Carg00317 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTACATTTGATTTCTTAATTGCTCACCATTTCTATTGGGCTATTTTTACTTGGTCTTGGATCGGGTGCTTGTGTGGGGAAGCTAAATTGTCATCTCAGTGTTTTTTCCACTTCTGTAGAATTATAGAACCCCTTGCATCAAGGTGTGCAAAGTTCAGGTTTAAGCCACTCTCTGAAGAGGTCATGGGCAAGCGCATATTGCACATTAGCAATGAAGAAGGTCTAAGTCTAGATGAAGAGGTTTGCTCTTTGCTGCTTAGTATTAGAAATTTTGGTTTGAAATAAGCTATTCGGTGTGATGTAAACTTGCAATCTGTATAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTGCGTCGAGCTATCACATATTTACAGGTTTGATTTAGTCTGCAACATTTCTCATTTTGTAGGTTTACAACCTTTCTTTTGATATTCACTGTCATGTTAAACATGATCATGTTAGGAGTTTGGATGATTGAAGGGAAGAGAACCACATGTTTTACTACAATTTGACAATGTTATACTTTAGTTAAGGCTATATGAAATTAACCTTTGGGTTATCAATTGTTCTGATTCATCATTGCGCCTGAATAATTGACCTTTTGATTTCTTTTTTGGAATTATTGTGTGGGGAATTGTTCACCATCCATTTCTATTGGATACTTGAGTTTTCTTTCCTATAACTTACAGTGCTTGTAAAGTAGAAAGAGTACACATGATTGTAGCAACTATTGACGTATCCTTGCAGTTCCTTTGTCCATGTCTGTGTACTGATAAAAATTGCATTAGTGTGTAGACTTCATAGTGGTTGCAAACCAGTTGGGACTGCAAACAGTTTTCTGCTTTAAATTTTATAACCAACAATGCTACATGATGTCCAACTCTGATATCCCTTGGAACGGAAAATTAGAGACAAATGAGGGTGAGAAGAGCTTATGTTGCGTTAATGCATAGAATCAGATTACGGGAGAATTTGATGGGCAATAAATCCAATTGCTCATTGCCCATTGACAAGAAGCTCAATTGTTGTAGTTATTAATCTGGATCTTTAGAATGAAGTTTGTTTAAGAATTCATTACTGCTGTTATTGTACATTTCTTGAAGCAAGTGTTTCAATCTTTTCTAACTGCTTTCCTTTTCTTGTTCTTTCTTTTTTCTCCAGTCAGCTGCACGTTTATTTGGATCATCAATCTCTTCCAAGGATCTGATTAGCGTGTCTGGGGTGAGTTATGTGAAATTTTGATAAGTTATCATCCCTAGAATACTCAATACAGATAGTTAAAAATGATTGTCCTTAATAATGGCTCACTTTGCTCCCATTCTTGTTGAATGTTGATGCTATCTGTATATGCCTTGCCGGCTCATGATCTCTTCTGAAACTGTAGCATTGGTGCATGACCACAAATAAACAAGATGCTATCTGTTAATTTTATTTTTTCTTTTTGCCATTGATTATAATATTTACTAGATTATTAGGCTTTTTGGAAATTTGATAGTGGATGGGTTCTCTTTCTTGTTCTCAAAAGTATGGCCTATAATTTGTTCATGAAATATTTTCTTGGGTAATCATAATTATTTTTATCAATTTACAGATTATCCCACGGGAGGTTGTTGATGAGCTTTTTGCTGCTTGTAAAAGTGGTAACTTCGATCTTGCAAATAAGGAAGTCAATAATGTAATTGCAGAAGGATATCCTGTGGCTCAGATGCTTTCACAGGTTTTCTTTTTGCTTAATCTATATCATGTTATTGTATTTTTCAAATGATGAACGTAGATAGACAAAACTCATATGATTCCTACAGATATTTGAGGTGGTTATTGAAGCCCATGATTTGCAAGATGAACAAAAGGCCAAGATATGCAAGAAGTTGGCTGAAGCAGATAAGGTCACTTCTATCTCTTTCCATGTTCTATTGCAGTTTTGCTATCTAAAGTTCATGTGAAGTATGCATCAAGTTGGCTACATTATTAGTTTCAATTGTAATTTGGAATTGACAACTTAGAGTCGATAGATTCTACCAATCTTTTATCTATATATCTATATCTGTATATATATATTAATTAACATTAAGAGCAGCCCATCATATCTTCTTGCATTTAATGTTCGTAAGTACTTCGTATTATGTTGACAAATATTTTACTTGGTTTGGTTTTAATCCTGATTGAAAATTACATTGATACAAAATGGAAATTTACCCAATAATATTCTGGAATGGCATTTATTTCATCATGCAAATCAACATTGTTGCTATGCCAATCTGCAGTGTCTGGTTGATGGTGCGGATGAATATTTGCAGCTGCTGGATGTGGTTAGTCAAACAATGCAAGCTTTGAGTAGCAGTATGCAACTGTAAATATTTGATTAAACTCTTCCATGTTGTATAGAAACAAGGTTATTCCTGACTTGTAGAAATTGTTGGAACTGTGCTCTTAGCTAGCTGGTGTGTACCTTGCTAATTTACAAGTTAGATCTTGTTTATTTTAGGTGGATTTGAGAGTTTTGTTTTTAGTTTTAGTTTTTTTTTTTAATTTTAAT ATGGTTACATTTGATTTCTTAATTGCTCACCATTTCTATTGGGCTATTTTTACTTGGTCTTGGATCGGGTGCTTGTGTGGGGAAGCTAAATTGTCATCTCAGTGTTTTTTCCACTTCTGTAGAATTATAGAACCCCTTGCATCAAGGTGTGCAAAGTTCAGGTTTAAGCCACTCTCTGAAGAGGTCATGGGCAAGCGCATATTGCACATTAGCAATGAAGAAGGTCTAAGTCTAGATGAAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTGCGTCGAGCTATCACATATTTACAGTCAGCTGCACGTTTATTTGGATCATCAATCTCTTCCAAGGATCTGATTAGCGTGTCTGGGATTATCCCACGGGAGGTTGTTGATGAGCTTTTTGCTGCTTGTAAAAGTGGTAACTTCGATCTTGCAAATAAGGAAGTCAATAATGTAATTGCAGAAGGATATCCTGTGGCTCAGATGCTTTCACAGATATTTGAGGTGGTTATTGAAGCCCATGATTTGCAAGATGAACAAAAGGCCAAGATATGCAAGAAGTTGGCTGAAGCAGATAAGTGTCTGGTTGATGGTGCGGATGAATATTTGCAGCTGCTGGATGTGGTTAGTCAAACAATGCAAGCTTTGAGTAGCAGTATGCAACTGTAAATATTTGATTAAACTCTTCCATGTTGTATAGAAACAAGGTTATTCCTGACTTGTAGAAATTGTTGGAACTGTGCTCTTAGCTAGCTGGTGTGTACCTTGCTAATTTACAAGTTAGATCTTGTTTATTTTAGGTGGATTTGAGAGTTTTGTTTTTAGTTTTAGTTTTTTTTTTTAATTTTAAT ATGGTTACATTTGATTTCTTAATTGCTCACCATTTCTATTGGGCTATTTTTACTTGGTCTTGGATCGGGTGCTTGTGTGGGGAAGCTAAATTGTCATCTCAGTGTTTTTTCCACTTCTGTAGAATTATAGAACCCCTTGCATCAAGGTGTGCAAAGTTCAGGTTTAAGCCACTCTCTGAAGAGGTCATGGGCAAGCGCATATTGCACATTAGCAATGAAGAAGGTCTAAGTCTAGATGAAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTGCGTCGAGCTATCACATATTTACAGTCAGCTGCACGTTTATTTGGATCATCAATCTCTTCCAAGGATCTGATTAGCGTGTCTGGGATTATCCCACGGGAGGTTGTTGATGAGCTTTTTGCTGCTTGTAAAAGTGGTAACTTCGATCTTGCAAATAAGGAAGTCAATAATGTAATTGCAGAAGGATATCCTGTGGCTCAGATGCTTTCACAGATATTTGAGGTGGTTATTGAAGCCCATGATTTGCAAGATGAACAAAAGGCCAAGATATGCAAGAAGTTGGCTGAAGCAGATAAGTGTCTGGTTGATGGTGCGGATGAATATTTGCAGCTGCTGGATGTGGTTAGTCAAACAATGCAAGCTTTGAGTAGCAGTATGCAACTGTAA MVTFDFLIAHHFYWAIFTWSWIGCLCGEAKLSSQCFFHFCRIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL
BLAST of Carg00317 vs. NCBI nr
Match: XP_022940132.1 (replication factor C subunit 4 [Cucurbita moschata]) HSP 1 Score: 338.2 bits (866), Expect = 2.1e-89 Identity = 182/190 (95.79%), Postives = 183/190 (96.32%), Query Frame = 0
BLAST of Carg00317 vs. NCBI nr
Match: XP_022981026.1 (replication factor C subunit 4 [Cucurbita maxima]) HSP 1 Score: 335.1 bits (858), Expect = 1.8e-88 Identity = 181/190 (95.26%), Postives = 181/190 (95.26%), Query Frame = 0
BLAST of Carg00317 vs. NCBI nr
Match: XP_023523758.1 (replication factor C subunit 4 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 335.1 bits (858), Expect = 1.8e-88 Identity = 181/190 (95.26%), Postives = 182/190 (95.79%), Query Frame = 0
BLAST of Carg00317 vs. NCBI nr
Match: XP_008444196.1 (PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 4 [Cucumis melo]) HSP 1 Score: 312.0 bits (798), Expect = 1.6e-81 Identity = 167/184 (90.76%), Postives = 174/184 (94.57%), Query Frame = 0
BLAST of Carg00317 vs. NCBI nr
Match: XP_022134048.1 (replication factor C subunit 4 [Momordica charantia]) HSP 1 Score: 308.5 bits (789), Expect = 1.8e-80 Identity = 169/189 (89.42%), Postives = 174/189 (92.06%), Query Frame = 0
BLAST of Carg00317 vs. TAIR10
Match: AT1G21690.3 (ATPase family associated with various cellular activities (AAA) ) HSP 1 Score: 230.3 bits (586), Expect = 1.1e-60 Identity = 119/162 (73.46%), Postives = 140/162 (86.42%), Query Frame = 0
BLAST of Carg00317 vs. TAIR10
Match: AT1G63160.1 (replication factor C 2) HSP 1 Score: 59.7 bits (143), Expect = 2.6e-09 Identity = 48/180 (26.67%), Postives = 86/180 (47.78%), Query Frame = 0
BLAST of Carg00317 vs. TAIR10
Match: AT1G77470.1 (replication factor C subunit 3) HSP 1 Score: 53.1 bits (126), Expect = 2.5e-07 Identity = 46/194 (23.71%), Postives = 92/194 (47.42%), Query Frame = 0
BLAST of Carg00317 vs. TAIR10
Match: AT5G22010.1 (replication factor C1) HSP 1 Score: 43.9 bits (102), Expect = 1.5e-04 Identity = 31/105 (29.52%), Postives = 53/105 (50.48%), Query Frame = 0
BLAST of Carg00317 vs. Swiss-Prot
Match: sp|Q9FXM3|RFC2_ORYSJ (Replication factor C subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC2 PE=2 SV=1) HSP 1 Score: 272.7 bits (696), Expect = 3.6e-72 Identity = 140/184 (76.09%), Postives = 159/184 (86.41%), Query Frame = 0
BLAST of Carg00317 vs. Swiss-Prot
Match: sp|Q93ZX1|RFC4_ARATH (Replication factor C subunit 4 OS=Arabidopsis thaliana OX=3702 GN=RFC4 PE=2 SV=1) HSP 1 Score: 262.3 bits (669), Expect = 4.8e-69 Identity = 139/190 (73.16%), Postives = 161/190 (84.74%), Query Frame = 0
BLAST of Carg00317 vs. Swiss-Prot
Match: sp|P35249|RFC4_HUMAN (Replication factor C subunit 4 OS=Homo sapiens OX=9606 GN=RFC4 PE=1 SV=2) HSP 1 Score: 174.5 bits (441), Expect = 1.3e-42 Identity = 90/194 (46.39%), Postives = 138/194 (71.13%), Query Frame = 0
BLAST of Carg00317 vs. Swiss-Prot
Match: sp|Q99J62|RFC4_MOUSE (Replication factor C subunit 4 OS=Mus musculus OX=10090 GN=Rfc4 PE=1 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 6.6e-42 Identity = 88/194 (45.36%), Postives = 133/194 (68.56%), Query Frame = 0
BLAST of Carg00317 vs. Swiss-Prot
Match: sp|Q54MD4|RFC4_DICDI (Probable replication factor C subunit 4 OS=Dictyostelium discoideum OX=44689 GN=rfc4 PE=3 SV=1) HSP 1 Score: 158.7 bits (400), Expect = 7.5e-38 Identity = 76/181 (41.99%), Postives = 119/181 (65.75%), Query Frame = 0
BLAST of Carg00317 vs. TrEMBL
Match: tr|A0A1S3B9T6|A0A1S3B9T6_CUCME (LOW QUALITY PROTEIN: replication factor C subunit 4 OS=Cucumis melo OX=3656 GN=LOC103487609 PE=4 SV=1) HSP 1 Score: 312.0 bits (798), Expect = 1.1e-81 Identity = 167/184 (90.76%), Postives = 174/184 (94.57%), Query Frame = 0
BLAST of Carg00317 vs. TrEMBL
Match: tr|A0A0A0KYI8|A0A0A0KYI8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G361280 PE=4 SV=1) HSP 1 Score: 308.1 bits (788), Expect = 1.6e-80 Identity = 164/186 (88.17%), Postives = 171/186 (91.94%), Query Frame = 0
BLAST of Carg00317 vs. TrEMBL
Match: tr|M1A641|M1A641_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102583635 PE=4 SV=1) HSP 1 Score: 292.0 bits (746), Expect = 1.2e-75 Identity = 151/189 (79.89%), Postives = 169/189 (89.42%), Query Frame = 0
BLAST of Carg00317 vs. TrEMBL
Match: tr|A0A2G2WYH3|A0A2G2WYH3_CAPBA (Replication factor C subunit 4 (Fragment) OS=Capsicum baccatum OX=33114 GN=CQW23_09997 PE=4 SV=1) HSP 1 Score: 290.4 bits (742), Expect = 3.3e-75 Identity = 149/189 (78.84%), Postives = 169/189 (89.42%), Query Frame = 0
BLAST of Carg00317 vs. TrEMBL
Match: tr|W9QYZ5|W9QYZ5_9ROSA (Replication factor C subunit 4 OS=Morus notabilis OX=981085 GN=L484_013384 PE=4 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 4.4e-75 Identity = 151/184 (82.07%), Postives = 165/184 (89.67%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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