CSPIUnG00790 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPIUnG00790
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Gb:AAC24089.1
Location	Scaffold000138 : 49242 .. 49673 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAACACACGGTAACCTCCGATGAACTTCTCGGAATCAAAATCTACACCGAAGAACACGCCAACGGCGGTGGGCGGAAAAGACGAGCAATGGCAAAAGGAATGCAAAAAACACGCTCAAAAACCTCAATGCTAGCTAGTAAACTTCCTTCCAACCGGCACTCTCCTAACCTTCGAAATGCTTCTGCCGTCGGTCTCCGGCAAGGGGGAGTGCACGCGGGTGAACACGATGATGATATATAAACTTCCTCTTGGGCTTATGGGCTTCTATCCTGTTTCTTGTTTCACTTCACAGACAGTTTCAAATTAGGCGTGGACGGGAAAGTTTATTACGGGATCGTGACGCGGAGAGGGCTGGCGGTGTTCAAGACGGGGTTGAGTGAGGTGGAAGTGGCGAAGGAGGAGAGGTTATGGAAAGCTTTCCTTTGA

mRNA sequence

ATGGACAAACACACGGTAACCTCCGATGAACTTCTCGGAATCAAAATCTACACCGAAGAACACGCCAACGGCGGTGGGCGGAAAAGACGAGCAATGGCAAAAGGAATGCAAAAAACACGCTCAAAAACCTCAATGCTAGCTAGTAAACTTCCTTCCAACCGGCACTCTCCTAACCTTCGAAATGCTTCTGCCGTCGGTCTCCGGCAAGGGGGAGTGCACGCGGACAGTTTCAAATTAGGCGTGGACGGGAAAGTTTATTACGGGATCGTGACGCGGAGAGGGCTGGCGGTGTTCAAGACGGGGTTGAGTGAGGTGGAAGTGGCGAAGGAGGAGAGGTTATGGAAAGCTTTCCTTTGA

Coding sequence (CDS)

ATGGACAAACACACGGTAACCTCCGATGAACTTCTCGGAATCAAAATCTACACCGAAGAACACGCCAACGGCGGTGGGCGGAAAAGACGAGCAATGGCAAAAGGAATGCAAAAAACACGCTCAAAAACCTCAATGCTAGCTAGTAAACTTCCTTCCAACCGGCACTCTCCTAACCTTCGAAATGCTTCTGCCGTCGGTCTCCGGCAAGGGGGAGTGCACGCGGACAGTTTCAAATTAGGCGTGGACGGGAAAGTTTATTACGGGATCGTGACGCGGAGAGGGCTGGCGGTGTTCAAGACGGGGTTGAGTGAGGTGGAAGTGGCGAAGGAGGAGAGGTTATGGAAAGCTTTCCTTTGA

Homology

[Close]

BLAST of CSPIUnG00790 vs. TrEMBL
Match: A0A0A0LN36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G335560 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.4e-58
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MDKHTVTSDELLGIKIYTEEHANGGGRKRRAMAKGMQKTRSKTSMLASKLPSNRHSPNLR 60
           MDKHTVTSDELLGIKIYTEEHANGGGRKRRAMAKGMQKTRSKTSMLASKLPSNRHSPNLR
Sbjct: 1   MDKHTVTSDELLGIKIYTEEHANGGGRKRRAMAKGMQKTRSKTSMLASKLPSNRHSPNLR 60

Query: 61  NASAVGLRQGGVHADSFKLGVDGKVYYGIVTRRGLAVFKTGLSEVEVAKEERLWKAFL 119
           NASAVGLRQGGVHADSFKLGVDGKVYYGIVTRRGLAVFKTGLSEVEVAKEERLWKAFL
Sbjct: 61  NASAVGLRQGGVHADSFKLGVDGKVYYGIVTRRGLAVFKTGLSEVEVAKEERLWKAFL 118

[Close]

BLAST of CSPIUnG00790 vs. TrEMBL
Match: A0A0A0LW65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G267250 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.2e-22
Identity = 77/141 (54.61%), Postives = 83/141 (58.87%), Query Frame = 1


Query: 1   MDKHTVTSDELLGIKIYTEEHAN-------GGGRKRRAMAKGMQKTRSKTSMLASKLPSN 60
           MD+HTVTSDE LGIKIYT    N       GGGRKRRAMAKGMQKT SKTSML + LP+ 
Sbjct: 1   MDEHTVTSDEDLGIKIYTSTPPNEEPPSSGGGGRKRRAMAKGMQKTLSKTSMLVNFLPTG 60

Query: 61  R------------------HSPNLRNASAVGLRQGGVH----ADSFKLGVDGKVYYGIVT 113
                              H   +     +GL           DSFK GVDGKVYYGIVT
Sbjct: 61  TLLTFEMLLPSVSGKGECTHVNTMMINFLLGLCALSCFLFHFTDSFK-GVDGKVYYGIVT 120

[Close]

BLAST of CSPIUnG00790 vs. TrEMBL
Match: W9QF74_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013595 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.0e-09
Identity = 51/109 (46.79%), Postives = 60/109 (55.05%), Query Frame = 1


Query: 26  GRKRRAMAKGMQKTRSKTSMLASKLPSNR-------HSPNLRNASAVGLRQGGVH----- 85
           GRKRR +AKG+QKT SKTSMLA+ LP+              RN     +    VH     
Sbjct: 48  GRKRRVVAKGVQKTLSKTSMLANFLPTGTLLTFEMVLPAIYRNGGCSAVTTAMVHVLLGL 107

Query: 86  ----------ADSFKLGVDGKVYYGIVTRRGLAVFKTGLSEVEVAKEER 113
                      DSF+ G DGKVYYG VT +GLAVFK GL +VEV K+ER
Sbjct: 108 CSLSCFFFHFTDSFR-GPDGKVYYGFVTPKGLAVFKPGL-DVEVPKDER 154

[Close]

BLAST of CSPIUnG00790 vs. TrEMBL
Match: V4SZ77_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013797mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-09
Identity = 62/153 (40.52%), Postives = 74/153 (48.37%), Query Frame = 1


Query: 1   MDKHTVTSDELLGIKIYTEEHANGG-------------------GRKRRAMAKGMQKTRS 60
           M++H     E +GIKIY      G                    GRKRRA+AKG+QKT S
Sbjct: 1   MEQH----QEGIGIKIYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTIS 60

Query: 61  KTSMLASKLPS------NRHSPNL-RNASAVGLRQGGVH---------------ADSFKL 113
           KTSML + LP+          P++  N     +    +H                DSF+ 
Sbjct: 61  KTSMLVNFLPTGTLLTFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFR- 120

[Close]

BLAST of CSPIUnG00790 vs. TrEMBL
Match: A0A068TX35_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00034276001 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-09
Identity = 52/111 (46.85%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 25  GGRKRRAMAKGMQKTRSKTSMLASKLPSN-------------------RHSPNLRNASAV 84
           GGRKRRA+A G+QKT SKTSML + LP+                     H   L   S +
Sbjct: 40  GGRKRRAVANGVQKTLSKTSMLVNFLPTGTLLTFEMVLPSIHAAKGECSHVTTLMTHSLL 99

Query: 85  GLRQGGV----HADSFKLGVDGKVYYGIVTRRGLAVFKTGLSEVEVAKEER 113
           GL           DSF+ G DGKVYYG VT +GLAVFK GL  VEV K+ER
Sbjct: 100 GLCTLSCFFFHFTDSFR-GPDGKVYYGFVTPKGLAVFKHGLG-VEVPKDER 148

[Close]

BLAST of CSPIUnG00790 vs. TAIR10
Match: AT1G09157.1 (AT1G09157.1 Protein of unknown function (DUF679))

HSP 1 Score: 53.9 bits (128), Expect = 7.8e-08
Identity = 42/97 (43.30%), Postives = 51/97 (52.58%), Query Frame = 1


Query: 24  GGGRKRRAMAKGMQKTRSKTSMLASKLPS------NRHSPNL-RNASAVGLRQGGVH--- 83
           G GRKRR +AKG+QKT SKTSML + LP+          P + R+    G+    +H   
Sbjct: 49  GKGRKRRMVAKGVQKTVSKTSMLVNFLPTGTLLMFEMVLPTIYRDGDCNGINTLMIHLLL 108

Query: 84  ------------ADSFKLGVDGKVYYGIVTRRGLAVF 99
                        DSFK   DGK+YYG VT RGLAVF
Sbjct: 109 LLCAMSCFFFHFTDSFKAS-DGKIYYGFVTPRGLAVF 144

[Close]

BLAST of CSPIUnG00790 vs. TAIR10
Match: AT5G39650.1 (AT5G39650.1 Protein of unknown function (DUF679))

HSP 1 Score: 52.8 bits (125), Expect = 1.7e-07
Identity = 41/97 (42.27%), Postives = 52/97 (53.61%), Query Frame = 1


Query: 24  GGGRKRRAMAKGMQKTRSKTSMLASKLPS------NRHSPNL-RNASAVGLRQGGVH--- 83
           G GRKRR +A+G+QKT SKTSML + LP+          P++ R+    G+    +H   
Sbjct: 50  GRGRKRRMVAQGVQKTVSKTSMLVNFLPTGTLLMFEMVLPSIYRDGDCNGINTLMIHLLL 109

Query: 84  ------------ADSFKLGVDGKVYYGIVTRRGLAVF 99
                        DSFK   DGK+YYG VT RGLAVF
Sbjct: 110 LLCAMSCFFFHFTDSFKAS-DGKIYYGFVTPRGLAVF 145

[Close]

BLAST of CSPIUnG00790 vs. NCBI nr
Match: gi|700207088|gb|KGN62207.1| (hypothetical protein Csa_2G335560 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 3.5e-58
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MDKHTVTSDELLGIKIYTEEHANGGGRKRRAMAKGMQKTRSKTSMLASKLPSNRHSPNLR 60
           MDKHTVTSDELLGIKIYTEEHANGGGRKRRAMAKGMQKTRSKTSMLASKLPSNRHSPNLR
Sbjct: 1   MDKHTVTSDELLGIKIYTEEHANGGGRKRRAMAKGMQKTRSKTSMLASKLPSNRHSPNLR 60

Query: 61  NASAVGLRQGGVHADSFKLGVDGKVYYGIVTRRGLAVFKTGLSEVEVAKEERLWKAFL 119
           NASAVGLRQGGVHADSFKLGVDGKVYYGIVTRRGLAVFKTGLSEVEVAKEERLWKAFL
Sbjct: 61  NASAVGLRQGGVHADSFKLGVDGKVYYGIVTRRGLAVFKTGLSEVEVAKEERLWKAFL 118

[Close]

BLAST of CSPIUnG00790 vs. NCBI nr
Match: gi|449457987|ref|XP_004146729.1| (PREDICTED: uncharacterized protein LOC101222659 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 8.9e-22
Identity = 77/141 (54.61%), Postives = 83/141 (58.87%), Query Frame = 1


Query: 1   MDKHTVTSDELLGIKIYTEEHAN-------GGGRKRRAMAKGMQKTRSKTSMLASKLPSN 60
           MD+HTVTSDE LGIKIYT    N       GGGRKRRAMAKGMQKT SKTSML + LP+ 
Sbjct: 1   MDEHTVTSDEDLGIKIYTSTPPNEEPPSSGGGGRKRRAMAKGMQKTLSKTSMLVNFLPTG 60

Query: 61  R------------------HSPNLRNASAVGLRQGGVH----ADSFKLGVDGKVYYGIVT 113
                              H   +     +GL           DSFK GVDGKVYYGIVT
Sbjct: 61  TLLTFEMLLPSVSGKGECTHVNTMMINFLLGLCALSCFLFHFTDSFK-GVDGKVYYGIVT 120

[Close]

BLAST of CSPIUnG00790 vs. NCBI nr
Match: gi|659121921|ref|XP_008460881.1| (PREDICTED: uncharacterized protein LOC103499624 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 76/149 (51.01%), Postives = 82/149 (55.03%), Query Frame = 1


Query: 1   MDKHTVTSDELLGIKIYTE-------------EH--ANGGGRKRRAMAKGMQKTRSKTSM 60
           MD+HTVTSDE LGIKIYT              +H   N GGRKRRAMAKGMQKT SKTSM
Sbjct: 1   MDEHTVTSDEDLGIKIYTSTPPNEEPPSSYTTDHHPPNDGGRKRRAMAKGMQKTLSKTSM 60

Query: 61  LASKLP--------------SNRHSPNLRNASAVGLRQGGV--------HADSFKLGVDG 113
           L + LP              S +      N   +    G            DSFK GVDG
Sbjct: 61  LVNFLPTGTLLTFEMLLPSVSGKGECTPVNTMMINFLLGLCALSCFLFHFTDSFK-GVDG 120

[Close]

BLAST of CSPIUnG00790 vs. NCBI nr
Match: gi|659086635|ref|XP_008444039.1| (PREDICTED: uncharacterized protein LOC103487490 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-18
Identity = 72/143 (50.35%), Postives = 81/143 (56.64%), Query Frame = 1


Query: 1   MDKHTVTSD-ELLGIKIYT--------EEHANGGGRKRRAMAKGMQKTRSKTSMLASKLP 60
           M+ HT+T+  E LGIKIYT        + H +GG RKRRAMAKGMQKT SKTSML + LP
Sbjct: 1   MEDHTLTTTHEDLGIKIYTSTPTNEETDHHPDGGARKRRAMAKGMQKTLSKTSMLVNFLP 60

Query: 61  --------------SNRHSPNLRNASAVGLRQGGV--------HADSFKLGVDGKVYYGI 113
                         S +      N   +    G            DSFK GVDGKVYYGI
Sbjct: 61  TGTLLTFEMLLPSVSGKGECTPVNTMMINFLLGLCALSCFLFHFTDSFK-GVDGKVYYGI 120

[Close]

BLAST of CSPIUnG00790 vs. NCBI nr
Match: gi|1009154349|ref|XP_015895121.1| (PREDICTED: uncharacterized protein LOC107429017 [Ziziphus jujuba])

HSP 1 Score: 73.2 bits (178), Expect = 3.5e-10
Identity = 63/143 (44.06%), Postives = 73/143 (51.05%), Query Frame = 1


Query: 10  ELLGIKIYTEEHANG------------------GGRKRRAMAKGMQKTRSKTSMLASKLP 69
           E +GIKIYT    N                   GGRKRRAMAKGMQKT SKTSML + LP
Sbjct: 6   EDIGIKIYTATPQNDQTLYPSSPQSTIITTTEEGGRKRRAMAKGMQKTLSKTSMLVNFLP 65

Query: 70  SN---RHSPNLRNASAVG----LRQGGVHA---------------DSFKLGVDGKVYYGI 113
           +         L + S  G    +    +HA               DSFK G DGKVYYG 
Sbjct: 66  TGTLLTFEMLLPSVSGDGQCSPVSTLMIHALLGLCTLSCFFFHFTDSFK-GPDGKVYYGF 125

The following BLAST results are available for this feature:

BLAST of CSPIUnG00790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPIUnG00790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN36_CUCSA	2.4e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G335560 PE=4 SV=1	[more]
A0A0A0LW65_CUCSA	6.2e-22	54.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G267250 PE=4 SV=1	[more]
W9QF74_9ROSA	6.0e-09	46.79	Uncharacterized protein OS=Morus notabilis GN=L484_013595 PE=4 SV=1	[more]
V4SZ77_9ROSI	7.9e-09	40.52	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013797mg PE=4 SV=1	[more]
A0A068TX35_COFCA	7.9e-09	46.85	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00034276001 PE=4 SV=1	[more]

BLAST of CSPIUnG00790 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09157.1	7.8e-08	43.30	Protein of unknown function (DUF679)	[more]
AT5G39650.1	1.7e-07	42.27	Protein of unknown function (DUF679)	[more]

BLAST of CSPIUnG00790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207088\|gb\|KGN62207.1\|	3.5e-58	100.00	hypothetical protein Csa_2G335560 [Cucumis sativus]	[more]
gi\|449457987\|ref\|XP_004146729.1\|	8.9e-22	54.61	PREDICTED: uncharacterized protein LOC101222659 [Cucumis sativus]	[more]
gi\|659121921\|ref\|XP_008460881.1\|	1.4e-19	51.01	PREDICTED: uncharacterized protein LOC103499624 [Cucumis melo]	[more]
gi\|659086635\|ref\|XP_008444039.1\|	2.7e-18	50.35	PREDICTED: uncharacterized protein LOC103487490 [Cucumis melo]	[more]
gi\|1009154349\|ref\|XP_015895121.1\|	3.5e-10	44.06	PREDICTED: uncharacterized protein LOC107429017 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0090332	stomatal closure
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPIUnG00790.1	CSPIUnG00790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31621	FAMILY NOT NAMED	coord: 14..112 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPIUnG00790	Csa2G335560	Cucumber (Chinese Long) v2	cpicuB056
CSPIUnG00790	MELO3C023229.2	Melon (DHL92) v3.6.1	cpimedB079
CSPIUnG00790	CsGy2G015850	Cucumber (Gy14) v2	cgybcpiB055

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPIUnG00790	Wax gourd	cpiwgoB121
CSPIUnG00790	Cucumber (Gy14) v1	cgycpiB338
CSPIUnG00790	Cucurbita moschata (Rifu)	cmocpiB575
CSPIUnG00790	Melon (DHL92) v3.5.1	cpimeB088
CSPIUnG00790	Watermelon (Charleston Gray)	cpiwcgB096
CSPIUnG00790	Watermelon (97103) v1	cpiwmB104
CSPIUnG00790	Bottle gourd (USVL1VR-Ls)	cpilsiB084
CSPIUnG00790	Silver-seed gourd	carcpiB1091
CSPIUnG00790	Cucumber (Chinese Long) v3	cpicucB068
CSPIUnG00790	Watermelon (97103) v2	cpiwmbB095