Carg00280 (gene) Silver-seed gourd

Overview
NameCarg00280
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionzinc finger protein ZAT12-like
LocationCucurbita_argyrosperma_scaffold_001 : 1518676 .. 1519194 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAACTGCTTGATGCTACTTTCTCGTAGCAGCGCGTCCACTACTACAGATTTCGAATCGTCTTTGTCGTCTTCACCGAATCGTGTTTTCGAGTGCAAGACGTGCAATCGGCAGTTTCCGTCGTTTCAGGCCCTAGGCGGCCACCGCGCCAGTCACAAGAAGCCGCGAATTGTAGGACCAGACGGCGGAAACTCCGATGGATCTTCATCGCAAGGATCTCCAACCAAGCCGAAGACGCATGAGTGCAGTATCTGTGGATTGGAATTCGCGATTGGTCAAGCGCTTGGTGGACATATGAGGAGACATAGAGCTACGACGCTGTTGACCGATCACGCTCGACTTACAAATCATCCGAGTAGTTTATCTCAGCCGCCGCGTTCTCAACCGCCTGTGGTGAAGAAGACGAACGGCGGTGGAAGGATTCTATGCTTGGATCTGAATTTGACTCCGTCCGAGAACGATAAACAGTTTCTTCAGCTTGGAAAGAGTATTTCCATGGTTGATTGTTTCTTCTGA

mRNA sequence

ATGGCGAACTGCTTGATGCTACTTTCTCGTAGCAGCGCGTCCACTACTACAGATTTCGAATCGTCTTTGTCGTCTTCACCGAATCGTGTTTTCGAGTGCAAGACGTGCAATCGGCAGTTTCCGTCGTTTCAGGCCCTAGGCGGCCACCGCGCCAGTCACAAGAAGCCGCGAATTGTAGGACCAGACGGCGGAAACTCCGATGGATCTTCATCGCAAGGATCTCCAACCAAGCCGAAGACGCATGAGTGCAGTATCTGTGGATTGGAATTCGCGATTGGTCAAGCGCTTGGTGGACATATGAGGAGACATAGAGCTACGACGCTGTTGACCGATCACGCTCGACTTACAAATCATCCGAGTAGTTTATCTCAGCCGCCGCGTTCTCAACCGCCTGTGGTGAAGAAGACGAACGGCGGTGGAAGGATTCTATGCTTGGATCTGAATTTGACTCCGTCCGAGAACGATAAACAGTTTCTTCAGCTTGGAAAGAGTATTTCCATGGTTGATTGTTTCTTCTGA

Coding sequence (CDS)

ATGGCGAACTGCTTGATGCTACTTTCTCGTAGCAGCGCGTCCACTACTACAGATTTCGAATCGTCTTTGTCGTCTTCACCGAATCGTGTTTTCGAGTGCAAGACGTGCAATCGGCAGTTTCCGTCGTTTCAGGCCCTAGGCGGCCACCGCGCCAGTCACAAGAAGCCGCGAATTGTAGGACCAGACGGCGGAAACTCCGATGGATCTTCATCGCAAGGATCTCCAACCAAGCCGAAGACGCATGAGTGCAGTATCTGTGGATTGGAATTCGCGATTGGTCAAGCGCTTGGTGGACATATGAGGAGACATAGAGCTACGACGCTGTTGACCGATCACGCTCGACTTACAAATCATCCGAGTAGTTTATCTCAGCCGCCGCGTTCTCAACCGCCTGTGGTGAAGAAGACGAACGGCGGTGGAAGGATTCTATGCTTGGATCTGAATTTGACTCCGTCCGAGAACGATAAACAGTTTCTTCAGCTTGGAAAGAGTATTTCCATGGTTGATTGTTTCTTCTGA

Protein sequence

MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVGPDGGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPSSLSQPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCFF
Homology
[Close]
BLAST of Carg00280 vs. NCBI nr
Match: XP_023545353.1 (zinc finger protein ZAT12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.1 bits (645), Expect = 7.0e-64
Identity = 169/172 (98.26%), Postives = 169/172 (98.26%), Query Frame = 0 

Query: 1   MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 60
           MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG
Sbjct: 13  MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 72

Query: 61  PDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARLTNHPS 120
           PDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  HARLTNHPS
Sbjct: 73  PDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDHARLTNHPS 132

Query: 121 SLSQPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCFF 173
           SLS PPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCFF
Sbjct: 133 SLSHPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCFF 184

[Close]
BLAST of Carg00280 vs. NCBI nr
Match: XP_022995602.1 (zinc finger protein ZAT12-like [Cucurbita maxima])

HSP 1 Score: 251.5 bits (641), Expect = 2.0e-63
Identity = 168/172 (97.67%), Postives = 168/172 (97.67%), Query Frame = 0 

Query: 1   MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 60
           MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG
Sbjct: 13  MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 72

Query: 61  PDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARLTNHPS 120
           PDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  HARLTNHPS
Sbjct: 73  PDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDHARLTNHPS 132

Query: 121 SLSQPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCFF 173
           SLS PPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGK ISMVDCFF
Sbjct: 133 SLSHPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKGISMVDCFF 184

[Close]
BLAST of Carg00280 vs. NCBI nr
Match: XP_022957121.1 (zinc finger protein ZAT12-like [Cucurbita moschata])

HSP 1 Score: 237.7 bits (605), Expect = 3.0e-59
Identity = 162/172 (94.19%), Postives = 162/172 (94.19%), Query Frame = 0 

Query: 1   MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 60
           MANCLMLLSRSSAS TTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG
Sbjct: 13  MANCLMLLSRSSASNTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 72

Query: 61  PDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARLTNHPS 120
           PDGGNS      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  HARLTNHPS
Sbjct: 73  PDGGNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDHARLTNHPS 132

Query: 121 SLSQPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCFF 173
           SLS PPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCFF
Sbjct: 133 SLSHPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCFF 184

[Close]
BLAST of Carg00280 vs. NCBI nr
Match: XP_008461644.1 (PREDICTED: zinc finger protein ZAT12-like [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 3.7e-33
Identity = 123/172 (71.51%), Postives = 130/172 (75.58%), Query Frame = 0 

Query: 1   MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 60
           MANCLMLLSR++A+   +  S+ SSSPNRVFECKTCNRQF SFQALGGHRASHKKPRIVG
Sbjct: 13  MANCLMLLSRNTAADHFESSSTNSSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 72

Query: 61  PDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARLTNHPS 120
            DGGNSD     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      LTNHP 
Sbjct: 73  GDGGNSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNDARLLTNHPR 132

Query: 121 SLSQPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCFF 173
                                ILCLDLNLTPSEND +FLQLGKS+SMVDCFF
Sbjct: 133 XXXXXXXXXXXXXXXXXXXXXILCLDLNLTPSENDSRFLQLGKSVSMVDCFF 184

[Close]
BLAST of Carg00280 vs. NCBI nr
Match: XP_022985423.1 (zinc finger protein ZAT12-like [Cucurbita maxima])

HSP 1 Score: 150.6 bits (379), Expect = 4.9e-33
Identity = 126/175 (72.00%), Postives = 130/175 (74.29%), Query Frame = 0 

Query: 1   MANCLMLLSRSSASTTTDFESSLSS--SPNRVFECKTCNRQFPSFQALGGHRASHKKPRI 60
           MANCLMLLSRSSA+TT DFESS S   SPNRVFECKTCNRQFPSFQALGGHRASHKKPRI
Sbjct: 14  MANCLMLLSRSSATTTADFESSSSPSLSPNRVFECKTCNRQFPSFQALGGHRASHKKPRI 73

Query: 61  VGPDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARLT-- 120
              DGGNSDG+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      H RLT  
Sbjct: 74  ---DGGNSDGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTLLTDHGRLTXX 133

Query: 121 NHPSSLSQPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCF 172
                                   RILCLDLNLTPSEND +FLQLGKSISM+DCF
Sbjct: 134 XXXXXXXXXXXXXXXXXXXXXXXXRILCLDLNLTPSENDSKFLQLGKSISMLDCF 185

[Close]
BLAST of Carg00280 vs. TAIR10
Match: AT2G37430.1 (C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-14
Identity = 74/159 (46.54%), Postives = 93/159 (58.49%), Query Frame = 0 

Query: 1   MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 60
           +A CLM+L+++S            S  +  FECKTCN++F SFQALGGHRASHKKP++  
Sbjct: 17  IAKCLMILAQTSMVKQIGLNQHTESHTSNQFECKTCNKRFSSFQALGGHRASHKKPKL-- 76

Query: 61  PDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARLTNHPS 120
                    + +                XXXXXXXXXXXXXXXXXXXXXXX   +T  PS
Sbjct: 77  ---------TVEQKDVKHLSNDYKGNHFXXXXXXXXXXXXXXXXXXXXXXXXXSMTVEPS 136

Query: 121 SLSQPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFL 160
            +S P     PV+K+     RIL LDLNLTP END +++
Sbjct: 137 FIS-PMIPSMPVLKRCGSSKRILSLDLNLTPLENDLEYI 163

[Close]
BLAST of Carg00280 vs. TAIR10
Match: AT2G28710.1 (C2H2-type zinc finger family protein)

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-14
Identity = 90/168 (53.57%), Postives = 108/168 (64.29%), Query Frame = 0 

Query: 1   MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 60
           MANCL+LLS++  + T           +RVF CKTCN++FPSFQALGGHRASH++   + 
Sbjct: 14  MANCLILLSKAHQNDT----------KSRVFACKTCNKEFPSFQALGGHRASHRRSAAL- 73

Query: 61  PDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARLTNHPS 120
              G++  S  +     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    T    
Sbjct: 74  --EGHAPPSPKRVKPVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT---- 133

Query: 121 SLSQPPRSQPPVVKKTNGGG---RILCLDLNLTPSENDKQFLQLGKSI 166
                     PV  K +GGG   R+LCLDLNLTP EN+   L+LG+ I
Sbjct: 134 ---------APVTMKKSGGGNGKRVLCLDLNLTPLENEDLKLELGRFI 155

[Close]
BLAST of Carg00280 vs. TAIR10
Match: AT3G53600.1 (C2H2-type zinc finger family protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.9e-11
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 5  LMLLSRSSASTTTDFESSLSS--SPNRVFECKTCNRQFPSFQALGGHRASHKKPRIV 60
          LM+LSRS      D + S  S  + N  FECKTCNR+F SFQALGGHRASHKKP+++
Sbjct: 21 LMMLSRSFVVKQIDVKQSTGSKTNHNNHFECKTCNRKFDSFQALGGHRASHKKPKLI 77

[Close]
BLAST of Carg00280 vs. TAIR10
Match: AT5G59820.1 (C2H2-type zinc finger family protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.9e-11
Identity = 78/164 (47.56%), Postives = 92/164 (56.10%), Query Frame = 0 

Query: 2   ANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVGP 61
           ANCLMLLSR         E+       RVF CKTC +QF SFQALGGHRASHKKP     
Sbjct: 16  ANCLMLLSRVGQ------ENVDGGDQKRVFTCKTCLKQFHSFQALGGHRASHKKP----- 75

Query: 62  DGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARLTNHPSS 121
              N+D  SS            XXXXXXXXXXXXXXXXXXXXXXXXX      L      
Sbjct: 76  ---NNDALSSGLMKKVKTSSHPXXXXXXXXXXXXXXXXXXXXXXXXXGAAGGALVTR--- 135

Query: 122 LSQPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSI 166
            +  P      +KK++ G R+ CLDL+L   +N    L+LG+++
Sbjct: 136 -ALLPEPTVTTLKKSSSGKRVACLDLSLGMVDNLNLKLELGRTV 161

[Close]
BLAST of Carg00280 vs. TAIR10
Match: AT2G28200.1 (C2H2-type zinc finger family protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-10
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 1   MANCLMLLSRSSASTTTDFESSLS-----SSPNR---VFECKTCNRQFPSFQALGGHRAS 58
           MA CL++L+R +   + D ++S       SS N    V+ECKTCNR F SFQALGGHRAS
Sbjct: 77  MAICLIMLARGTVLPSPDLKNSRKIHQKISSENSSFYVYECKTCNRTFSSFQALGGHRAS 136

[Close]
BLAST of Carg00280 vs. Swiss-Prot
Match: sp|Q9SLD4|ZAT11_ARATH (Zinc finger protein ZAT11 OS=Arabidopsis thaliana OX=3702 GN=ZAT11 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-13
Identity = 74/159 (46.54%), Postives = 93/159 (58.49%), Query Frame = 0 

Query: 1   MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 60
           +A CLM+L+++S            S  +  FECKTCN++F SFQALGGHRASHKKP++  
Sbjct: 17  IAKCLMILAQTSMVKQIGLNQHTESHTSNQFECKTCNKRFSSFQALGGHRASHKKPKL-- 76

Query: 61  PDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARLTNHPS 120
                    + +                XXXXXXXXXXXXXXXXXXXXXXX   +T  PS
Sbjct: 77  ---------TVEQKDVKHLSNDYKGNHFXXXXXXXXXXXXXXXXXXXXXXXXXSMTVEPS 136

Query: 121 SLSQPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFL 160
            +S P     PV+K+     RIL LDLNLTP END +++
Sbjct: 137 FIS-PMIPSMPVLKRCGSSKRILSLDLNLTPLENDLEYI 163

[Close]
BLAST of Carg00280 vs. Swiss-Prot
Match: sp|Q42410|ZAT12_ARATH (Zinc finger protein ZAT12 OS=Arabidopsis thaliana OX=3702 GN=ZAT12 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.2e-10
Identity = 78/164 (47.56%), Postives = 92/164 (56.10%), Query Frame = 0 

Query: 2   ANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVGP 61
           ANCLMLLSR         E+       RVF CKTC +QF SFQALGGHRASHKKP     
Sbjct: 16  ANCLMLLSRVGQ------ENVDGGDQKRVFTCKTCLKQFHSFQALGGHRASHKKP----- 75

Query: 62  DGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARLTNHPSS 121
              N+D  SS            XXXXXXXXXXXXXXXXXXXXXXXXX      L      
Sbjct: 76  ---NNDALSSGLMKKVKTSSHPXXXXXXXXXXXXXXXXXXXXXXXXXGAAGGALVTR--- 135

Query: 122 LSQPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSI 166
            +  P      +KK++ G R+ CLDL+L   +N    L+LG+++
Sbjct: 136 -ALLPEPTVTTLKKSSSGKRVACLDLSLGMVDNLNLKLELGRTV 161

[Close]
BLAST of Carg00280 vs. Swiss-Prot
Match: sp|Q681X4|ZAT5_ARATH (Zinc finger protein ZAT5 OS=Arabidopsis thaliana OX=3702 GN=ZAT5 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-09
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 1   MANCLMLLSRSSASTTTDFESSLS-----SSPNR---VFECKTCNRQFPSFQALGGHRAS 58
           MA CL++L+R +   + D ++S       SS N    V+ECKTCNR F SFQALGGHRAS
Sbjct: 77  MAICLIMLARGTVLPSPDLKNSRKIHQKISSENSSFYVYECKTCNRTFSSFQALGGHRAS 136

[Close]
BLAST of Carg00280 vs. Swiss-Prot
Match: sp|Q42453|ZAT7_ARATH (Zinc finger protein ZAT7 OS=Arabidopsis thaliana OX=3702 GN=ZAT7 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 70/172 (40.70%), Postives = 84/172 (48.84%), Query Frame = 0 

Query: 2   ANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVGP 61
           A CLMLLSR                  RVF CKTC ++F SFQALGGHRASHKK  ++  
Sbjct: 17  AKCLMLLSRVGEC------GGGCGGDERVFRCKTCLKEFSSFQALGGHRASHKK--LINS 76

Query: 62  DGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARLTNHPSS 121
           D  +  GS S                         XXXXXXXXXXXXXXX     N   S
Sbjct: 77  DNPSLLGSLSN--------------KKTKTSHPCPXXXXXXXXXXXXXXXXXXXRNEKVS 136

Query: 122 LSQPPRSQPP------VVKKTNGGGRILCLDLNLTPSENDKQF-LQLGKSIS 167
            S   RS  P       +KK + G R+ CLDL+L   E+   + L+LG++IS
Sbjct: 137 GSLVTRSFLPETTTVTALKKFSSGKRVACLDLDLDSMESLVNWKLELGRTIS 166

[Close]
BLAST of Carg00280 vs. Swiss-Prot
Match: sp|Q9LX85|ZAT8_ARATH (Zinc finger protein ZAT8 OS=Arabidopsis thaliana OX=3702 GN=ZAT8 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-06
Identity = 30/54 (55.56%), Postives = 32/54 (59.26%), Query Frame = 0 

Query: 2  ANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKK 56
          A CLMLLSR                  RVF CKTC ++F SFQALGGHRASHKK
Sbjct: 16 AKCLMLLSRVGECG--------GGGEKRVFRCKTCLKEFSSFQALGGHRASHKK 61

[Close]
BLAST of Carg00280 vs. TrEMBL
Match: tr|A0A1S3CF73|A0A1S3CF73_CUCME (zinc finger protein ZAT12-like OS=Cucumis melo OX=3656 GN=LOC103500198 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.5e-33
Identity = 123/172 (71.51%), Postives = 130/172 (75.58%), Query Frame = 0 

Query: 1   MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 60
           MANCLMLLSR++A+   +  S+ SSSPNRVFECKTCNRQF SFQALGGHRASHKKPRIVG
Sbjct: 13  MANCLMLLSRNTAADHFESSSTNSSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 72

Query: 61  PDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARLTNHPS 120
            DGGNSD     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      LTNHP 
Sbjct: 73  GDGGNSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNDARLLTNHPR 132

Query: 121 SLSQPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCFF 173
                                ILCLDLNLTPSEND +FLQLGKS+SMVDCFF
Sbjct: 133 XXXXXXXXXXXXXXXXXXXXXILCLDLNLTPSENDSRFLQLGKSVSMVDCFF 184

[Close]
BLAST of Carg00280 vs. TrEMBL
Match: tr|A0A0A0KLU2|A0A0A0KLU2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180920 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.6e-32
Identity = 124/172 (72.09%), Postives = 128/172 (74.42%), Query Frame = 0 

Query: 1   MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 60
           MANCLMLLSR++A       S+ SSSPNRVFECKTCNRQF SFQALGGHRASHKKPRIVG
Sbjct: 13  MANCLMLLSRNTAPDHHFESSTSSSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 72

Query: 61  PDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARLTNHPS 120
            DGGNSDG    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       LTNHP 
Sbjct: 73  GDGGNSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLNDARLLTNHP- 132

Query: 121 SLSQPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCFF 173
                                ILCLDLNLTPSEND +FLQLGKSISMVDCFF
Sbjct: 133 --RXXXXXXXXXXXXXXXXXXILCLDLNLTPSENDSRFLQLGKSISMVDCFF 181

[Close]
BLAST of Carg00280 vs. TrEMBL
Match: tr|W9RAF7|W9RAF7_9ROSA (Zinc finger protein ZAT11 OS=Morus notabilis OX=981085 GN=L484_025373 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.9e-25
Identity = 109/174 (62.64%), Postives = 125/174 (71.84%), Query Frame = 0 

Query: 1   MANCLMLLSRSSASTTTDFES-SLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIV 60
           MANCLM LSR       ++ S S SSSP+RVFECKTCNRQFPSFQALGGHRASHKKPR++
Sbjct: 16  MANCLMFLSRGDHHHQFEYSSPSPSSSPSRVFECKTCNRQFPSFQALGGHRASHKKPRVM 75

Query: 61  GPDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH---ARLT 120
             DGG+S  S   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            R  
Sbjct: 76  TGDGGSSSDSQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMTEVNQAQHVVRPH 135

Query: 121 NHPSSL--SQPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMV 169
           +HP+ +  S     Q PV+KKTN   R+LCLDLNLTP END + LQLG ++ ++
Sbjct: 136 HHPALIMNSATTLQQVPVLKKTNSSRRVLCLDLNLTPLENDIKILQLGTTVQLI 189

[Close]
BLAST of Carg00280 vs. TrEMBL
Match: tr|B9SR50|B9SR50_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0466460 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.2e-23
Identity = 105/188 (55.85%), Postives = 120/188 (63.83%), Query Frame = 0 

Query: 1   MANCLMLLSRS----SASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKP 60
           MANCLMLLS+     S  +    + +  +S NRVFECKTCNRQFPSFQALGGHRASHKKP
Sbjct: 15  MANCLMLLSQGREIVSFPSFEAMKGTNINSSNRVFECKTCNRQFPSFQALGGHRASHKKP 74

Query: 61  RIVGPDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARLT 120
           R+   D G+ +  SS               XXXXXXXXXXXXXXXXXXXXXXXXX   + 
Sbjct: 75  RLTNGDVGSLETQSS------------PAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXIN 134

Query: 121 NHPSSLSQP-PRSQ------------PPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGK 172
           N  SSLS P P S             PPV+KK+N   R+LCLDLNLTP END +  +LGK
Sbjct: 135 NDSSSLSTPSPTSSAELMAVKPAGVAPPVMKKSN-SRRVLCLDLNLTPYENDVELFRLGK 189

[Close]
BLAST of Carg00280 vs. TrEMBL
Match: tr|A0A1B1LZW1|A0A1B1LZW1_BETPL (ZFP2 OS=Betula platyphylla OX=78630 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.0e-22
Identity = 80/175 (45.71%), Postives = 90/175 (51.43%), Query Frame = 0 

Query: 1   MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 60
           MANCLMLLSR        F    S+SP+RVFECKTCNR+F SFQALGGHRASHKKPR++G
Sbjct: 16  MANCLMLLSRGGGDQMDVF----SNSPSRVFECKTCNRKFSSFQALGGHRASHKKPRLMG 75

Query: 61  PDGGNSDGSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARLTNHPS 120
            D GN D  SS                                           L +   
Sbjct: 76  GD-GNLDSQSSSSHGSPTKPKAHECSICGIEFAIGQALGGHMRRHRQNQQAPLNLEDQNQ 135

Query: 121 S---LSQPP-RSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCF 172
           S   + +PP  SQ PVVKKT    R+LCLDLNLTP END     LG +  MVDCF
Sbjct: 136 SQGHIRRPPTSSQVPVVKKTT-SRRVLCLDLNLTPYEND-----LGLAPPMVDCF 179

The following BLAST results are available for this feature:
BLAST of Carg00280 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023545353.17.0e-6498.26zinc finger protein ZAT12-like [Cucurbita pepo subsp. pepo][more]
XP_022995602.12.0e-6397.67zinc finger protein ZAT12-like [Cucurbita maxima][more]
XP_022957121.13.0e-5994.19zinc finger protein ZAT12-like [Cucurbita moschata][more]
XP_008461644.13.7e-3371.51PREDICTED: zinc finger protein ZAT12-like [Cucumis melo][more]
XP_022985423.14.9e-3372.00zinc finger protein ZAT12-like [Cucurbita maxima][more]
BLAST of Carg00280 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37430.12.8e-1446.54C2H2 and C2HC zinc fingers superfamily protein[more]
AT2G28710.13.6e-1453.57C2H2-type zinc finger family protein[more]
AT3G53600.12.9e-1159.65C2H2-type zinc finger family protein[more]
AT5G59820.12.9e-1147.56C2H2-type zinc finger family protein[more]
AT2G28200.11.9e-1055.38C2H2-type zinc finger family protein[more]
BLAST of Carg00280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SLD4|ZAT11_ARATH5.0e-1346.54Zinc finger protein ZAT11 OS=Arabidopsis thaliana OX=3702 GN=ZAT11 PE=2 SV=1[more]
sp|Q42410|ZAT12_ARATH5.2e-1047.56Zinc finger protein ZAT12 OS=Arabidopsis thaliana OX=3702 GN=ZAT12 PE=2 SV=1[more]
sp|Q681X4|ZAT5_ARATH3.3e-0955.38Zinc finger protein ZAT5 OS=Arabidopsis thaliana OX=3702 GN=ZAT5 PE=2 SV=1[more]
sp|Q42453|ZAT7_ARATH1.2e-0640.70Zinc finger protein ZAT7 OS=Arabidopsis thaliana OX=3702 GN=ZAT7 PE=2 SV=1[more]
sp|Q9LX85|ZAT8_ARATH2.0e-0655.56Zinc finger protein ZAT8 OS=Arabidopsis thaliana OX=3702 GN=ZAT8 PE=2 SV=1[more]
BLAST of Carg00280 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CF73|A0A1S3CF73_CUCME2.5e-3371.51zinc finger protein ZAT12-like OS=Cucumis melo OX=3656 GN=LOC103500198 PE=4 SV=1[more]
tr|A0A0A0KLU2|A0A0A0KLU2_CUCSA3.6e-3272.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180920 PE=4 SV=1[more]
tr|W9RAF7|W9RAF7_9ROSA1.9e-2562.64Zinc finger protein ZAT11 OS=Morus notabilis OX=981085 GN=L484_025373 PE=4 SV=1[more]
tr|B9SR50|B9SR50_RICCO5.2e-2355.85Nucleic acid binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_04664... [more]
tr|A0A1B1LZW1|A0A1B1LZW1_BETPL2.0e-2245.71ZFP2 OS=Betula platyphylla OX=78630 PE=2 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036236Znf_C2H2_sf
IPR013087Znf_C2H2_type
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00280-RACarg00280-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 31..53
e-value: 0.16
score: 21.0
coord: 81..103
e-value: 0.5
score: 19.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 83..103
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 33..53
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 81..103
score: 8.912
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 31..58
score: 9.93
NoneNo IPR availableGENE3DG3DSA:3.30.160.60coord: 29..103
e-value: 1.8E-9
score: 39.8
NoneNo IPR availablePFAMPF13912zf-C2H2_6coord: 30..55
e-value: 3.1E-13
score: 49.2
coord: 80..105
e-value: 7.4E-10
score: 38.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..131
NoneNo IPR availablePANTHERPTHR26374FAMILY NOT NAMEDcoord: 1..161
NoneNo IPR availablePANTHERPTHR26374:SF162ZINC FINGER PROTEIN ZAT8coord: 1..161
IPR036236Zinc finger C2H2 superfamilySUPERFAMILYSSF57667beta-beta-alpha zinc fingerscoord: 29..103

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00280Cla004026Watermelon (97103) v1carwmB0663
Carg00280Csa5G180920Cucumber (Chinese Long) v2carcuB0694
Carg00280MELO3C023840Melon (DHL92) v3.5.1carmeB0660
Carg00280ClCG07G003170Watermelon (Charleston Gray)carwcgB0651
Carg00280CSPI05G09520Wild cucumber (PI 183967)carcpiB0706
Carg00280Cucsa.165460Cucumber (Gy14) v1carcgyB0746
Carg00280CmaCh04G002280Cucurbita maxima (Rimu)carcmaB0949
Carg00280CmaCh04G012020Cucurbita maxima (Rimu)carcmaB0948
Carg00280CmoCh04G012740Cucurbita moschata (Rifu)carcmoB0923
Carg00280CmoCh04G002310Cucurbita moschata (Rifu)carcmoB0924
Carg00280Lsi04G008710Bottle gourd (USVL1VR-Ls)carlsiB608
Carg00280Cp4.1LG05g08890Cucurbita pepo (Zucchini)carcpeB0946
Carg00280Cp4.1LG01g04690Cucurbita pepo (Zucchini)carcpeB0939
Carg00280Cp4.1LG01g10690Cucurbita pepo (Zucchini)carcpeB0938
Carg00280CsGy5G006840Cucumber (Gy14) v2carcgybB0670
Carg00280MELO3C023840.2Melon (DHL92) v3.6.1carmedB0670
Carg00280CsaV3_5G006930Cucumber (Chinese Long) v3carcucB0708
Carg00280Cla97C02G046380Watermelon (97103) v2carwmbB0693
Carg00280Cla97C07G131490Watermelon (97103) v2carwmbB0700
Carg00280Bhi10G000538Wax gourdcarwgoB0782
Carg00280Bhi07G000793Wax gourdcarwgoB0786
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg00280Carg03295Silver-seed gourdcarcarB360
Carg00280Carg23796Silver-seed gourdcarcarB569
The following block(s) are covering this gene:
GeneOrganismBlock
Carg00280Silver-seed gourdcarcarB303
Carg00280Cucurbita maxima (Rimu)carcmaB0942
Carg00280Cucurbita moschata (Rifu)carcmoB0916