Carg00294 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00294
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	carbon catabolite repressor protein 4 homolog 4
Location	Cucurbita_argyrosperma_scaffold_001 : 1612727 .. 1614453 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTCTTCTTTTTACGTTCTATACTGCCAGAAATATCATACGTAACATGAGTACAGTACAATCACCAAAGCATCCGAAGTTTATTTCCGAGGAAGGGGCTGACATTTACTCTAGAAGTAAACCTGATGGTATGTTTTTCCCCTCGTTTTGATGGAAGGGAAATGACAATTTTGATAGGCTATGTTCGTGTTTTCTTGCTCTGGATTTGTCCATTTGGCCATATTAGACTTGTTCATTTTTATCATTCGACCAAACTTGAACAATTTGAAATGATTTTTAAAACAAATAAAGAACTTTCAGACGTTCTTATTACTGAAAATTGAGAAACAATATAGGTGTTTTATATGACTTCACTCATCATCTAAGCACGGCTTTCTATATTGCTACTGCAGGTATCAGATTTCGTTTTGTTTCTTACAAGCCAGGTAGGCAACACATTTCCGATTCATTTCATTCTTCATTCTTCATTCTTAAGTTTAGTTTTATGCTTCTTTCCGTTCAATAATGTTGTTTGCTGCAAAACATCTTGTTCGGTCAGGAATATATAAGCAAAAGTGGATTGCCGTAGCAAAAATGTAATAGAATATTAGCGATAGGACATTTCTAAACACATTGAATATAATTCATCCTTATTGATGATTTGGGATTCTACTATTATAACTTGTTTGTATACTATTAAAATTATTGAATATAATTCATCCTTCTTGATGATTTTGGATTCTACATTTGATAAAAACTGTAAACCATAGATAAGGTTGATAGCTGTTTCGTAAGATGTCAATGTATTGAAATTGGATTCAGGTGTGGTTTTAGTTTTTCTGTTCAATAGAATTCAGAAATCTGATTTAACACATCTATATATAATGGTAATGGCTATAAAATTAGCTATAAATCTAAACCAATAAGTCCTGTGAAAATATTACCGGGTCAGTTATGTTGCACTACACAGGATATTATGTTGGAATTTGTTGTAAATTGTCATAAGTTTTTTATTTAATTAGTTATTAACCAGTTGATTAAATAAGAATATTATTAATTTGGTTTTTAATTTTGTAACCATTTTAATATTAATCTTATTTAATTCCATAACGTTTCATGATTCAAACAATTGTCCCTATATAATGGGCTTGTTGATATCGGAATTTGACATCGGAATTGATATCAAAGTTTGAGTGAGTTTTGTGTGTCACATTGTATTTCTTGAGTGACATATTGGTGAGAGTCTTTGTAGTGTGATAGTGAAGTATTCACTTGTAACACTTCGATTATTAGTGATTGGTTGCTACCCGTGGATGTTGGGGAACTTTTTCTCTCTGAACCACGTAAATATCTTGGTGTCTCTTTGTGTAATTCCGTTTATTGGTGTTGTGAGTACATTTGTTCCGCTTTTGGCGCACAACAGAATTATGCCTGCTTTCAAACTCAAGAAGCCTTTTCATCATGTTGTAATTGTAGCAAACACCCATCTTTACTGGTAAAATTTTATTTTCTAGGTTTAAGGCTATACAGTCGCTTATAGGGCCTGTTGTATTGAAGAACATCTTATCCCTCCAATTTGTAAAGAATTGATATTTATTACAGGGATCCAGAATGAGCTGATGACAAGCTTGCCAAGGCCAAATAGCTTTTATCACGCCTAGCTCGATTCAAGACATCAGTGTCTGAAAGGTTTGAATGCACACCCTCAGTACCTTTGGCTGGTGACTTCAATTCAAACCCTGGGGAC

mRNA sequence

TTTTTCTTCTTTTTACGTTCTATACTGCCAGAAATATCATACGTAACATGAGTACAGTACAATCACCAAAGCATCCGAAGTTTATTTCCGAGGAAGGGGCTGACATTTACTCTAGAAGTAAACCTGATGCTCGATTCAAGACATCAGTGTCTGAAAGGTTTGAATGCACACCCTCAGTACCTTTGGCTGGTGACTTCAATTCAAACCCTGGGGAC

Coding sequence (CDS)

ATGAGTACAGTACAATCACCAAAGCATCCGAAGTTTATTTCCGAGGAAGGGGCTGACATTTACTCTAGAAGTAAACCTGATGCTCGATTCAAGACATCAGTGTCTGAAAGGTTTGAATGCACACCCTCAGTACCTTTGGCTGGTGACTTCAATTCAAACCCTGGGGAC

Protein sequence

MSTVQSPKHPKFISEEGADIYSRSKPDARFKTSVSERFECTPSVPLAGDFNSNPGD

Homology

[Close]

BLAST of Carg00294 vs. NCBI nr
Match: XP_022981749.1 (uncharacterized protein LOC111480806 isoform X2 [Cucurbita maxima])

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 45/79 (56.96%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 1  MSTVQSPKHPKFISEEGADIYSRSKPD--------------------------------- 47
          MSTVQSPKHPKFISEEGADIYSRSKPD                                 
Sbjct: 1  MSTVQSPKHPKFISEEGADIYSRSKPDGIRFRFVSYNILARDPEWADDKLAKAKLLLSCL 60

[Close]

BLAST of Carg00294 vs. NCBI nr
Match: XP_022981748.1 (uncharacterized protein LOC111480806 isoform X1 [Cucurbita maxima])

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 45/79 (56.96%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 1  MSTVQSPKHPKFISEEGADIYSRSKPD--------------------------------- 47
          MSTVQSPKHPKFISEEGADIYSRSKPD                                 
Sbjct: 11 MSTVQSPKHPKFISEEGADIYSRSKPDGIRFRFVSYNILARDPEWADDKLAKAKLLLSCL 70

[Close]

BLAST of Carg00294 vs. NCBI nr
Match: KHN41755.1 (Carbon catabolite repressor protein 4 like 4 [Glycine soja])

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-08
Identity = 36/75 (48.00%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 6  SPKHPKFISEEGADIYSRSKPD------------------------ARFKTSVSERFECT 57
          SP  PKF+S EGADI+SR+KPD                        A+FKT +S+R+EC 
Sbjct: 5  SPAFPKFVSVEGADIHSRTKPDDSFFQDPDWADVKLAQAKYLLSRIAKFKTLISDRYECI 64

[Close]

BLAST of Carg00294 vs. NCBI nr
Match: XP_022936761.1 (carbon catabolite repressor protein 4 homolog 4 isoform X1 [Cucurbita moschata])

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-04
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 28  ARFKTSVSERFECTPSVPLAGDFNSNPGD 57
           ARFKT VSE+FECTPS+ LAGDFNS PGD
Sbjct: 260 ARFKTLVSEKFECTPSILLAGDFNSTPGD 288

HSP 2 Score: 47.8 bits (112), Expect = 1.4e-02
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1  MSTVQSPKHPKFISEEGADIYSRSKPDA-RFK 32
          M+ VQ+PKHPKFIS EGADIYSRSK D  RF+
Sbjct: 24 MTGVQAPKHPKFISVEGADIYSRSKSDGIRFR 55

[Close]

BLAST of Carg00294 vs. NCBI nr
Match: XP_022936762.1 (carbon catabolite repressor protein 4 homolog 4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-04
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 28  ARFKTSVSERFECTPSVPLAGDFNSNPGD 57
           ARFKT VSE+FECTPS+ LAGDFNS PGD
Sbjct: 237 ARFKTLVSEKFECTPSILLAGDFNSTPGD 265

HSP 2 Score: 47.8 bits (112), Expect = 1.4e-02
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1  MSTVQSPKHPKFISEEGADIYSRSKPDA-RFK 32
          M+ VQ+PKHPKFIS EGADIYSRSK D  RF+
Sbjct: 1  MTGVQAPKHPKFISVEGADIYSRSKSDGIRFR 32

[Close]

BLAST of Carg00294 vs. TAIR10
Match: AT1G31500.4 (DNAse I-like superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 1.5e-06
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 28  ARFKTSVSERFECTPSVPLAGDFNSNPGD 57
           A+FKT +S+ FECTPS+ LAGDFNS PGD
Sbjct: 287 AQFKTLISDEFECTPSLLLAGDFNSIPGD 315

[Close]

BLAST of Carg00294 vs. Swiss-Prot
Match: sp|A8MS41|CCR4D_ARATH (Carbon catabolite repressor protein 4 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=CCR4-4 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.8e-05
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 28  ARFKTSVSERFECTPSVPLAGDFNSNPGD 57
           A+FKT +S+ FECTPS+ LAGDFNS PGD
Sbjct: 287 AQFKTLISDEFECTPSLLLAGDFNSIPGD 315

[Close]

BLAST of Carg00294 vs. TrEMBL
Match: tr|A0A0A0L0V7|A0A0A0L0V7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G669220 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.1e-04
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 28  ARFKTSVSERFECTPSVPLAGDFNSNPGD 57
           ARFK+ V+E+FECTPSV LAGDFNS PGD
Sbjct: 271 ARFKSLVAEKFECTPSVLLAGDFNSTPGD 299

[Close]

BLAST of Carg00294 vs. TrEMBL
Match: tr|A0A1S3B9X8|A0A1S3B9X8_CUCME (carbon catabolite repressor protein 4 homolog 4 OS=Cucumis melo OX=3656 GN=LOC103487637 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.6e-04
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 28  ARFKTSVSERFECTPSVPLAGDFNSNPGD 57
           ARFK+ V+E+FECTPS+ LAGDFNS PGD
Sbjct: 261 ARFKSLVAEKFECTPSILLAGDFNSTPGD 289

HSP 2 Score: 50.8 bits (120), Expect = 1.1e-03
Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1  MSTVQSPKHPKFISEEGADIYSRSKPDA-RFK 32
          MS VQSPKHPKFIS EGADIYSRSK D  RF+
Sbjct: 25 MSAVQSPKHPKFISVEGADIYSRSKSDGIRFR 56

[Close]

BLAST of Carg00294 vs. TrEMBL
Match: tr|A0A1J3GKS7|A0A1J3GKS7_NOCCA (Carbon catabolite repressor protein 4-like protein 4 (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR6638_c0_g1_i1_g.22391 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.7e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 28  ARFKTSVSERFECTPSVPLAGDFNSNPGD 57
           ARFKT +SE FECTPS+ LAGDFNS PGD
Sbjct: 261 ARFKTLISEEFECTPSLLLAGDFNSIPGD 289

[Close]

BLAST of Carg00294 vs. TrEMBL
Match: tr|A0A1J3JZQ4|A0A1J3JZQ4_NOCCA (Carbon catabolite repressor protein 4-like protein 4 OS=Noccaea caerulescens OX=107243 GN=MP_TR16274_c0_g1_i1_g.46262 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.7e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 28  ARFKTSVSERFECTPSVPLAGDFNSNPGD 57
           ARFKT +SE FECTPS+ LAGDFNS PGD
Sbjct: 113 ARFKTLISEEFECTPSLLLAGDFNSIPGD 141

The following BLAST results are available for this feature:

BLAST of Carg00294 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022981749.1	1.3e-11	56.96	uncharacterized protein LOC111480806 isoform X2 [Cucurbita maxima]	[more]
XP_022981748.1	1.3e-11	56.96	uncharacterized protein LOC111480806 isoform X1 [Cucurbita maxima]	[more]
KHN41755.1	2.3e-08	48.00	Carbon catabolite repressor protein 4 like 4 [Glycine soja]	[more]
XP_022936761.1	1.5e-04	82.76	carbon catabolite repressor protein 4 homolog 4 isoform X1 [Cucurbita moschata]	[more]
XP_022936762.1	1.5e-04	82.76	carbon catabolite repressor protein 4 homolog 4 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg00294 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31500.4	1.5e-06	72.41	DNAse I-like superfamily protein	[more]

BLAST of Carg00294 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A8MS41\|CCR4D_ARATH	2.8e-05	72.41	Carbon catabolite repressor protein 4 homolog 4 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg00294 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0V7\|A0A0A0L0V7_CUCSA	5.1e-04	79.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G669220 PE=4 SV=1	[more]
tr\|A0A1S3B9X8\|A0A1S3B9X8_CUCME	6.6e-04	75.86	carbon catabolite repressor protein 4 homolog 4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1J3GKS7\|A0A1J3GKS7_NOCCA	8.7e-04	79.31	Carbon catabolite repressor protein 4-like protein 4 (Fragment) OS=Noccaea caeru...	[more]
tr\|A0A1J3JZQ4\|A0A1J3JZQ4_NOCCA	8.7e-04	79.31	Carbon catabolite repressor protein 4-like protein 4 OS=Noccaea caerulescens OX=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00294-RA	Carg00294-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00294	Cp4.1LG02g02960	Cucurbita pepo (Zucchini)	carcpeB0943

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00294	Silver-seed gourd	carcarB574
Carg00294	Cucurbita maxima (Rimu)	carcmaB0932
Carg00294	Cucurbita maxima (Rimu)	carcmaB0947
Carg00294	Cucurbita moschata (Rifu)	carcmoB0906
Carg00294	Cucurbita moschata (Rifu)	carcmoB0922
Carg00294	Cucurbita pepo (Zucchini)	carcpeB0947
Carg00294	Bottle gourd (USVL1VR-Ls)	carlsiB612
Carg00294	Melon (DHL92) v3.5.1	carmeB0673
Carg00294	Melon (DHL92) v3.6.1	carmedB0685
Carg00294	Watermelon (Charleston Gray)	carwcgB0647
Carg00294	Watermelon (97103) v1	carwmB0672
Carg00294	Watermelon (97103) v2	carwmbB0692