Carg00317 (gene) Silver-seed gourd

NameCarg00317
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionReplication factor C subunit 4
LocationCucurbita_argyrosperma_scaffold_001 : 1728573 .. 1731121 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTACATTTGATTTCTTAATTGCTCACCATTTCTATTGGGCTATTTTTACTTGGTCTTGGATCGGGTGCTTGTGTGGGGAAGCTAAATTGTCATCTCAGTGTTTTTTCCACTTCTGTAGAATTATAGAACCCCTTGCATCAAGGTGTGCAAAGTTCAGGTTTAAGCCACTCTCTGAAGAGGTCATGGGCAAGCGCATATTGCACATTAGCAATGAAGAAGGTCTAAGTCTAGATGAAGAGGTTTGCTCTTTGCTGCTTAGTATTAGAAATTTTGGTTTGAAATAAGCTATTCGGTGTGATGTAAACTTGCAATCTGTATAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTGCGTCGAGCTATCACATATTTACAGGTTTGATTTAGTCTGCAACATTTCTCATTTTGTAGGTTTACAACCTTTCTTTTGATATTCACTGTCATGTTAAACATGATCATGTTAGGAGTTTGGATGATTGAAGGGAAGAGAACCACATGTTTTACTACAATTTGACAATGTTATACTTTAGTTAAGGCTATATGAAATTAACCTTTGGGTTATCAATTGTTCTGATTCATCATTGCGCCTGAATAATTGACCTTTTGATTTCTTTTTTGGAATTATTGTGTGGGGAATTGTTCACCATCCATTTCTATTGGATACTTGAGTTTTCTTTCCTATAACTTACAGTGCTTGTAAAGTAGAAAGAGTACACATGATTGTAGCAACTATTGACGTATCCTTGCAGTTCCTTTGTCCATGTCTGTGTACTGATAAAAATTGCATTAGTGTGTAGACTTCATAGTGGTTGCAAACCAGTTGGGACTGCAAACAGTTTTCTGCTTTAAATTTTATAACCAACAATGCTACATGATGTCCAACTCTGATATCCCTTGGAACGGAAAATTAGAGACAAATGAGGGTGAGAAGAGCTTATGTTGCGTTAATGCATAGAATCAGATTACGGGAGAATTTGATGGGCAATAAATCCAATTGCTCATTGCCCATTGACAAGAAGCTCAATTGTTGTAGTTATTAATCTGGATCTTTAGAATGAAGTTTGTTTAAGAATTCATTACTGCTGTTATTGTACATTTCTTGAAGCAAGTGTTTCAATCTTTTCTAACTGCTTTCCTTTTCTTGTTCTTTCTTTTTTCTCCAGTCAGCTGCACGTTTATTTGGATCATCAATCTCTTCCAAGGATCTGATTAGCGTGTCTGGGGTGAGTTATGTGAAATTTTGATAAGTTATCATCCCTAGAATACTCAATACAGATAGTTAAAAATGATTGTCCTTAATAATGGCTCACTTTGCTCCCATTCTTGTTGAATGTTGATGCTATCTGTATATGCCTTGCCGGCTCATGATCTCTTCTGAAACTGTAGCATTGGTGCATGACCACAAATAAACAAGATGCTATCTGTTAATTTTATTTTTTCTTTTTGCCATTGATTATAATATTTACTAGATTATTAGGCTTTTTGGAAATTTGATAGTGGATGGGTTCTCTTTCTTGTTCTCAAAAGTATGGCCTATAATTTGTTCATGAAATATTTTCTTGGGTAATCATAATTATTTTTATCAATTTACAGATTATCCCACGGGAGGTTGTTGATGAGCTTTTTGCTGCTTGTAAAAGTGGTAACTTCGATCTTGCAAATAAGGAAGTCAATAATGTAATTGCAGAAGGATATCCTGTGGCTCAGATGCTTTCACAGGTTTTCTTTTTGCTTAATCTATATCATGTTATTGTATTTTTCAAATGATGAACGTAGATAGACAAAACTCATATGATTCCTACAGATATTTGAGGTGGTTATTGAAGCCCATGATTTGCAAGATGAACAAAAGGCCAAGATATGCAAGAAGTTGGCTGAAGCAGATAAGGTCACTTCTATCTCTTTCCATGTTCTATTGCAGTTTTGCTATCTAAAGTTCATGTGAAGTATGCATCAAGTTGGCTACATTATTAGTTTCAATTGTAATTTGGAATTGACAACTTAGAGTCGATAGATTCTACCAATCTTTTATCTATATATCTATATCTGTATATATATATTAATTAACATTAAGAGCAGCCCATCATATCTTCTTGCATTTAATGTTCGTAAGTACTTCGTATTATGTTGACAAATATTTTACTTGGTTTGGTTTTAATCCTGATTGAAAATTACATTGATACAAAATGGAAATTTACCCAATAATATTCTGGAATGGCATTTATTTCATCATGCAAATCAACATTGTTGCTATGCCAATCTGCAGTGTCTGGTTGATGGTGCGGATGAATATTTGCAGCTGCTGGATGTGGTTAGTCAAACAATGCAAGCTTTGAGTAGCAGTATGCAACTGTAAATATTTGATTAAACTCTTCCATGTTGTATAGAAACAAGGTTATTCCTGACTTGTAGAAATTGTTGGAACTGTGCTCTTAGCTAGCTGGTGTGTACCTTGCTAATTTACAAGTTAGATCTTGTTTATTTTAGGTGGATTTGAGAGTTTTGTTTTTAGTTTTAGTTTTTTTTTTTAATTTTAAT

mRNA sequence

ATGGTTACATTTGATTTCTTAATTGCTCACCATTTCTATTGGGCTATTTTTACTTGGTCTTGGATCGGGTGCTTGTGTGGGGAAGCTAAATTGTCATCTCAGTGTTTTTTCCACTTCTGTAGAATTATAGAACCCCTTGCATCAAGGTGTGCAAAGTTCAGGTTTAAGCCACTCTCTGAAGAGGTCATGGGCAAGCGCATATTGCACATTAGCAATGAAGAAGGTCTAAGTCTAGATGAAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTGCGTCGAGCTATCACATATTTACAGTCAGCTGCACGTTTATTTGGATCATCAATCTCTTCCAAGGATCTGATTAGCGTGTCTGGGATTATCCCACGGGAGGTTGTTGATGAGCTTTTTGCTGCTTGTAAAAGTGGTAACTTCGATCTTGCAAATAAGGAAGTCAATAATGTAATTGCAGAAGGATATCCTGTGGCTCAGATGCTTTCACAGATATTTGAGGTGGTTATTGAAGCCCATGATTTGCAAGATGAACAAAAGGCCAAGATATGCAAGAAGTTGGCTGAAGCAGATAAGTGTCTGGTTGATGGTGCGGATGAATATTTGCAGCTGCTGGATGTGGTTAGTCAAACAATGCAAGCTTTGAGTAGCAGTATGCAACTGTAAATATTTGATTAAACTCTTCCATGTTGTATAGAAACAAGGTTATTCCTGACTTGTAGAAATTGTTGGAACTGTGCTCTTAGCTAGCTGGTGTGTACCTTGCTAATTTACAAGTTAGATCTTGTTTATTTTAGGTGGATTTGAGAGTTTTGTTTTTAGTTTTAGTTTTTTTTTTTAATTTTAAT

Coding sequence (CDS)

ATGGTTACATTTGATTTCTTAATTGCTCACCATTTCTATTGGGCTATTTTTACTTGGTCTTGGATCGGGTGCTTGTGTGGGGAAGCTAAATTGTCATCTCAGTGTTTTTTCCACTTCTGTAGAATTATAGAACCCCTTGCATCAAGGTGTGCAAAGTTCAGGTTTAAGCCACTCTCTGAAGAGGTCATGGGCAAGCGCATATTGCACATTAGCAATGAAGAAGGTCTAAGTCTAGATGAAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTGCGTCGAGCTATCACATATTTACAGTCAGCTGCACGTTTATTTGGATCATCAATCTCTTCCAAGGATCTGATTAGCGTGTCTGGGATTATCCCACGGGAGGTTGTTGATGAGCTTTTTGCTGCTTGTAAAAGTGGTAACTTCGATCTTGCAAATAAGGAAGTCAATAATGTAATTGCAGAAGGATATCCTGTGGCTCAGATGCTTTCACAGATATTTGAGGTGGTTATTGAAGCCCATGATTTGCAAGATGAACAAAAGGCCAAGATATGCAAGAAGTTGGCTGAAGCAGATAAGTGTCTGGTTGATGGTGCGGATGAATATTTGCAGCTGCTGGATGTGGTTAGTCAAACAATGCAAGCTTTGAGTAGCAGTATGCAACTGTAA

Protein sequence

MVTFDFLIAHHFYWAIFTWSWIGCLCGEAKLSSQCFFHFCRIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL
BLAST of Carg00317 vs. NCBI nr
Match: XP_022940132.1 (replication factor C subunit 4 [Cucurbita moschata])

HSP 1 Score: 338.2 bits (866), Expect = 2.1e-89
Identity = 182/190 (95.79%), Postives = 183/190 (96.32%), Query Frame = 0

Query: 36  FFHFC----RIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQ 95
           FF  C    RIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQ
Sbjct: 148 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQ 207

Query: 96  GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNV 155
           GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAAC+SGNFDLANKEVNNV
Sbjct: 208 GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACRSGNFDLANKEVNNV 267

Query: 156 IAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQT 215
           IAEGYPVAQMLSQIFEVVIEAHDLQDEQ AKICKKLAEADKCLVDGADEYLQLLDVVSQT
Sbjct: 268 IAEGYPVAQMLSQIFEVVIEAHDLQDEQTAKICKKLAEADKCLVDGADEYLQLLDVVSQT 327

Query: 216 MQALSSSMQL 222
           MQALSSSMQL
Sbjct: 328 MQALSSSMQL 337

BLAST of Carg00317 vs. NCBI nr
Match: XP_022981026.1 (replication factor C subunit 4 [Cucurbita maxima])

HSP 1 Score: 335.1 bits (858), Expect = 1.8e-88
Identity = 181/190 (95.26%), Postives = 181/190 (95.26%), Query Frame = 0

Query: 36  FFHFC----RIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQ 95
           FF  C    RIIEPLASRCAKFRFKPLSEEVM KRILHISNEEGLSLD EALSTL SISQ
Sbjct: 148 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLGSISQ 207

Query: 96  GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNV 155
           GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNV
Sbjct: 208 GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNV 267

Query: 156 IAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQT 215
           IAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQT
Sbjct: 268 IAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQT 327

Query: 216 MQALSSSMQL 222
           MQALSSSMQL
Sbjct: 328 MQALSSSMQL 337

BLAST of Carg00317 vs. NCBI nr
Match: XP_023523758.1 (replication factor C subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335.1 bits (858), Expect = 1.8e-88
Identity = 181/190 (95.26%), Postives = 182/190 (95.79%), Query Frame = 0

Query: 36  FFHFC----RIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQ 95
           FF  C    RIIEPLASRCAKFRFKPLSE+VM KRILHISNEEGLSLD EALSTLSSISQ
Sbjct: 148 FFFICNYISRIIEPLASRCAKFRFKPLSEKVMSKRILHISNEEGLSLDGEALSTLSSISQ 207

Query: 96  GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNV 155
           GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNV
Sbjct: 208 GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNV 267

Query: 156 IAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQT 215
           IAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQT
Sbjct: 268 IAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQT 327

Query: 216 MQALSSSMQL 222
           MQALSSSMQL
Sbjct: 328 MQALSSSMQL 337

BLAST of Carg00317 vs. NCBI nr
Match: XP_008444196.1 (PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 4 [Cucumis melo])

HSP 1 Score: 312.0 bits (798), Expect = 1.6e-81
Identity = 167/184 (90.76%), Postives = 174/184 (94.57%), Query Frame = 0

Query: 38  HFCRIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQGDLRRA 97
           +  RIIEPLASRCAKFRFKPLSEEVM KRILHISNEEGLSLD EALSTLSS+SQGDLRRA
Sbjct: 154 YISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLSSMSQGDLRRA 213

Query: 98  ITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNVIAEGYP 157
           ITYLQSAARLFGSSISSKDL++VSGIIPREVVD LF ACKSGNFD ANKEVNNV+AEGYP
Sbjct: 214 ITYLQSAARLFGSSISSKDLVNVSGIIPREVVDALFTACKSGNFDTANKEVNNVLAEGYP 273

Query: 158 VAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQTMQALSS 217
           VAQMLSQIFEVVIE +DLQDEQKA+ICKKLAEADKCLVDGADEYLQLLDVVSQTMQAL  
Sbjct: 274 VAQMLSQIFEVVIEDNDLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQTMQAL-R 333

Query: 218 SMQL 222
           SMQL
Sbjct: 334 SMQL 336

BLAST of Carg00317 vs. NCBI nr
Match: XP_022134048.1 (replication factor C subunit 4 [Momordica charantia])

HSP 1 Score: 308.5 bits (789), Expect = 1.8e-80
Identity = 169/189 (89.42%), Postives = 174/189 (92.06%), Query Frame = 0

Query: 36  FFHFC----RIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQ 95
           FF  C    RIIEPLASRCAKFRFKPLSEEVM KRILHI NEE LSLD EALSTLSSISQ
Sbjct: 148 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHICNEECLSLDGEALSTLSSISQ 207

Query: 96  GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNV 155
           GDLRRAITYLQSAARLFGSSISSKDLISVSG+IPREVV+ LFAACKSGNFDLANKEVNNV
Sbjct: 208 GDLRRAITYLQSAARLFGSSISSKDLISVSGVIPREVVNALFAACKSGNFDLANKEVNNV 267

Query: 156 IAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQT 215
            AEGYPVAQMLSQIFEVV+EA+ LQDEQKA+ICKKLAEADKCLVDGADEYLQLLDVVSQT
Sbjct: 268 TAEGYPVAQMLSQIFEVVVEANHLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQT 327

Query: 216 MQALSSSMQ 221
           MQA S SMQ
Sbjct: 328 MQA-SCSMQ 335

BLAST of Carg00317 vs. TAIR10
Match: AT1G21690.3 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 230.3 bits (586), Expect = 1.1e-60
Identity = 119/162 (73.46%), Postives = 140/162 (86.42%), Query Frame = 0

Query: 36  FFHFC----RIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQ 95
           FF  C    RIIEPLASRCAKFRFKPLSEEVM  RILHI NEEGLSLD EALSTLSSISQ
Sbjct: 148 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQ 207

Query: 96  GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNV 155
           GDLRRAITYLQSA RLFGS+I+S DL++VSG++P EVV++LF ACKSG+FD+ANKEV+N+
Sbjct: 208 GDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIANKEVDNI 267

Query: 156 IAEGYPVAQMLSQIFEVVIEA-HDLQDEQKAKICKKLAEADK 193
           +AEGYP +Q+++Q+F++V EA  D+ D QKAKICK LAE DK
Sbjct: 268 VAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 309

BLAST of Carg00317 vs. TAIR10
Match: AT1G63160.1 (replication factor C 2)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-09
Identity = 48/180 (26.67%), Postives = 86/180 (47.78%), Query Frame = 0

Query: 41  RIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQGDLRRAITY 100
           +IIEP+ SRCA  RF  LS++ +  R+L +   E +    E L  +   + GD+R+A+  
Sbjct: 155 KIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNN 214

Query: 101 LQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQ 160
           LQ+    F S ++ +++  V        V  +        FD+A   +  +   GY    
Sbjct: 215 LQATFSGF-SFVNQENVFKVCDQPHPLHVKNIVRNVLESKFDIACDGLKQLYDLGYSPTD 274

Query: 161 MLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQL------LDVVSQTMQA 215
           +++ +F  +I+ +D+ +  K +  K+   A   + DG   YLQL      L +V +T +A
Sbjct: 275 IITTLFR-IIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKA 332

BLAST of Carg00317 vs. TAIR10
Match: AT1G77470.1 (replication factor C subunit 3)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-07
Identity = 46/194 (23.71%), Postives = 92/194 (47.42%), Query Frame = 0

Query: 38  HFCRIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQGDLRRA 97
           H  +II  L SRC +FRF PL    M +R+ H+   E L + +  L+ L  +S GD+R+A
Sbjct: 177 HVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKA 236

Query: 98  ITYLQSAARLFGSSISSKDL--------------ISVSGIIPREVVDELFAACKSGNFDL 157
           +  LQS      + ++SK++              +     +P++ ++++     +  FD 
Sbjct: 237 LNILQS------THMASKEITEEXXXXXXXXXVYLCTGNPLPKD-IEQISHWLLNKPFDE 296

Query: 158 ANKEVNNV-IAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYL 217
             K+V+ +   +G  +  ++ +I   + +   +    + ++   LA+ +  L  G ++ L
Sbjct: 297 CYKDVSEIKTRKGLAIVDIVKEITLFIFKI-KMPSAVRVQLINDLADIEYRLSFGCNDKL 356

BLAST of Carg00317 vs. TAIR10
Match: AT5G22010.1 (replication factor C1)

HSP 1 Score: 43.9 bits (102), Expect = 1.5e-04
Identity = 31/105 (29.52%), Postives = 53/105 (50.48%), Query Frame = 0

Query: 35  CFFHFCRIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQGDL 94
           C   + + ++ L + C    ++  +++ M KR++HI+  EGL ++E AL  L+    GD+
Sbjct: 506 CNDRYSQKLKSLVNYCLPLNYRKPTKQQMAKRLMHIAKAEGLEINEIALEELAERVNGDI 565

Query: 95  RRAITYLQ----SAARLFGSSISSKDLISV--SGIIPREVVDELF 134
           R A+  LQ    S + +    I  + L S     I P   VD+LF
Sbjct: 566 RLAVNQLQYMSLSMSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 610

BLAST of Carg00317 vs. Swiss-Prot
Match: sp|Q9FXM3|RFC2_ORYSJ (Replication factor C subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC2 PE=2 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 3.6e-72
Identity = 140/184 (76.09%), Postives = 159/184 (86.41%), Query Frame = 0

Query: 36  FFHFC----RIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQ 95
           FF  C    RIIEPLASRCAKFRFKPLSEEVM  RILHI NEEGLSLD +AL+TLS+IS 
Sbjct: 147 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDAQALATLSTISN 206

Query: 96  GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNV 155
           GDLRRAITYLQSAARLFGSSISS DLISVSG IP +VV  L A+CKSG FD+ANKEVNN+
Sbjct: 207 GDLRRAITYLQSAARLFGSSISSTDLISVSGAIPEDVVKSLLASCKSGEFDVANKEVNNI 266

Query: 156 IAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQT 215
           IA+GYPV+Q++SQ  +V++ A D+ DEQKA+ICKKL EADKCLVDGADEYLQLLDV S+T
Sbjct: 267 IADGYPVSQLISQFLDVIVNADDIPDEQKARICKKLGEADKCLVDGADEYLQLLDVASET 326

BLAST of Carg00317 vs. Swiss-Prot
Match: sp|Q93ZX1|RFC4_ARATH (Replication factor C subunit 4 OS=Arabidopsis thaliana OX=3702 GN=RFC4 PE=2 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 4.8e-69
Identity = 139/190 (73.16%), Postives = 161/190 (84.74%), Query Frame = 0

Query: 36  FFHFC----RIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQ 95
           FF  C    RIIEPLASRCAKFRFKPLSEEVM  RILHI NEEGLSLD EALSTLSSISQ
Sbjct: 148 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQ 207

Query: 96  GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNV 155
           GDLRRAITYLQSA RLFGS+I+S DL++VSG++P EVV++LF ACKSG+FD+ANKEV+N+
Sbjct: 208 GDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIANKEVDNI 267

Query: 156 IAEGYPVAQMLSQIFEVVIEA-HDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQ 215
           +AEGYP +Q+++Q+F++V EA  D+ D QKAKICK LAE DK LVDGADEYLQLLDV S 
Sbjct: 268 VAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKRLVDGADEYLQLLDVASS 327

Query: 216 TMQALSSSMQ 221
           T+ ALS   Q
Sbjct: 328 TICALSEMAQ 337

BLAST of Carg00317 vs. Swiss-Prot
Match: sp|P35249|RFC4_HUMAN (Replication factor C subunit 4 OS=Homo sapiens OX=9606 GN=RFC4 PE=1 SV=2)

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-42
Identity = 90/194 (46.39%), Postives = 138/194 (71.13%), Query Frame = 0

Query: 28  EAKLSSQCFF--HFCRIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALST 87
           E+K +  C    +  RIIEPL SRC+KFRFKPLS+++  +R+L I+ +E + + +E ++ 
Sbjct: 170 ESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAY 229

Query: 88  LSSISQGDLRRAITYLQSAARLF-GSSISSKDLISVSGIIPREVVDELFAACKSGNFDLA 147
           L  +S+GDLR+AIT+LQSA RL  G  I+ K +  ++G+IP E +D +FAAC+SG+FD  
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKL 289

Query: 148 NKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQL 207
              V ++I EG+   Q+++Q+ +VV+E ++L D+QK+ I +KLAE DKCL DGADE+LQL
Sbjct: 290 EAVVKDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQL 349

Query: 208 LDVVSQTMQALSSS 219
           + + +  MQ LS +
Sbjct: 350 ISLCATVMQQLSQN 362

BLAST of Carg00317 vs. Swiss-Prot
Match: sp|Q99J62|RFC4_MOUSE (Replication factor C subunit 4 OS=Mus musculus OX=10090 GN=Rfc4 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.6e-42
Identity = 88/194 (45.36%), Postives = 133/194 (68.56%), Query Frame = 0

Query: 28  EAKLSSQCFF--HFCRIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALST 87
           E+K +  C    +  RIIEPL SRC+KFRFKPLS+++  +R+L I+ +E + +  E ++ 
Sbjct: 170 ESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAY 229

Query: 88  LSSISQGDLRRAITYLQSAARLFGSSISSKDLIS-VSGIIPREVVDELFAACKSGNFDLA 147
           L  IS+GDLR+AIT+LQSA RL G    S+D+I+ ++G+IP   +D +F AC SG+FD  
Sbjct: 230 LVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKL 289

Query: 148 NKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQL 207
              V N+I EG+   Q+++Q+ + +IE  +L D+ K+ I +KLAE DKCL DGADE+LQL
Sbjct: 290 EAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKCLADGADEHLQL 349

Query: 208 LDVVSQTMQALSSS 219
           + + +  MQ L+ +
Sbjct: 350 MSLCATVMQQLTQN 363

BLAST of Carg00317 vs. Swiss-Prot
Match: sp|Q54MD4|RFC4_DICDI (Probable replication factor C subunit 4 OS=Dictyostelium discoideum OX=44689 GN=rfc4 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.5e-38
Identity = 76/181 (41.99%), Postives = 119/181 (65.75%), Query Frame = 0

Query: 38  HFCRIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQGDLRRA 97
           +  RII+PLASRCAKFRFKPL      +R+  IS +EG+  +E     +  +S GD+R+A
Sbjct: 155 YISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQEGIKCEESVYQAIQVVSNGDMRKA 214

Query: 98  ITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNVIAEGYP 157
           ITYLQSA R F + IS   + +++G +P +++ +L   CK  +FD     V ++IA+GYP
Sbjct: 215 ITYLQSAFRFFANKISEDVIYNIAGSLPPQLIKQLVDCCKKNSFDRLQSMVQSIIAQGYP 274

Query: 158 VAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQTMQALSS 217
           V+Q++SQ+F+ V+   DL   QK+ I  K+   D+ L+DG++E+LQL D+ S  M+ L++
Sbjct: 275 VSQVISQLFDYVLTTKDLNQSQKSHITMKIGNVDRNLIDGSEEFLQLFDLSSYIMKQLNN 334

Query: 218 S 219
           +
Sbjct: 335 N 335

BLAST of Carg00317 vs. TrEMBL
Match: tr|A0A1S3B9T6|A0A1S3B9T6_CUCME (LOW QUALITY PROTEIN: replication factor C subunit 4 OS=Cucumis melo OX=3656 GN=LOC103487609 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.1e-81
Identity = 167/184 (90.76%), Postives = 174/184 (94.57%), Query Frame = 0

Query: 38  HFCRIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQGDLRRA 97
           +  RIIEPLASRCAKFRFKPLSEEVM KRILHISNEEGLSLD EALSTLSS+SQGDLRRA
Sbjct: 154 YISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLSSMSQGDLRRA 213

Query: 98  ITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNVIAEGYP 157
           ITYLQSAARLFGSSISSKDL++VSGIIPREVVD LF ACKSGNFD ANKEVNNV+AEGYP
Sbjct: 214 ITYLQSAARLFGSSISSKDLVNVSGIIPREVVDALFTACKSGNFDTANKEVNNVLAEGYP 273

Query: 158 VAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQTMQALSS 217
           VAQMLSQIFEVVIE +DLQDEQKA+ICKKLAEADKCLVDGADEYLQLLDVVSQTMQAL  
Sbjct: 274 VAQMLSQIFEVVIEDNDLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQTMQAL-R 333

Query: 218 SMQL 222
           SMQL
Sbjct: 334 SMQL 336

BLAST of Carg00317 vs. TrEMBL
Match: tr|A0A0A0KYI8|A0A0A0KYI8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G361280 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.6e-80
Identity = 164/186 (88.17%), Postives = 171/186 (91.94%), Query Frame = 0

Query: 36  FFHFC----RIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQ 95
           FF  C    RIIEPLASRCAKFRFKPLSEEVM KRILHI NEEGLSLD EALSTLSSISQ
Sbjct: 148 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNEEGLSLDGEALSTLSSISQ 207

Query: 96  GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNV 155
           GDLRRAITYLQSAARLFGSSISSKDL++VSGIIP+EVVD LF ACKSGNFD ANK+VNNV
Sbjct: 208 GDLRRAITYLQSAARLFGSSISSKDLVNVSGIIPQEVVDALFVACKSGNFDTANKKVNNV 267

Query: 156 IAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQT 215
           +AEGYPVAQMLSQIFEVVIE +DLQDEQKA+ICKKLAEADKCLVDGADEYLQLLDVVSQT
Sbjct: 268 LAEGYPVAQMLSQIFEVVIEDNDLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQT 327

Query: 216 MQALSS 218
           MQ L S
Sbjct: 328 MQVLRS 333

BLAST of Carg00317 vs. TrEMBL
Match: tr|M1A641|M1A641_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102583635 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.2e-75
Identity = 151/189 (79.89%), Postives = 169/189 (89.42%), Query Frame = 0

Query: 36  FFHFC----RIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQ 95
           FF  C    RIIEPLASRCAKFRFKPL EEVMG RILHI  EEGL+LD EALSTLSSISQ
Sbjct: 147 FFFICNYISRIIEPLASRCAKFRFKPLPEEVMGSRILHICKEEGLNLDSEALSTLSSISQ 206

Query: 96  GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNV 155
           GDLRRAITYLQSAARLFGSSIS+K+LISVSG+IP EVV  +F+AC+SGNFDLANKEVNNV
Sbjct: 207 GDLRRAITYLQSAARLFGSSISAKELISVSGVIPNEVVQAMFSACRSGNFDLANKEVNNV 266

Query: 156 IAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQT 215
           IAEGYPV+QMLSQ++++V++A D+ DEQKA+ICKK AEADKCLVDGADEYLQLL+VVS T
Sbjct: 267 IAEGYPVSQMLSQLYDIVVDADDISDEQKARICKKFAEADKCLVDGADEYLQLLNVVSST 326

Query: 216 MQALSSSMQ 221
           MQALS+  Q
Sbjct: 327 MQALSNMPQ 335

BLAST of Carg00317 vs. TrEMBL
Match: tr|A0A2G2WYH3|A0A2G2WYH3_CAPBA (Replication factor C subunit 4 (Fragment) OS=Capsicum baccatum OX=33114 GN=CQW23_09997 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 3.3e-75
Identity = 149/189 (78.84%), Postives = 169/189 (89.42%), Query Frame = 0

Query: 36  FFHFC----RIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQ 95
           FF  C    RIIEPLASRCAKFRFKPL+EE+MG RILHI  EEGL+LD EALSTLSSISQ
Sbjct: 132 FFFICNYISRIIEPLASRCAKFRFKPLTEEIMGSRILHICKEEGLNLDSEALSTLSSISQ 191

Query: 96  GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNV 155
           GDLRRAITYLQSAARLFGSSIS+KDLISVSG+IP EVV  +F+AC+SGNFDLANKEVNNV
Sbjct: 192 GDLRRAITYLQSAARLFGSSISAKDLISVSGVIPNEVVQAIFSACRSGNFDLANKEVNNV 251

Query: 156 IAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQT 215
           IAEGYPV+QMLSQ++++V++A ++ DEQKA+ICKK AEADKCLVDGADEYLQLL+V S T
Sbjct: 252 IAEGYPVSQMLSQLYDIVVDADNISDEQKARICKKFAEADKCLVDGADEYLQLLNVASST 311

Query: 216 MQALSSSMQ 221
           MQALS+  Q
Sbjct: 312 MQALSNMPQ 320

BLAST of Carg00317 vs. TrEMBL
Match: tr|W9QYZ5|W9QYZ5_9ROSA (Replication factor C subunit 4 OS=Morus notabilis OX=981085 GN=L484_013384 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 4.4e-75
Identity = 151/184 (82.07%), Postives = 165/184 (89.67%), Query Frame = 0

Query: 36  FFHFC----RIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQ 95
           FF  C    RIIEPLASRCAKFRFKPLSEE+M  RIL+I NEEGL+LD EALSTLSSISQ
Sbjct: 117 FFFICNYISRIIEPLASRCAKFRFKPLSEEIMTSRILYICNEEGLNLDAEALSTLSSISQ 176

Query: 96  GDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNV 155
           GDLRRAITYLQSAARLFGSSISSKDLISVSG+IP+E V+ LFAACKSGNFDLANKEVNNV
Sbjct: 177 GDLRRAITYLQSAARLFGSSISSKDLISVSGVIPQEFVEALFAACKSGNFDLANKEVNNV 236

Query: 156 IAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQT 215
           IAEGYPV+QM SQ+F+V++EA DL DEQKA+IC+KL EADKCLVDGADEYLQLLDV   T
Sbjct: 237 IAEGYPVSQMFSQLFDVIVEADDLSDEQKARICRKLGEADKCLVDGADEYLQLLDVSGNT 296

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022940132.12.1e-8995.79replication factor C subunit 4 [Cucurbita moschata][more]
XP_022981026.11.8e-8895.26replication factor C subunit 4 [Cucurbita maxima][more]
XP_023523758.11.8e-8895.26replication factor C subunit 4 [Cucurbita pepo subsp. pepo][more]
XP_008444196.11.6e-8190.76PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 4 [Cucumis melo][more]
XP_022134048.11.8e-8089.42replication factor C subunit 4 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT1G21690.31.1e-6073.46ATPase family associated with various cellular activities (AAA) [more]
AT1G63160.12.6e-0926.67replication factor C 2[more]
AT1G77470.12.5e-0723.71replication factor C subunit 3[more]
AT5G22010.11.5e-0429.52replication factor C1[more]
Match NameE-valueIdentityDescription
sp|Q9FXM3|RFC2_ORYSJ3.6e-7276.09Replication factor C subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC2 ... [more]
sp|Q93ZX1|RFC4_ARATH4.8e-6973.16Replication factor C subunit 4 OS=Arabidopsis thaliana OX=3702 GN=RFC4 PE=2 SV=1[more]
sp|P35249|RFC4_HUMAN1.3e-4246.39Replication factor C subunit 4 OS=Homo sapiens OX=9606 GN=RFC4 PE=1 SV=2[more]
sp|Q99J62|RFC4_MOUSE6.6e-4245.36Replication factor C subunit 4 OS=Mus musculus OX=10090 GN=Rfc4 PE=1 SV=1[more]
sp|Q54MD4|RFC4_DICDI7.5e-3841.99Probable replication factor C subunit 4 OS=Dictyostelium discoideum OX=44689 GN=... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3B9T6|A0A1S3B9T6_CUCME1.1e-8190.76LOW QUALITY PROTEIN: replication factor C subunit 4 OS=Cucumis melo OX=3656 GN=L... [more]
tr|A0A0A0KYI8|A0A0A0KYI8_CUCSA1.6e-8088.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G361280 PE=4 SV=1[more]
tr|M1A641|M1A641_SOLTU1.2e-7579.89Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102583635 PE=4 SV=1[more]
tr|A0A2G2WYH3|A0A2G2WYH3_CAPBA3.3e-7578.84Replication factor C subunit 4 (Fragment) OS=Capsicum baccatum OX=33114 GN=CQW23... [more]
tr|W9QYZ5|W9QYZ5_9ROSA4.4e-7582.07Replication factor C subunit 4 OS=Morus notabilis OX=981085 GN=L484_013384 PE=4 ... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR008921DNA_pol3_clamp-load_cplx_C
IPR013748Rep_factorC_C
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00317-RACarg00317-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.10.8.60coord: 58..123
e-value: 1.0E-16
score: 61.8
NoneNo IPR availableGENE3DG3DSA:1.20.272.10coord: 124..214
e-value: 1.0E-32
score: 114.3
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 40..215
NoneNo IPR availablePANTHERPTHR11669:SF20REPLICATION FACTOR C SUBUNIT 4coord: 40..215
IPR013748Replication factor C, C-terminalPFAMPF08542Rep_fac_Ccoord: 125..209
e-value: 5.7E-22
score: 77.8
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILYSSF48019post-AAA+ oligomerization domain-likecoord: 124..210
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILYSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 41..105