CSPI07G19360 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G19360
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 17058634 .. 17059937 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAATAGTAGAGGGTCTTTTCCACCCACCACATTCTTCTACTCCTCTGGTTTGCTCAACTTTTAATTGGTGTCTTCCTTGTGAAAGTTACTTCAAACCCAGCTTGGATTTCTGAAGCTTTTAATGTAAAAACAAAGTGTTTAAAAAAATAATTTTCATATCTTAATTGTTTTGCTGTCAAAACCACCACTGTGAGAGTAAAATTGGCTCAATTTCAGTCCCTAAATCATTCTAATTCAAAGTTAATACATCCTCGATTTATAGGTGTCCACTCATAAAAAACATAGATAAATGACTAAGATGAAATTGAAAAAAAGATTAATGTGTTCTCTTTTAAAGCCAACATGTCTGGAAAGCTTTTAAGAAAAAATAAATGAATGAAAACTTTTTATATTAATTTAATAATTAATTCAAACATGCTATAACTATTTTTTTTTACATTATGATTGATGCAACATTGGTCTTTTCGGATCAATAACAATAATGTTACATAAACTAACCTTATACTAATTACATTTACTATTTTCATCTGACTTGTTGTGTCAACATTAAACCATTCATTATAAATTTAGGACATAATTTCCAATCTTGTTTAATCCAATTCCTAATCTTTAACACTTCAATTCATATGTAATAAATATTTTAAATTTGGTTACTTTTTCTTTTGGTAAAGATATTGTATTTAAAGCCTAAGAAAGAAAAAATGAACATGTAACGTTAAAAGTTGACATAGGAGAAGCAATTAAAGTACACTGAAATTTCATTTAAAGTTGCATTCAAATCTAAAGGGGAAGAAAAAAGAATCCAAGTTGTTAATTATTTGGTAAAATTTTGAATCTGCAACCCCACCATCCACATATCATCAAACGGCCGACGTAAGACTCGCTCAAACCAATTACTTAATTCATTTTAACCCAAAATTAGCATCTTAATCTCACCTATAAATAATCTCAATTACCATTCATTATTCCTCAGGCAGCAATCCATCAATCAATCAATCAATCAATCAATCAAAGGCTTCTTCGGTTCGATCGCTCTCATCTCCACCGGAAGTGAGTTTTCTGCCGAAGAAAGCCAATTCGCTCAACCCCATCCCATCATCCTCAATGGAAATGAAGAAGATCGCCTGCGCTGCTCTTTTCGCCGCCGCTGCCATCAGCGCCGCCGTGGCTGCCGATGAGTCTCTCTCTCCCGGCGCTTCTCCCGCCGCTGCCCCGGGGCCGAGCAGTGCCGCCTCCGCCGCTCTCCCCGTTCTCGGTGCCTCAGTTGTTTCCTTTGTTGCTGCTTACTTCTTGAACTGA

mRNA sequence

ATGGGGAATAGTAGAGGGTCTTTTCCACCCACCACATTCTTCTACTCCTCTGGCAGCAATCCATCAATCAATCAATCAATCAATCAATCAAAGGCTTCTTCGGTTCGATCGCTCTCATCTCCACCGGAAGTGAGTTTTCTGCCGAAGAAAGCCAATTCGCTCAACCCCATCCCATCATCCTCAATGGAAATGAAGAAGATCGCCTGCGCTGCTCTTTTCGCCGCCGCTGCCATCAGCGCCGCCGTGGCTGCCGATGAGTCTCTCTCTCCCGGCGCTTCTCCCGCCGCTGCCCCGGGGCCGAGCAGTGCCGCCTCCGCCGCTCTCCCCGTTCTCGGTGCCTCAGTTGTTTCCTTTGTTGCTGCTTACTTCTTGAACTGA

Coding sequence (CDS)

ATGGGGAATAGTAGAGGGTCTTTTCCACCCACCACATTCTTCTACTCCTCTGGCAGCAATCCATCAATCAATCAATCAATCAATCAATCAAAGGCTTCTTCGGTTCGATCGCTCTCATCTCCACCGGAAGTGAGTTTTCTGCCGAAGAAAGCCAATTCGCTCAACCCCATCCCATCATCCTCAATGGAAATGAAGAAGATCGCCTGCGCTGCTCTTTTCGCCGCCGCTGCCATCAGCGCCGCCGTGGCTGCCGATGAGTCTCTCTCTCCCGGCGCTTCTCCCGCCGCTGCCCCGGGGCCGAGCAGTGCCGCCTCCGCCGCTCTCCCCGTTCTCGGTGCCTCAGTTGTTTCCTTTGTTGCTGCTTACTTCTTGAACTGA
Homology
[Close]
BLAST of CSPI07G19360 vs. TrEMBL
Match: A0A0A0K6L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428800 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.0e-20
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

Query: 62  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA 121
           MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA
Sbjct: 1   MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA 60

Query: 122 YFLN 126
           YFLN
Sbjct: 61  YFLN 64

[Close]
BLAST of CSPI07G19360 vs. TAIR10
Match: AT3G57690.1 (AT3G57690.1 arabinogalactan protein 23)

HSP 1 Score: 48.9 bits (115), Expect = 2.7e-06
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1 

Query: 62  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVL----GASVVS 121
           MEMKKIAC  LFAAA+++A +AA+E  +P      APGP+SAASAALP L    GAS+VS
Sbjct: 1   MEMKKIACGVLFAAASMTAVMAAEEVGAP------APGPASAASAALPALGSLVGASLVS 59

Query: 122 FVAAY 123
             + Y
Sbjct: 61  LFSYY 59

[Close]
BLAST of CSPI07G19360 vs. NCBI nr
Match: gi|700189910|gb|KGN45143.1| (hypothetical protein Csa_7G428800 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

Query: 62  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA 121
           MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA
Sbjct: 1   MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA 60

Query: 122 YFLN 126
           YFLN
Sbjct: 61  YFLN 64

[Close]
BLAST of CSPI07G19360 vs. NCBI nr
Match: gi|659122692|ref|XP_008461276.1| (PREDICTED: arabinogalactan peptide 23-like [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 1 

Query: 62  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA 121
           MEMKKIACAALFAAAA+SAAVAADES+    SPAAAPGPSSAASAALPVLGASVVSFVAA
Sbjct: 1   MEMKKIACAALFAAAAVSAAVAADESI----SPAAAPGPSSAASAALPVLGASVVSFVAA 60

Query: 122 YFLN 126
           YFLN
Sbjct: 61  YFLN 60

The following BLAST results are available for this feature:
BLAST of CSPI07G19360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G19360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6L5_CUCSA8.0e-20100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428800 PE=4 SV=1[more]
BLAST of CSPI07G19360 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G57690.12.7e-0656.92 arabinogalactan protein 23[more]
BLAST of CSPI07G19360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189910|gb|KGN45143.1|1.2e-19100.00hypothetical protein Csa_7G428800 [Cucumis sativus][more]
gi|659122692|ref|XP_008461276.1|1.3e-1590.63PREDICTED: arabinogalactan peptide 23-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G19360.1CSPI07G19360.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34672FAMILY NOT NAMEDcoord: 62..125
score: 3.4
NoneNo IPR availablePANTHERPTHR34672:SF2ARABINOGALACTAN PEPTIDE 23-RELATEDcoord: 62..125
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G19360CsaV3_7G031190Cucumber (Chinese Long) v3cpicucB414
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G19360Melon (DHL92) v3.6.1cpimedB512
CSPI07G19360Melon (DHL92) v3.6.1cpimedB539
CSPI07G19360Melon (DHL92) v3.6.1cpimedB544
CSPI07G19360Melon (DHL92) v3.6.1cpimedB546
CSPI07G19360Melon (DHL92) v3.6.1cpimedB550
CSPI07G19360Cucumber (Gy14) v2cgybcpiB047
CSPI07G19360Cucumber (Gy14) v2cgybcpiB154
CSPI07G19360Cucumber (Gy14) v2cgybcpiB331
CSPI07G19360Silver-seed gourdcarcpiB0391
CSPI07G19360Silver-seed gourdcarcpiB0489
CSPI07G19360Silver-seed gourdcarcpiB0561
CSPI07G19360Silver-seed gourdcarcpiB0801
CSPI07G19360Silver-seed gourdcarcpiB0967
CSPI07G19360Cucumber (Chinese Long) v3cpicucB383
CSPI07G19360Cucumber (Chinese Long) v3cpicucB395
CSPI07G19360Cucumber (Chinese Long) v3cpicucB401
CSPI07G19360Cucumber (Chinese Long) v3cpicucB408
CSPI07G19360Watermelon (97103) v2cpiwmbB561
CSPI07G19360Watermelon (97103) v2cpiwmbB551
CSPI07G19360Watermelon (97103) v2cpiwmbB541
CSPI07G19360Watermelon (97103) v2cpiwmbB587
CSPI07G19360Wax gourdcpiwgoB658
CSPI07G19360Wax gourdcpiwgoB716
CSPI07G19360Wax gourdcpiwgoB692
CSPI07G19360Cucurbita maxima (Rimu)cmacpiB934
CSPI07G19360Wild cucumber (PI 183967)cpicpiB054
CSPI07G19360Wild cucumber (PI 183967)cpicpiB148
CSPI07G19360Wild cucumber (PI 183967)cpicpiB142
CSPI07G19360Wild cucumber (PI 183967)cpicpiB173
CSPI07G19360Cucumber (Gy14) v1cgycpiB032
CSPI07G19360Cucumber (Gy14) v1cgycpiB061
CSPI07G19360Cucumber (Gy14) v1cgycpiB211
CSPI07G19360Cucumber (Gy14) v1cgycpiB307
CSPI07G19360Cucumber (Gy14) v1cgycpiB365
CSPI07G19360Cucurbita maxima (Rimu)cmacpiB081
CSPI07G19360Cucurbita maxima (Rimu)cmacpiB276
CSPI07G19360Cucurbita maxima (Rimu)cmacpiB392
CSPI07G19360Cucurbita maxima (Rimu)cmacpiB502
CSPI07G19360Cucurbita maxima (Rimu)cmacpiB581
CSPI07G19360Cucurbita maxima (Rimu)cmacpiB652
CSPI07G19360Cucurbita moschata (Rifu)cmocpiB266
CSPI07G19360Cucurbita moschata (Rifu)cmocpiB381
CSPI07G19360Cucurbita moschata (Rifu)cmocpiB492
CSPI07G19360Cucurbita moschata (Rifu)cmocpiB569
CSPI07G19360Cucurbita moschata (Rifu)cmocpiB645
CSPI07G19360Cucurbita moschata (Rifu)cmocpiB913
CSPI07G19360Cucumber (Chinese Long) v2cpicuB338
CSPI07G19360Cucumber (Chinese Long) v2cpicuB350
CSPI07G19360Cucumber (Chinese Long) v2cpicuB354
CSPI07G19360Melon (DHL92) v3.5.1cpimeB525
CSPI07G19360Melon (DHL92) v3.5.1cpimeB559
CSPI07G19360Melon (DHL92) v3.5.1cpimeB564
CSPI07G19360Watermelon (Charleston Gray)cpiwcgB543
CSPI07G19360Watermelon (Charleston Gray)cpiwcgB560
CSPI07G19360Watermelon (Charleston Gray)cpiwcgB572
CSPI07G19360Watermelon (97103) v1cpiwmB571
CSPI07G19360Watermelon (97103) v1cpiwmB593
CSPI07G19360Watermelon (97103) v1cpiwmB619
CSPI07G19360Cucurbita pepo (Zucchini)cpecpiB163
CSPI07G19360Cucurbita pepo (Zucchini)cpecpiB302
CSPI07G19360Cucurbita pepo (Zucchini)cpecpiB344
CSPI07G19360Cucurbita pepo (Zucchini)cpecpiB588
CSPI07G19360Cucurbita pepo (Zucchini)cpecpiB637
CSPI07G19360Bottle gourd (USVL1VR-Ls)cpilsiB503
CSPI07G19360Bottle gourd (USVL1VR-Ls)cpilsiB517
CSPI07G19360Bottle gourd (USVL1VR-Ls)cpilsiB530
CSPI07G19360Bottle gourd (USVL1VR-Ls)cpilsiB535
CSPI07G19360Bottle gourd (USVL1VR-Ls)cpilsiB545