Carg00486 (gene) Silver-seed gourd

Overview
NameCarg00486
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUbiquitin-specific protease family C19-related protein
LocationCucurbita_argyrosperma_scaffold_014 : 1963 .. 4961 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTCTAGAATTCCATCTCACCAGCTCAGTGGCGGTCTCTATGTCTCCGGCCGCCCTGAGCAGCTCAAGGAGCGGCCCCCTACAATGGGCTCACGCGCTGTCCCTTACACCGGTGGAGACGTCAAGAAATCAGGGGAGCTTGGTAAAATGTTTGACCTCCATCTCGTCGATTCCCAACTTCCGGCCATCCTCCTTTCTAAATCCTCTCGTCCTTCGTCCTCTTCTCAGCACAACAGTGGATCGGTCGATCCGGCCCTAATTCCGACCTGTCACTAAGCACTCTAATTCCGTCCGATCTCCAAGAAACTCATCCGGCCCGATTTCCCTCCCGCCAAACTGGTCTCATAACCTCCGGCCCTTTGGATCCGTCCTCTTGGATCGTCCAGTAGCGGCGGCGGGCGGCGAGAGGACGGCGCTCCGGCCCTCTGGAGCAGACGACGTCTTAGGTAAGACGATGTACCGGGCGGCAGGTCACGAGCTTAGCGAGGATGTCAAATTTAGGTTCAAGGTTTCGAAGGTAGTGTGTGGGCTTTTCTTGTGGTTTTTTCAGTCACGTTTCGTTGCGTTTTGGCGCGTTTCTGATGGTGCGGTGAAGAAAGCCGATTATGATTGGTGCGCCGCGGGGGGGCTTTTTGTTCGCGGCAGTGATTGCGATTCTTTGAACATCGCTTTGGGGAAAAGGGGGGTTTGATAGGGTTTGTGAGAAGGTACCCGGACGCTGATCAGAGGCGCTATTGATGGACAGTACGTGAGGTCACAGGGGTAATTTTGCTCTCTCTCTCTCTCTGTCTCGCTCGCTTTCATGATTATTTTAATTGGAGTTTTTAATTAAAAGTATGAGACCATCAATTGATTTAACTATCCTACGTCTTATGCCTAATCATAGGAGCATTTTGTATCCTAATCAATTTATATATTGCGCAATAGGATTGAATTAGTCATACGATGATGCTGACTGTTTGACAATATTATAAGATGATTAATAAAACAAAAATTATTATTATCTTTGACGAGGAATCCCAAATTTGGCCTCTTTATTAGATCTCTGGAAATCTGTATTTGTTTTTTTTTTATAACTCCATCATTGTTCTTCTCAGTTCTTCCTCAGATAAACTTGTATTCTTGAAGGTTGAAGAACGGGTAGCTTATCTCAAATACTTGAGACAAAACTTGATAATTTGTAGAATTTCTGCAAGTAACGAAAAGCTTGAAATTTAGCTGACTGACTTAACCCTTCTTTGAATTTGTCTTGGCAAACTAGCTTATACCACTGCTACCCAATAGGCAAAATATTTGTACTAATTTTCAAGGATTAGTTTAAAATAGTGCGTTCTTAGTTCCATAATCTTGTTGTTTGTCACCATCTTGATACTTTGACGGCAAAATTATTGGGACTTATTGATGAAAATGGTAATGGAAAAGTCACTTCAAATCATTCACAGATGTTTTGAAATTCAGTATAGATCAGTAGATAAGCTTCAGGCATTCATTTACATGCTCTTATGAACCTGCAACTTCATCTTCTTTAGAACTTAATATCTTCTTTAGAACTTTTGTGCTACTTATAGAATGGCCTGTTATAGTAAGGTAGAATATAGAGAGTTCTTTATGTAAATATCATACATAGTAGGTGCGTTCCTTGCTTCTCTCCCTTGTCGTGTTGCTACCACCATTGGAAGACAGTACCAATCCTCTGGCTCTCATGATCGATCAAATTTACTTTTTTAGTCATTTGCATTTGGAGTTATAATTAGACCTATGAAAAGGCTGAAAATCCTTCTTAGATATTGTATAACAGTTTGTCGTGTTTGACCTTCACAATGGAAGGAAATATCATTGATGGATTGTGGTTTTTTTTGTCCACAAATGTTCTCAATTGTGTTTCTCTTCTCTCTACCAATGGGAAATTTGCGATTGTCATTCATATCTATTCACTCGTCCACTTTTGTATTACCGTCTTCTTTTTTTCTTCAGATTATTGAGTTAACAGTATTATATGCAATTCCTTCTCTTTTAGGTCGTCACGTGCTTCGGCCAGTTATTCCTCTCGAGTCGTTTCCTACCAGAGAGTACCGAGGTGCGTTTACGTGTCGTACCTGAACCTAGTATGAATATAAAGGATGGTATTTTTTTTTAAGGGTGGAAAGCCTGCAATCCTAAACACCGCTGCTTTTCTTGGGGATCTAGCGGTTCTGAGGCGTCATTTCTCTTCCTACATTTTGTTCTAAATCTACTTGGAGTGGTGGAACGAAGCATTCCTTATAAGGTCGTGGAAACCTCTCCCTAGTAGATGCATATTAAAACCTTGAGAGGAAGTCCAAAAGGAAAACTCAAAGAGGATAAATATCTCCAGGTGACCCTTGACTGTTACGCAACTTGATGCTATGATTCATCTTTTGTTTAAGTGCAAATGCTTCTGAACAGACGAAACTACATAGACTTAGATACCATGTTATGATGTGTATGAGTTTTGGAATTGCATACATAGACGGTATTCATACGGTCAATGCATACACATATTCTTGTTTGATTATATGATGAGTATGTAAATGGGTTCGCCTTTTTGCACATTCCATACAGAGATATGTAGCTGACTTTTACATTATCAGCTTTCAAAGCTGGTTTAGAGCATATGGTGAAAGCAGGCTGCTATGGGCCAAGGTGCTTTCCATTTGTCAAACCCTCCACCGGTTGTCGATGTTCTACGAATGAAAAACCGAGACTTGTCTCAAGCTTCCTAGCTGGCATAGTTCCGATCGCAACTCTCAAGCGTTACGACCGATGTAACGCCTTCTAAAGAAGGTACTACACCATCACTTGTTTTTTCCAAATTCCCCATGCCTATTTTCTGTGCGATATCGAATTCTATCTTTACACAAACATGATCTAGCATGCTACTCCTCACTCAAACCTTATTACTTCTTCTTCATCATTTCAGGTACGTCAAGAAGGGCAGCACCGTGAGTCGTCATGAGGGCGTTCAGCGCCAGAGATAA

mRNA sequence

ATGGGCTCTAGAATTCCATCTCACCAGCTCAGTGGCGGTCTCTATGTCTCCGGCCGCCCTGAGCAGCTCAAGGAGCGGCCCCCTACAATGGGCTCACGCGCTGTCCCTTACACCGGTGGAGACGTCAAGAAATCAGGGGAGCTTGGTAAAATGTTTGACCTCCATCTCGTCGATTCCCAACTTCCGGCCATCCTCCTTTCTAAATCCTCTCGTCCTTCGTCCTCTTCTCAGCACAACAGTGGATCGCACTCTAATTCCGTCCGATCTCCAAGAAACTCATCCGGCCCGATTTCCCTCCCGCCAAACTGGTCTCATAACCTCCGGCCCTTTGGATCCGTCCTCTTGGATCGTCCAGTAGCGGCGGCGGGCGGCGAGAGGACGGCGCTCCGGCCCTCTGGAGCAGACGACGTCTTAGGTAAGACGATGTACCGGGCGGCAGGTCACGAGCTTAGCGAGGATGTCAAATTTAGGTTCAAGGTTTCGAAGGTAGTGTGTGGGCTTTTCTTGTGGTTTTTTCAGTCACGTTTCGTTGCGTTTTGGCGCGTTTCTGATGGTGCGGTGAAGAAAGCCGATTATGATTGGTGCGCCGCGGGGGGGCTTTTTGTTCGCGGCAGTGATTGCGATTCTTTGAACATCGCTTTGGGGAAAAGGGGGATTATTGAGTTAACAGTATTATATGCAATTCCTTCTCTTTTAGGTCGTCACGTGCTTCGGCCAGTTATTCCTCTCGAGTCGTTTCCTACCAGAGAGTACCGAGCTTTCAAAGCTGGTTTAGAGCATATGGTGAAAGCAGGCTGCTATGGGCCAAGGTACGTCAAGAAGGGCAGCACCGTGAGTCGTCATGAGGGCGTTCAGCGCCAGAGATAA

Coding sequence (CDS)

ATGGGCTCTAGAATTCCATCTCACCAGCTCAGTGGCGGTCTCTATGTCTCCGGCCGCCCTGAGCAGCTCAAGGAGCGGCCCCCTACAATGGGCTCACGCGCTGTCCCTTACACCGGTGGAGACGTCAAGAAATCAGGGGAGCTTGGTAAAATGTTTGACCTCCATCTCGTCGATTCCCAACTTCCGGCCATCCTCCTTTCTAAATCCTCTCGTCCTTCGTCCTCTTCTCAGCACAACAGTGGATCGCACTCTAATTCCGTCCGATCTCCAAGAAACTCATCCGGCCCGATTTCCCTCCCGCCAAACTGGTCTCATAACCTCCGGCCCTTTGGATCCGTCCTCTTGGATCGTCCAGTAGCGGCGGCGGGCGGCGAGAGGACGGCGCTCCGGCCCTCTGGAGCAGACGACGTCTTAGGTAAGACGATGTACCGGGCGGCAGGTCACGAGCTTAGCGAGGATGTCAAATTTAGGTTCAAGGTTTCGAAGGTAGTGTGTGGGCTTTTCTTGTGGTTTTTTCAGTCACGTTTCGTTGCGTTTTGGCGCGTTTCTGATGGTGCGGTGAAGAAAGCCGATTATGATTGGTGCGCCGCGGGGGGGCTTTTTGTTCGCGGCAGTGATTGCGATTCTTTGAACATCGCTTTGGGGAAAAGGGGGATTATTGAGTTAACAGTATTATATGCAATTCCTTCTCTTTTAGGTCGTCACGTGCTTCGGCCAGTTATTCCTCTCGAGTCGTTTCCTACCAGAGAGTACCGAGCTTTCAAAGCTGGTTTAGAGCATATGGTGAAAGCAGGCTGCTATGGGCCAAGGTACGTCAAGAAGGGCAGCACCGTGAGTCGTCATGAGGGCGTTCAGCGCCAGAGATAA

Protein sequence

MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSQLPAILLSKSSRPSSSSQHNSGSHSNSVRSPRNSSGPISLPPNWSHNLRPFGSVLLDRPVAAAGGERTALRPSGADDVLGKTMYRAAGHELSEDVKFRFKVSKVVCGLFLWFFQSRFVAFWRVSDGAVKKADYDWCAAGGLFVRGSDCDSLNIALGKRGIIELTVLYAIPSLLGRHVLRPVIPLESFPTREYRAFKAGLEHMVKAGCYGPRYVKKGSTVSRHEGVQRQR
Homology
[Close]
BLAST of Carg00486 vs. NCBI nr
Match: XP_022978057.1 (uncharacterized membrane protein At1g16860-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 140/296 (47.30%), Postives = 155/296 (52.36%), Query Frame = 0 

Query: 1   MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSQ 60
           MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDS 
Sbjct: 1   MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSP 60

Query: 61  LPAILLSKSSRPSSSSQHNSG------------SHSNSVRSPRNSSGPISLPPNWSHNLR 120
              +  SKS+RPSSSSQHNSG                         GPISLP        
Sbjct: 61  TSGLPPSKSARPSSSSQHNSGXXXXXXXXXXXXXXXXXXXXXXXXXGPISLPXXXXXXXX 120

Query: 121 PFGSVLLDRPVAAAGGERTALRPSGADDVLGKTMYRAAGHELSEDVKFRFKVSKVVCGLF 180
                               L  + +    GKTMY AA   LSEDVK  FKVSKVV   F
Sbjct: 121 XXXXXXXXXXXXXXXXXXXPLEQTTS---FGKTMYGAAVTSLSEDVKIGFKVSKVVVWAF 180

Query: 181 LWFFQSRFV--AFWRVSDGAVKKADYDWCAAGGLFVRGSDCDSLNIALGKRGIIELTVLY 240
           L    +  +  AF  V   AVKK      AAGGL V        NIA GKRG+I     Y
Sbjct: 181 LVVLVTGLLVGAFLMV---AVKK-PIILLAAGGLLVPAVIAVLWNIAWGKRGLIGFVRRY 240

Query: 241 AIPSLLGRHVLRPVIPLESFPTREYRA-FKAGLEHMVKAGCYGPR---YVKKGSTV 279
               L G    + V     +    Y + F+ GL  +VKAG YG +   +VK  + V
Sbjct: 241 PDAELRGAIDGQYVKVTGRYVADFYISDFQTGLRALVKAG-YGAKVAPFVKPSTVV 288

[Close]
BLAST of Carg00486 vs. NCBI nr
Match: XP_022978056.1 (uncharacterized membrane protein At1g16860-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 174.9 bits (442), Expect = 4.0e-40
Identity = 126/247 (51.01%), Postives = 133/247 (53.85%), Query Frame = 0 

Query: 1   MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSQ 60
           MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDS 
Sbjct: 1   MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSP 60

Query: 61  LPAILLSKSSRPSSSSQHNSG------------SHSNSVRSPRNSSGPISLPPNWSHNLR 120
              +  SKS+RPSSSSQHNSG                         GPISLP        
Sbjct: 61  TSGLPPSKSARPSSSSQHNSGXXXXXXXXXXXXXXXXXXXXXXXXXGPISLPXXXXXXXX 120

Query: 121 PFGSVLLDRPVAAAGGERTALRPSGADDVLGKTMYRAAGHELSEDVKFRFKVSKVVCGLF 180
                               L  + +    GKTMY AA   LSEDVK  FKVSKVV   F
Sbjct: 121 XXXXXXXXXXXXXXXXXXXPLEQTTS---FGKTMYGAAVTSLSEDVKIGFKVSKVVVWAF 180

Query: 181 LWFFQSRFV--AFWRVSDGAVKKADYDWCAAGGLFVRGSDCDSLNIALGKRGIIELTVLY 234
           L    +  +  AF  V   AVKK      AAGGL V        NIA GKRG+I     Y
Sbjct: 181 LVVLVTGLLVGAFLMV---AVKK-PIILLAAGGLLVPAVIAVLWNIAWGKRGLIGFVRRY 240

[Close]
BLAST of Carg00486 vs. NCBI nr
Match: XP_023544355.1 (uncharacterized membrane protein At1g16860-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-38
Identity = 137/296 (46.28%), Postives = 151/296 (51.01%), Query Frame = 0 

Query: 1   MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSQ 60
           MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDS 
Sbjct: 1   MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSP 60

Query: 61  LPAILLSKSSRPSSSSQ------------HNSGSHSNSVRSPRNSSGPISLPPNWSHNLR 120
              +  SKSSRPSSSSQ                             GPISLP        
Sbjct: 61  TSGLPPSKSSRPSSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPISLPXXXXXXXX 120

Query: 121 PFGSVLLDRPVAAAGGERTALRPSGADDVLGKTMYRAAGHELSEDVKFRFKVSKVVCGLF 180
                               L  + +    GKTMY AA   LSEDVK  FKVSKVV   F
Sbjct: 121 XXXXXXXXXXXXXXXXXXXPLEQTMS---FGKTMYGAAVTSLSEDVKIGFKVSKVVVWAF 180

Query: 181 LWFFQSRFV--AFWRVSDGAVKKADYDWCAAGGLFVRGSDCDSLNIALGKRGIIELTVLY 240
           L    +  +  AF  V   AVKK      AAGGL V        NIA GKRG+I     Y
Sbjct: 181 LVVLVTGLLVGAFLMV---AVKK-PIILVAAGGLLVPAVIAILWNIAWGKRGLIGFVRRY 240

Query: 241 AIPSLLGRHVLRPVIPLESFPTREYRA-FKAGLEHMVKAGCYGPR---YVKKGSTV 279
               L G    + V     +    Y + F+ GL  +VKAG YG +   +VK  + V
Sbjct: 241 PDAELRGAIDGQYVKVTGRYVADFYISDFQTGLRALVKAG-YGAKVAPFVKPSTVV 288

[Close]
BLAST of Carg00486 vs. NCBI nr
Match: XP_023544354.1 (uncharacterized membrane protein At1g16860-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.9 bits (416), Expect = 4.2e-37
Identity = 123/247 (49.80%), Postives = 129/247 (52.23%), Query Frame = 0 

Query: 1   MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSQ 60
           MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDS 
Sbjct: 1   MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSP 60

Query: 61  LPAILLSKSSRPSSSSQ------------HNSGSHSNSVRSPRNSSGPISLPPNWSHNLR 120
              +  SKSSRPSSSSQ                             GPISLP        
Sbjct: 61  TSGLPPSKSSRPSSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPISLPXXXXXXXX 120

Query: 121 PFGSVLLDRPVAAAGGERTALRPSGADDVLGKTMYRAAGHELSEDVKFRFKVSKVVCGLF 180
                               L  + +    GKTMY AA   LSEDVK  FKVSKVV   F
Sbjct: 121 XXXXXXXXXXXXXXXXXXXPLEQTMS---FGKTMYGAAVTSLSEDVKIGFKVSKVVVWAF 180

Query: 181 LWFFQSRFV--AFWRVSDGAVKKADYDWCAAGGLFVRGSDCDSLNIALGKRGIIELTVLY 234
           L    +  +  AF  V   AVKK      AAGGL V        NIA GKRG+I     Y
Sbjct: 181 LVVLVTGLLVGAFLMV---AVKK-PIILVAAGGLLVPAVIAILWNIAWGKRGLIGFVRRY 240

[Close]
BLAST of Carg00486 vs. NCBI nr
Match: XP_022950850.1 (uncharacterized membrane protein At1g16860-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 164.5 bits (415), Expect = 5.5e-37
Identity = 134/296 (45.27%), Postives = 145/296 (48.99%), Query Frame = 0 

Query: 1   MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSQ 60
           MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGEL KMFDLHLVDS 
Sbjct: 1   MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELAKMFDLHLVDSP 60

Query: 61  LPAILLSKSSRPSSS------------SQHNSGSHSNSVRSPRNSSGPISLPPNWSHNLR 120
                 SKSSRPSSS                               GPISLP        
Sbjct: 61  TSGHPPSKSSRPSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPISLPXXXXXXXX 120

Query: 121 PFGSVLLDRPVAAAGGERTALRPSGADDVLGKTMYRAAGHELSEDVKFRFKVSKVVCGLF 180
                                 P       GKTMY AA   LSEDVK  FKVSKVV   F
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXPLEQTTSFGKTMYGAAVTSLSEDVKLGFKVSKVVVWAF 180

Query: 181 LWFFQSRFV--AFWRVSDGAVKKADYDWCAAGGLFVRGSDCDSLNIALGKRGIIELTVLY 240
           L    +  +  AF  V   AVKK      AAGGL V        NIA GKRG+I     Y
Sbjct: 181 LVVLVTGLLVGAFLMV---AVKK-PIILVAAGGLLVPAVIAILWNIAWGKRGLIGFVRRY 240

Query: 241 AIPSLLGRHVLRPVIPLESFPTREYRA-FKAGLEHMVKAGCYGPR---YVKKGSTV 279
               L G    + V     +    Y + F+ GL  +VKAG YG +   +VK  + V
Sbjct: 241 PDAELRGAIDGQYVKVTGRYVADFYISDFQTGLRALVKAG-YGAKVAPFVKPSTVV 291

[Close]
BLAST of Carg00486 vs. TAIR10
Match: AT4G22290.1 (Ubiquitin-specific protease family C19-related protein)

HSP 1 Score: 92.8 bits (229), Expect = 3.7e-19
Identity = 55/93 (59.14%), Postives = 63/93 (67.74%), Query Frame = 0 

Query: 1  MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSQ 60
          M  RI SHQL  GLYVSG+ EQ KERPPTM +RAVPYTGGD+KKSGELG+MFD+ +VDS 
Sbjct: 1  MAGRIQSHQLPNGLYVSGKLEQPKERPPTMAARAVPYTGGDIKKSGELGRMFDISVVDSA 60

Query: 61 L-----PAILLSKSSRPSSSSQ---HNSGSHSN 86
                P I+   SS  +S  Q     SGS SN
Sbjct: 61 SFQGPPPLIVGGNSSGGTSRLQAPPRVSGSSSN 93

[Close]
BLAST of Carg00486 vs. TAIR10
Match: AT1G78880.1 (Ubiquitin-specific protease family C19-related protein)

HSP 1 Score: 91.7 bits (226), Expect = 8.2e-19
Identity = 53/98 (54.08%), Postives = 66/98 (67.35%), Query Frame = 0 

Query: 1  MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSQ 60
          MGSR  SHQLS GL+VSGRPEQ KE+PPTM S A+PYTGGD+KKSGELGKMFD+    ++
Sbjct: 1  MGSRYASHQLSNGLFVSGRPEQPKEKPPTMSSVAMPYTGGDIKKSGELGKMFDIPTDGTK 60

Query: 61 LPAILLSKSSRPSSSSQHNSGSHSNSVRSPRNSSGPIS 99
                S+ S P +     SG+ S  V    N++G +S
Sbjct: 61 ------SRKSGPITGGSSRSGAQSGPV---PNATGRMS 89

[Close]
BLAST of Carg00486 vs. TAIR10
Match: AT1G16860.1 (Ubiquitin-specific protease family C19-related protein)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-18
Identity = 49/89 (55.06%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 1  MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSQ 60
          MGSR PSHQLS GL+VSGRPEQ KER PTM + A+PYTGGD+K+SGELGKMFD+    ++
Sbjct: 1  MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTK 60

Query: 61 LPAILLSKSSRPSSSSQHNSGSHSNSVRS 90
                S+ S P   +   SGS + + +S
Sbjct: 61 ------SRKSGPIPGAPSRSGSFAGTAQS 83

[Close]
BLAST of Carg00486 vs. Swiss-Prot
Match: sp|Q9FZ45|Y1686_ARATH (Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana OX=3702 GN=At1g16860 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-17
Identity = 49/89 (55.06%), Postives = 62/89 (69.66%), Query Frame = 0 

Query: 1  MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSQ 60
          MGSR PSHQLS GL+VSGRPEQ KER PTM + A+PYTGGD+K+SGELGKMFD+    ++
Sbjct: 1  MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTK 60

Query: 61 LPAILLSKSSRPSSSSQHNSGSHSNSVRS 90
                S+ S P   +   SGS + + +S
Sbjct: 61 ------SRKSGPIPGAPSRSGSFAGTAQS 83

[Close]
BLAST of Carg00486 vs. TrEMBL
Match: tr|A0A103XCG3|A0A103XCG3_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_024433 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.3e-31
Identity = 92/172 (53.49%), Postives = 113/172 (65.70%), Query Frame = 0 

Query: 1   MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSQ 60
           MGSRIPSHQLS GLYVSGRPEQLKER PT+GSRA+PYTGGDVKKSGELGKMFD+ + D  
Sbjct: 1   MGSRIPSHQLSNGLYVSGRPEQLKERQPTLGSRAIPYTGGDVKKSGELGKMFDIPVSDRP 60

Query: 61  LPAILLSKSSRPSSSSQHNSGSHSNSVRS-PRNSSGPISLPPNWSHNLR-PFGSVLLDRP 120
            P +   K +R SSSSQH+S   S S+RS P + SGPI    + S  +  P G +L   P
Sbjct: 61  PPVL---KLNRASSSSQHSS---SGSLRSGPNSGSGPIPKRTSGSGPMAVPTGLLLTSGP 120

Query: 121 VAAAGGERTALRPSGADDVLGKTMYRAAGHELS-EDVKFRFKVSKVVCGLFL 170
           + +  G R+      A    GKT+Y +A   L  +D+K  FKVSK +  +FL
Sbjct: 121 LGSNVGRRSGQLEPPAVSSKGKTIYGSAVTTLGYDDIKLGFKVSKKLMWMFL 166

[Close]
BLAST of Carg00486 vs. TrEMBL
Match: tr|A0A1S3AZT4|A0A1S3AZT4_CUCME (uncharacterized membrane protein At1g16860 OS=Cucumis melo OX=3656 GN=LOC103484649 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.9e-30
Identity = 96/182 (52.75%), Postives = 98/182 (53.85%), Query Frame = 0 

Query: 1   MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSQ 60
           MGSRIPSHQLS GLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDS 
Sbjct: 1   MGSRIPSHQLSSGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSP 60

Query: 61  LPAILLSKSSRPSS------------SSQHNSGSHSNSVRSPRNSSGPISLPPNWSHNLR 120
                 SKSSRPSS                                 PISL P       
Sbjct: 61  TSGPPPSKSSRPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPISLQPTGLITSG 120

Query: 121 PF-GSVLLDRPVAAAGGERTALRPSGADDVLGKTMYRAAGHELSEDVKFRFKVSKVVCGL 170
           P  G            G R+      A    GKTMY +A   LSEDVK  FKVSK V   
Sbjct: 121 PMTGXXXXXXXXXXXXGRRSGPLEQAAS--FGKTMYGSAVTSLSEDVKIGFKVSKAVVWA 180

[Close]
BLAST of Carg00486 vs. TrEMBL
Match: tr|A0A0A0KJT7|A0A0A0KJT7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511850 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 9.5e-30
Identity = 95/182 (52.20%), Postives = 98/182 (53.85%), Query Frame = 0 

Query: 1   MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSQ 60
           MGSRIPSHQLS GLYVSGRPEQLKERPPTMGSRAVPYTGGD+KKSGELGKMFDLHLVDS 
Sbjct: 1   MGSRIPSHQLSSGLYVSGRPEQLKERPPTMGSRAVPYTGGDIKKSGELGKMFDLHLVDSP 60

Query: 61  LPAILLSKSSR------------PSSSSQHNSGSHSNSVRSPRNSSGPISLPPNWSHNLR 120
             A   SKSSR                                    PISL P       
Sbjct: 61  TSAPPPSKSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPISLQPTGLITSG 120

Query: 121 P-FGSVLLDRPVAAAGGERTALRPSGADDVLGKTMYRAAGHELSEDVKFRFKVSKVVCGL 170
           P  GS          GG R+      A    GKTMY +A   LSEDVK  FKVSK V   
Sbjct: 121 PMMGSXXXXXXXXXXGGRRSGPLEQTASS--GKTMYGSAVTSLSEDVKIGFKVSKAVVWA 180

[Close]
BLAST of Carg00486 vs. TrEMBL
Match: tr|A0A2J6JVT6|A0A2J6JVT6_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X14641 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28
Identity = 87/173 (50.29%), Postives = 106/173 (61.27%), Query Frame = 0 

Query: 1   MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSQ 60
           MGSRIPSHQLS GLYVSGRPEQ KER P +GSRA+PYTGGDVKKSGELGKMFD+ + D  
Sbjct: 1   MGSRIPSHQLSNGLYVSGRPEQQKERQPIIGSRAIPYTGGDVKKSGELGKMFDISVSDHP 60

Query: 61  LPAILLSKSSRPSSSSQHNSGSHSNSVRSPRNSSGPISLPPNWSH---NLRPFGSVLLDR 120
            P +   K  R SSSSQ +SGS  +    P + SGPI    + S     L P G +L   
Sbjct: 61  PPVL---KPHRASSSSQQSSGSLRS---GPNSGSGPIPKRLSGSGPMVGLHPTGLLLTSG 120

Query: 121 PVAAAGGERTALRPSGADDVLGKTMYRAAGHELS-EDVKFRFKVSKVVCGLFL 170
           P+ ++ G R+           GKT+Y +A   L  +DVK  FKVSK +  + L
Sbjct: 121 PLGSSVGRRSGQLEPPTVSSKGKTIYGSAVTTLGYDDVKLGFKVSKKLMWMLL 167

[Close]
BLAST of Carg00486 vs. TrEMBL
Match: tr|A0A200PSE3|A0A200PSE3_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8821g10 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.5e-27
Identity = 85/169 (50.30%), Postives = 102/169 (60.36%), Query Frame = 0 

Query: 1   MGSRIPSHQLSGGLYVSGRPEQLKERPPTMGSRAVPYTGGDVKKSGELGKMFDLHLVDSQ 60
           MG+RIPSHQLS GLYVSGRPEQ KER PTMGSR++ YTGGDVKKSGELGKMFD+ +VD  
Sbjct: 1   MGTRIPSHQLSSGLYVSGRPEQHKERQPTMGSRSIIYTGGDVKKSGELGKMFDIPVVDPS 60

Query: 61  LPAILLSKSSRPSSSSQHNSGS----HSNSVRSPRNSSGPISLPPNWSHNLRPFGSVLLD 120
                  K SRPSSSSQHNSGS                            L+P G ++  
Sbjct: 61  SNTPPSLKPSRPSSSSQHNSGSIRXXXXXXXXXXXXXXXXXXXXXXXQMPLQPTG-LITS 120

Query: 121 RPVAAAGGERTA-LRPSGADDVLGKTMYRAAGHELSEDVKFRFKVSKVV 165
            P+ ++G  R+  L PS +   +GK +Y  A   +  DVKF FK+SKVV
Sbjct: 121 GPLGSSGNRRSGQLEPSVS---IGKAVYGTAVTNVGADVKFGFKLSKVV 165

The following BLAST results are available for this feature:
BLAST of Carg00486 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022978057.11.3e-4147.30uncharacterized membrane protein At1g16860-like isoform X2 [Cucurbita maxima][more]
XP_022978056.14.0e-4051.01uncharacterized membrane protein At1g16860-like isoform X1 [Cucurbita maxima][more]
XP_023544355.11.3e-3846.28uncharacterized membrane protein At1g16860-like isoform X2 [Cucurbita pepo subsp... [more]
XP_023544354.14.2e-3749.80uncharacterized membrane protein At1g16860-like isoform X1 [Cucurbita pepo subsp... [more]
XP_022950850.15.5e-3745.27uncharacterized membrane protein At1g16860-like isoform X2 [Cucurbita moschata][more]
BLAST of Carg00486 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G22290.13.7e-1959.14Ubiquitin-specific protease family C19-related protein[more]
AT1G78880.18.2e-1954.08Ubiquitin-specific protease family C19-related protein[more]
AT1G16860.11.4e-1855.06Ubiquitin-specific protease family C19-related protein[more]
BLAST of Carg00486 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FZ45|Y1686_ARATH2.5e-1755.06Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana OX=3702 GN=At... [more]
BLAST of Carg00486 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A103XCG3|A0A103XCG3_CYNCS2.3e-3153.49Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_024... [more]
tr|A0A1S3AZT4|A0A1S3AZT4_CUCME1.9e-3052.75uncharacterized membrane protein At1g16860 OS=Cucumis melo OX=3656 GN=LOC1034846... [more]
tr|A0A0A0KJT7|A0A0A0KJT7_CUCSA9.5e-3052.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511850 PE=4 SV=1[more]
tr|A0A2J6JVT6|A0A2J6JVT6_LACSA2.3e-2850.29Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X14641 PE=4 SV=1[more]
tr|A0A200PSE3|A0A200PSE3_9MAGN1.5e-2750.30Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8821g10 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00486-RACarg00486-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..101
NoneNo IPR availablePANTHERPTHR33709:SF2SUBFAMILY NOT NAMEDcoord: 1..176
NoneNo IPR availablePANTHERPTHR33709FAMILY NOT NAMEDcoord: 1..176

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00486Cla97C01G021170Watermelon (97103) v2carwmbB0426
Carg00486Bhi03G000483Wax gourdcarwgoB0488
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg00486Carg07866Silver-seed gourdcarcarB425
The following block(s) are covering this gene:

None