CSPI07G18960 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCACTAGAAGGAATTCTTTCGGGTGTTGGAGTGGAGATCTTGAAGAAGCTTAGCTCTCATGCTTCAGAATGCCTTGGAATGCTATGGGGTCTTAATGATGATCTTAACAAACTAAGGAGCAATGTTTCATCCATTCAATCTGTACTTCGTGATGCAGAGCAACGTCAAATCAAAGGCAATGATCATTCTTTAACCGATTGGCTCGAAAAGTTGGGAGACGTTTTTTACGATGTTGAGGACGTTCTTGATGAAATCTCTACTGAGGCTCTCAGGAGAAGTGATGACAAGAGGAAAAAATGCAAAGCAGGTTAG ATGGCACTAGAAGGAATTCTTTCGGGTGTTGGAGTGGAGATCTTGAAGAAGCTTAGCTCTCATGCTTCAGAATGCCTTGGAATGCTATGGGGTCTTAATGATGATCTTAACAAACTAAGGAGCAATGTTTCATCCATTCAATCTGTACTTCGTGATGCAGAGCAACGTCAAATCAAAGGCAATGATCATTCTTTAACCGATTGGCTCGAAAAGTTGGGAGACGTTTTTTACGATGTTGAGGACGTTCTTGATGAAATCTCTACTGAGGCTCTCAGGAGAAGTGATGACAAGAGGAAAAAATGCAAAGCAGGTTAG ATGGCACTAGAAGGAATTCTTTCGGGTGTTGGAGTGGAGATCTTGAAGAAGCTTAGCTCTCATGCTTCAGAATGCCTTGGAATGCTATGGGGTCTTAATGATGATCTTAACAAACTAAGGAGCAATGTTTCATCCATTCAATCTGTACTTCGTGATGCAGAGCAACGTCAAATCAAAGGCAATGATCATTCTTTAACCGATTGGCTCGAAAAGTTGGGAGACGTTTTTTACGATGTTGAGGACGTTCTTGATGAAATCTCTACTGAGGCTCTCAGGAGAAGTGATGACAAGAGGAAAAAATGCAAAGCAGGTTAG
BLAST of CSPI07G18960 vs. Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2) HSP 1 Score: 65.1 bits (157), Expect = 5.3e-10 Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 1
BLAST of CSPI07G18960 vs. Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 2.0e-09 Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = 1
BLAST of CSPI07G18960 vs. Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 2.0e-09 Identity = 30/79 (37.97%), Postives = 53/79 (67.09%), Query Frame = 1
BLAST of CSPI07G18960 vs. Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2) HSP 1 Score: 58.5 bits (140), Expect = 5.0e-08 Identity = 28/67 (41.79%), Postives = 45/67 (67.16%), Query Frame = 1
BLAST of CSPI07G18960 vs. TrEMBL
Match: A0A0A0K6I1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G425900 PE=4 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 1.8e-41 Identity = 92/100 (92.00%), Postives = 93/100 (93.00%), Query Frame = 1
BLAST of CSPI07G18960 vs. TrEMBL
Match: A0A0A0K603_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G426510 PE=4 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17 Identity = 55/90 (61.11%), Postives = 63/90 (70.00%), Query Frame = 1
BLAST of CSPI07G18960 vs. TrEMBL
Match: A0A0A0K9P7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G425940 PE=3 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 7.7e-16 Identity = 42/90 (46.67%), Postives = 65/90 (72.22%), Query Frame = 1
BLAST of CSPI07G18960 vs. TrEMBL
Match: A0A0A0KBE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G425930 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 3.8e-15 Identity = 44/90 (48.89%), Postives = 63/90 (70.00%), Query Frame = 1
BLAST of CSPI07G18960 vs. TrEMBL
Match: A0A0D2SQD8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G365300 PE=3 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 1.1e-14 Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1
BLAST of CSPI07G18960 vs. TAIR10
Match: AT3G14470.1 (AT3G14470.1 NB-ARC domain-containing disease resistance protein) HSP 1 Score: 47.0 bits (110), Expect = 8.4e-06 Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 1
BLAST of CSPI07G18960 vs. TAIR10
Match: AT3G46730.1 (AT3G46730.1 NB-ARC domain-containing disease resistance protein) HSP 1 Score: 47.0 bits (110), Expect = 8.4e-06 Identity = 26/84 (30.95%), Postives = 46/84 (54.76%), Query Frame = 1
BLAST of CSPI07G18960 vs. NCBI nr
Match: gi|778728511|ref|XP_011659431.1| (PREDICTED: disease resistance protein RGA2-like isoform X1 [Cucumis sativus]) HSP 1 Score: 176.4 bits (446), Expect = 2.6e-41 Identity = 92/100 (92.00%), Postives = 93/100 (93.00%), Query Frame = 1
BLAST of CSPI07G18960 vs. NCBI nr
Match: gi|700189865|gb|KGN45098.1| (hypothetical protein Csa_7G425900 [Cucumis sativus]) HSP 1 Score: 176.4 bits (446), Expect = 2.6e-41 Identity = 92/100 (92.00%), Postives = 93/100 (93.00%), Query Frame = 1
BLAST of CSPI07G18960 vs. NCBI nr
Match: gi|659122964|ref|XP_008461415.1| (PREDICTED: putative disease resistance protein RGA3 [Cucumis melo]) HSP 1 Score: 142.9 bits (359), Expect = 3.2e-31 Identity = 79/100 (79.00%), Postives = 84/100 (84.00%), Query Frame = 1
BLAST of CSPI07G18960 vs. NCBI nr
Match: gi|778728571|ref|XP_004136126.2| (PREDICTED: putative disease resistance protein RGA4 [Cucumis sativus]) HSP 1 Score: 96.7 bits (239), Expect = 2.6e-17 Identity = 55/90 (61.11%), Postives = 63/90 (70.00%), Query Frame = 1
BLAST of CSPI07G18960 vs. NCBI nr
Match: gi|700189877|gb|KGN45110.1| (hypothetical protein Csa_7G426510 [Cucumis sativus]) HSP 1 Score: 96.7 bits (239), Expect = 2.6e-17 Identity = 55/90 (61.11%), Postives = 63/90 (70.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |