G26150.1 (cytokinin-responsive gata factor 1)

HSP 1 Score: 64.7 bits (156), Expect = 8.2e-11
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 118 RHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKA 157
           R C++C+TT TPLWR+GP GPKSLCNACGIR +K  R A
Sbjct: 199 RICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAA 237

[Close]
BLAST of Carg00642 vs. TAIR10
Match: AT5G26930.1 (GATA transcription factor 23)

HSP 1 Score: 64.7 bits (156), Expect = 8.2e-11
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 118 RHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEER 155
           R C+ C TT TP+WR GP+GPKSLCNACGIR++K+ R
Sbjct: 26  RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRR 62

[Close]
BLAST of Carg00642 vs. Swiss-Prot
Match: sp|Q9ZPX0|GAT20_ARATH (GATA transcription factor 20 OS=Arabidopsis thaliana OX=3702 GN=GATA20 PE=2 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 2.0e-19
Identity = 58/117 (49.57%), Postives = 74/117 (63.25%), Query Frame = 0 

Query: 35  NNYYESEHYSFDSSSPVDCTLSLGTPSTRMTEYDEKRREEQHSASNFAWDLSRTKHGHSS 94
           N++    + +F SS+ VDCTLSLGTPSTR+   D+  R    +++N + D     HG ++
Sbjct: 22  NHHNYDPYNNFSSSTSVDCTLSLGTPSTRL---DDHHRFSSANSNNISGDF--YIHGGNA 81

Query: 95  KTSRRSGNTGGDKSRANGDQMFSRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKK 152
           KTS  S   GG            R CA+CDTT+TPLWRNGP GPKSLCNACGIR+KK
Sbjct: 82  KTS--SYKKGGVA------HSLPRRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKK 125

[Close]
BLAST of Carg00642 vs. Swiss-Prot
Match: sp|Q6QPM2|GAT19_ARATH (GATA transcription factor 19 OS=Arabidopsis thaliana OX=3702 GN=GATA19 PE=1 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-19
Identity = 53/120 (44.17%), Postives = 65/120 (54.17%), Query Frame = 0 

Query: 34  YNNYYESEHYSFDSSSP---VDCTLSLGTPSTRMTEYDEKRREEQHSASNFAWDLSRTKH 93
           ++ ++  E+     SSP   VDCTLSLGTPSTR+   D++RR   H++    WD      
Sbjct: 3   FSMFFSPENDVSHHSSPYASVDCTLSLGTPSTRLCNEDDERRFSSHTSDTIGWDFL---- 62

Query: 94  GHSSKTSRRSGNTGGDKSRANGDQMFSRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYK 151
                      N               R CANCDTT+TPLWRNGP GPKSLCNACGIR+K
Sbjct: 63  -----------NGSXXXXXXXXXXXXXRRCANCDTTSTPLWRNGPRGPKSLCNACGIRFK 107

[Close]
BLAST of Carg00642 vs. Swiss-Prot
Match: sp|Q8LC79|GAT18_ARATH (GATA transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=GATA18 PE=1 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-15
Identity = 55/123 (44.72%), Postives = 63/123 (51.22%), Query Frame = 0 

Query: 47  SSSPVDCTLSLGTPSTRMTE-----YDEKRREEQHSASNFAWDLSRTKHGHSSKTSRRSG 106
           SSS VDCTLSLGTPSTR+ E                 SNF WDL  TK+ +S      + 
Sbjct: 63  SSSLVDCTLSLGTPSTRLCEXXXXXXXXXXXXXXXCISNF-WDLIHTKNNNSKTAPYNNV 122

Query: 107 NTGGDKSRANG--------------DQMFSRHCANCDTTTTPLWRNGPSGPKSLCNACGI 151
            +      + G                     CANCDTT+TPLWRNGP GPKSLCNACGI
Sbjct: 123 PSFSANKPSRGCXXXXXXXXXXXXXXXXXXXXCANCDTTSTPLWRNGPRGPKSLCNACGI 182

[Close]
BLAST of Carg00642 vs. Swiss-Prot
Match: sp|B8AX51|GAT15_ORYSI (GATA transcription factor 15 OS=Oryza sativa subsp. indica OX=39946 GN=GATA15 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.2e-15
Identity = 48/112 (42.86%), Postives = 60/112 (53.57%), Query Frame = 0 

Query: 51  VDCTLSLGTPSTRMTEYDEKRREEQH------------SASNFAWDLSRTKHGHSSKTSR 110
           VDCTLSLGTPS+R  E         +            SA+  +WD +   + +  +  R
Sbjct: 74  VDCTLSLGTPSSRRAEPVAAAAPAANHGAPVPAHYPSLSAATVSWDATAESY-YCGQQGR 133

Query: 111 RSGNTGGDKSRANGDQMFSRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYK 151
            +       + A  D +  R CANC T +TPLWRNGP GPKSLCNACGIRYK
Sbjct: 134 PATGAAKCAAGAGHDALLDRRCANCGTASTPLWRNGPRGPKSLCNACGIRYK 184

[Close]
BLAST of Carg00642 vs. Swiss-Prot
Match: sp|Q6L5E5|GAT15_ORYSJ (GATA transcription factor 15 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA15 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.2e-15
Identity = 48/112 (42.86%), Postives = 60/112 (53.57%), Query Frame = 0 

Query: 51  VDCTLSLGTPSTRMTEYDEKRREEQH------------SASNFAWDLSRTKHGHSSKTSR 110
           VDCTLSLGTPS+R  E         +            SA+  +WD +   + +  +  R
Sbjct: 74  VDCTLSLGTPSSRRAEPVAAAAPAANHGAPVPAHYPSLSAATVSWDATAESY-YCGQQGR 133

Query: 111 RSGNTGGDKSRANGDQMFSRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYK 151
            +       + A  D +  R CANC T +TPLWRNGP GPKSLCNACGIRYK
Sbjct: 134 PATGAAKCAAGAGHDALLDRRCANCGTASTPLWRNGPRGPKSLCNACGIRYK 184

[Close]
BLAST of Carg00642 vs. TrEMBL
Match: tr|A0A1S3B2I6|A0A1S3B2I6_CUCME (GATA transcription factor 18 OS=Cucumis melo OX=3656 GN=LOC103485050 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 1.2e-109
Identity = 195/222 (87.84%), Postives = 206/222 (92.79%), Query Frame = 0 

Query: 1   MMQRCGSYQCYSAGECSCGAFYAQQGSYFSTPAYNNYYESEHYSFDSSSPVDCTLSLGTP 60
           MMQRCGSYQCYSAGECSC  +Y QQG+YFS P YNNYYE+EHYSF+SSSPVDCTLSLGTP
Sbjct: 1   MMQRCGSYQCYSAGECSCNGYYGQQGTYFSLPTYNNYYETEHYSFESSSPVDCTLSLGTP 60

Query: 61  STRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRR-SGNTGGDKSRA-NGDQMFSR 120
           STRMTEYDEKRREEQHSASNF WDL RTKH HSSKT+RR S N+G DKS A NGDQMF+R
Sbjct: 61  STRMTEYDEKRREEQHSASNFTWDLPRTKHPHSSKTTRRSSANSGSDKSNANNGDQMFAR 120

Query: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHH 180
           HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMY+NEASSWLQHH
Sbjct: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYRNEASSWLQHH 180

Query: 181 SHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 221
           SHSQ+TPRF HGI N+LNP VAFL+WSLNDTEQPQLYYDFTS
Sbjct: 181 SHSQRTPRFSHGIANELNPSVAFLTWSLNDTEQPQLYYDFTS 222

[Close]
BLAST of Carg00642 vs. TrEMBL
Match: tr|A0A0A0KKD2|A0A0A0KKD2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502700 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 2.9e-103
Identity = 189/222 (85.14%), Postives = 197/222 (88.74%), Query Frame = 0 

Query: 1   MMQRCGSYQCYSAGECSCGAFYAQQGSYFSTPAYNNYYESEHYSFDSSSPVDCTLSLGTP 60
           MMQRCGSYQCYSAGECSC  FY QQG+YFS P+YNNYYE+EHYSF+SSSPVDCTLSLGTP
Sbjct: 1   MMQRCGSYQCYSAGECSCNGFYGQQGTYFSMPSYNNYYETEHYSFESSSPVDCTLSLGTP 60

Query: 61  STRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRR-SGNTGGDKSRA-NGDQMFSR 120
           STRMTEYDEKRREEQHSASNF WDL RTKH HSSKT+RR S N G DKS A NGDQMF+R
Sbjct: 61  STRMTEYDEKRREEQHSASNFTWDLPRTKHPHSSKTTRRSSANIGSDKSNANNGDQMFAR 120

Query: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHH 180
           HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQ        ASSWLQHH
Sbjct: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQ--------ASSWLQHH 180

Query: 181 SHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 221
           SHSQK PRF HGI N+LNP VAFL+WSLNDTEQPQLYYDFTS
Sbjct: 181 SHSQKAPRFSHGIANELNPSVAFLTWSLNDTEQPQLYYDFTS 214

[Close]
BLAST of Carg00642 vs. TrEMBL
Match: tr|A0A2I4G7Z6|A0A2I4G7Z6_9ROSI (GATA transcription factor 18-like OS=Juglans regia OX=51240 GN=LOC109005511 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.7e-42
Identity = 118/250 (47.20%), Postives = 147/250 (58.80%), Query Frame = 0 

Query: 1   MMQRCGSYQCYSAGECSCGAFYAQQGSY---FSTPAYNNYYESEHYSFDSSS-PVDCTLS 60
           MM RC   Q    G CSCG F++Q  S+   FS P +     SE YSF SSS  VDCTLS
Sbjct: 1   MMHRCSDAQGNMVGPCSCGLFHSQSNSFSMLFSMPDHIPDENSEMYSFTSSSASVDCTLS 60

Query: 61  LGTPSTRMTEYDEKRREEQHSASNFA-WDLSRTKHGHSS-----KTSRRSGNTGGDKSRA 120
           LGTPSTR+TE +EKRR    S S ++ WD+ + KH  SS     KTSR  G +    S +
Sbjct: 61  LGTPSTRLTEDEEKRRRSGSSVSKYSCWDVLQNKHSPSSAPQTYKTSR--GGSNASSSNS 120

Query: 121 NGDQMFSRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSG---------Q 180
             D + +R CANCDTT+TPLWRNGP GPKSLCNACGIR+KKEER+A ++           
Sbjct: 121 VNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAAATSNGGSPGLM 180

Query: 181 QANSMYKNEASSWLQHHSHSQKTPRF-PHGITN----------DLNPGVAFLSWSLNDTE 220
           + N +  +  +SW   HS +QK P F P  I N          D + G+ FLSW LN T+
Sbjct: 181 EPNHILGHHNNSWYA-HSQTQKMPCFAPAAIGNEFPFIEDNDRDSDTGIPFLSWHLNVTD 240

[Close]
BLAST of Carg00642 vs. TrEMBL
Match: tr|A5C2I6|A5C2I6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_009032 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.7e-40
Identity = 110/249 (44.18%), Postives = 138/249 (55.42%), Query Frame = 0 

Query: 2   MQRCGSYQCYSAGECSCGAFYAQQGSY---FSTPAYNNYYESEHYSF--DSSSPVDCTLS 61
           M RC S Q   AG C+CG F+ Q  S+   FS P +  + E++ Y F   SSS VDCTLS
Sbjct: 76  MHRCSSSQGNMAGPCTCGLFHNQSNSFSMLFSMPNHKPFDETDMYPFTSSSSSSVDCTLS 135

Query: 62  LGTPSTRMTEYDEKRREEQHSA----SNFAWDLSRTKHGHSSKTSR--RSGNTGGDKSRA 121
           LGTPSTR+T+ DEKR      A    SNF WD+ + KH  S+ T +  R G         
Sbjct: 136 LGTPSTRLTDNDEKRMHHDRRAGSCVSNFCWDILQXKHTPSAPTHKPSRGGXXXXXXXXX 195

Query: 122 NGDQMFSRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKK----------EERKAASSG 181
            GD + +R CANCDTT+TPLWRNGP GPKSLCNACGIR+KK               A   
Sbjct: 196 AGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKXXXXXXXXXXXXXXXAGVM 255

Query: 182 QQANSMYKNEASSWLQHHSHSQKTP----------RFPHGITNDLNPGVAFLSWSLNDTE 220
           +  + M  +  +SW+ HHS +QK P          RF      D + G+ FLSW LN T+
Sbjct: 256 EPQHIMISHHNNSWV-HHSQTQKMPCLSPAMGNEFRFIEDDDRDSDTGIPFLSWRLNVTD 315

[Close]
BLAST of Carg00642 vs. TrEMBL
Match: tr|U5GFE7|U5GFE7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G122700v3 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.0e-39
Identity = 113/252 (44.84%), Postives = 150/252 (59.52%), Query Frame = 0 

Query: 1   MMQRCGSYQCYSAGECSCGAFYAQQGSY---FSTPAYN-NYYESEHYSF-DSSSPVDCTL 60
           MM RC S QC   G CSCG +++Q  S+   FS P ++ ++ E++ Y F   SS VDCTL
Sbjct: 1   MMHRCSSSQCNMVGSCSCGMYHSQSNSFSMLFSMPDHHKSFDETDMYPFTPPSSSVDCTL 60

Query: 61  SLGTPSTRMTEYDEKR-REEQHSA----SNFAWDLSRTKHG------HSSKTSRRSGNTG 120
           SLGTPSTR++E DEKR R +Q  +    SN+ WD+ +TK+        + KTSR +    
Sbjct: 61  SLGTPSTRLSEDDEKRTRHDQRRSGSCMSNYCWDILQTKNDSTPYPPQAHKTSRGNNTCH 120

Query: 121 GDKSR-ANGDQMFSRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAAS----- 180
           G  S  AN D + +R CANCDTT+TPLWRNGP GPKSLCNACGIR+KKEER+A +     
Sbjct: 121 GSNSNFANNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAANXXX 180

Query: 181 -----SGQQANSMYKNEASSWLQHHSHSQKTP----RFPHGITNDLNPG-VAFLSWSLND 220
                SG        ++ +SW+Q+      +P     F      D + G + FLSW LN 
Sbjct: 181 XXXXXSGGMEQHYGYHQNNSWVQNQKMPCFSPANEFSFIEDNDRDSDTGNIPFLSWRLNV 240

The following BLAST results are available for this feature:
BLAST of Carg00642 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949779.12.4e-125100.00GATA transcription factor 18-like [Cucurbita moschata] >XP_023544803.1 GATA tran... [more]
XP_022978554.16.9e-12599.55GATA transcription factor 18-like [Cucurbita maxima][more]
XP_008440715.11.8e-10987.84PREDICTED: GATA transcription factor 18 [Cucumis melo][more]
XP_004143515.14.4e-10385.14PREDICTED: GATA transcription factor 18-like [Cucumis sativus] >KGN48832.1 hypot... [more]
XP_022962877.14.8e-10284.68GATA transcription factor 18-like [Cucurbita moschata][more]
BLAST of Carg00642 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G18380.11.1e-2049.57GATA transcription factor 20[more]
AT4G36620.11.5e-2044.17GATA transcription factor 19[more]
AT3G50870.19.9e-1744.72GATA type zinc finger transcription factor family protein[more]
AT4G26150.18.2e-1169.23cytokinin-responsive gata factor 1[more]
AT5G26930.18.2e-1167.57GATA transcription factor 23[more]
BLAST of Carg00642 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ZPX0|GAT20_ARATH2.0e-1949.57GATA transcription factor 20 OS=Arabidopsis thaliana OX=3702 GN=GATA20 PE=2 SV=2[more]
sp|Q6QPM2|GAT19_ARATH2.7e-1944.17GATA transcription factor 19 OS=Arabidopsis thaliana OX=3702 GN=GATA19 PE=1 SV=2[more]
sp|Q8LC79|GAT18_ARATH1.8e-1544.72GATA transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=GATA18 PE=1 SV=2[more]
sp|B8AX51|GAT15_ORYSI5.2e-1542.86GATA transcription factor 15 OS=Oryza sativa subsp. indica OX=39946 GN=GATA15 PE... [more]
sp|Q6L5E5|GAT15_ORYSJ5.2e-1542.86GATA transcription factor 15 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA15 ... [more]
BLAST of Carg00642 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B2I6|A0A1S3B2I6_CUCME1.2e-10987.84GATA transcription factor 18 OS=Cucumis melo OX=3656 GN=LOC103485050 PE=4 SV=1[more]
tr|A0A0A0KKD2|A0A0A0KKD2_CUCSA2.9e-10385.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502700 PE=4 SV=1[more]
tr|A0A2I4G7Z6|A0A2I4G7Z6_9ROSI3.7e-4247.20GATA transcription factor 18-like OS=Juglans regia OX=51240 GN=LOC109005511 PE=4... [more]
tr|A5C2I6|A5C2I6_VITVI2.7e-4044.18Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_009032 PE=4 SV=1[more]
tr|U5GFE7|U5GFE7_POPTR5.0e-3944.84Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G122700v3 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR039355Transcription_factor_GATA
IPR013088Znf_NHR/GATA
IPR000679Znf_GATA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00642-RACarg00642-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000679Zinc finger, GATA-typeSMARTSM00401GATA_3coord: 114..171
e-value: 1.7E-18
score: 77.4
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 120..154
e-value: 2.7E-18
score: 65.2
IPR000679Zinc finger, GATA-typePROSITEPS00344GATA_ZN_FINGER_1coord: 120..145
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 114..150
score: 14.233
IPR000679Zinc finger, GATA-typeCDDcd00202ZnF_GATAcoord: 120..151
e-value: 7.30196E-14
score: 62.3902
IPR013088Zinc finger, NHR/GATA-typeGENE3DG3DSA:3.30.50.10coord: 109..173
e-value: 2.0E-15
score: 58.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..114
NoneNo IPR availablePANTHERPTHR10071:SF305SUBFAMILY NOT NAMEDcoord: 2..190
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 116..155
IPR039355Transcription factor GATAPANTHERPTHR10071TRANSCRIPTION FACTOR GATA GATA BINDING FACTORcoord: 2..190

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00642Cla014213Watermelon (97103) v1carwmB0407
Carg00642Csa6G502700Cucumber (Chinese Long) v2carcuB0441
Carg00642MELO3C007831Melon (DHL92) v3.5.1carmeB0414
Carg00642ClCG01G019610Watermelon (Charleston Gray)carwcgB0397
Carg00642CSPI06G31020Wild cucumber (PI 183967)carcpiB0446
Carg00642CmaCh07G004870Cucurbita maxima (Rimu)carcmaB0571
Carg00642CmoCh03G007750Cucurbita moschata (Rifu)carcmoB0551
Carg00642CmoCh07G004850Cucurbita moschata (Rifu)carcmoB0554
Carg00642Lsi01G006730Bottle gourd (USVL1VR-Ls)carlsiB364
Carg00642Cp4.1LG10g00610Cucurbita pepo (Zucchini)carcpeB0554
Carg00642Cp4.1LG19g09270Cucurbita pepo (Zucchini)carcpeB0563
Carg00642CsGy6G030550Cucumber (Gy14) v2carcgybB0418
Carg00642MELO3C007831.2Melon (DHL92) v3.6.1carmedB0418
Carg00642CsaV3_6G046280Cucumber (Chinese Long) v3carcucB0442
Carg00642Cla97C01G018990Watermelon (97103) v2carwmbB0426
Carg00642Bhi03G001005Wax gourdcarwgoB0491
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg00642Carg16048Silver-seed gourdcarcarB426
The following block(s) are covering this gene:
GeneOrganismBlock
Carg00642Wax gourdcarwgoB0485
Carg00642Silver-seed gourdcarcarB429
Carg00642Silver-seed gourdcarcarB430
Carg00642Silver-seed gourdcarcarB432
Carg00642Cucumber (Gy14) v2carcgybB0412
Carg00642Cucumber (Gy14) v2carcgybB0415
Carg00642Cucumber (Gy14) v2carcgybB0416
Carg00642Cucumber (Gy14) v1carcgyB0468
Carg00642Cucumber (Gy14) v1carcgyB0473
Carg00642Cucurbita maxima (Rimu)carcmaB0561
Carg00642Cucurbita maxima (Rimu)carcmaB0567
Carg00642Cucurbita moschata (Rifu)carcmoB0543
Carg00642Cucurbita moschata (Rifu)carcmoB0546
Carg00642Cucurbita pepo (Zucchini)carcpeB0558
Carg00642Cucurbita pepo (Zucchini)carcpeB0566
Carg00642Cucurbita pepo (Zucchini)carcpeB0572
Carg00642Wild cucumber (PI 183967)carcpiB0439
Carg00642Wild cucumber (PI 183967)carcpiB0443
Carg00642Wild cucumber (PI 183967)carcpiB0444
Carg00642Cucumber (Chinese Long) v2carcuB0434
Carg00642Cucumber (Chinese Long) v2carcuB0438
Carg00642Cucumber (Chinese Long) v2carcuB0439
Carg00642Cucumber (Chinese Long) v3carcucB0436
Carg00642Cucumber (Chinese Long) v3carcucB0439
Carg00642Cucumber (Chinese Long) v3carcucB0440
Carg00642Bottle gourd (USVL1VR-Ls)carlsiB367
Carg00642Bottle gourd (USVL1VR-Ls)carlsiB369
Carg00642Bottle gourd (USVL1VR-Ls)carlsiB371
Carg00642Melon (DHL92) v3.5.1carmeB0404
Carg00642Melon (DHL92) v3.5.1carmeB0409
Carg00642Melon (DHL92) v3.5.1carmeB0412
Carg00642Melon (DHL92) v3.6.1carmedB0408
Carg00642Melon (DHL92) v3.6.1carmedB0416
Carg00642Watermelon (Charleston Gray)carwcgB0398
Carg00642Watermelon (Charleston Gray)carwcgB0400
Carg00642Watermelon (Charleston Gray)carwcgB0401
Carg00642Watermelon (97103) v1carwmB0402
Carg00642Watermelon (97103) v1carwmB0403
Carg00642Watermelon (97103) v2carwmbB0428
Carg00642Watermelon (97103) v2carwmbB0430
Carg00642Watermelon (97103) v2carwmbB0432