CSPI07G17880 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G17880
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 16084903 .. 16085434 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGACGATCTTAATAATCAACCTTGCACTTCACCTCATCATTTTTGGTTGACGGATATGCCTGTTAACAGTAAGCTCATTCATGTTTCTCAAATTTGAATTAACCTTCAAATTACTAATTAATACAACTTCTCACATTCTAGTTATGAAAATTAGATAATTACAGTAACCCATTCTTATATTATTATGAAACGTCTTTGGAATGTTCGATAATATGTGTGGTTAAGCCAAGGAAGATAATTGATCCATTATTATTGATTTTGATTCAGATAGAAGCTTAGGAAGAGAAGAAAACTCAGCCGTCCCGACTGCCTCGATCAATATTGGAGAATTTGGTGAATCGTCCACCGGAGAATTGGGTGGTCGGTCCGTGGCAGAAAGTGGAGATCAAAACAATTCTTTTGATGCTGATGAGCCTTTACAGAGACAAGAAATTTTCCCTAGAAGGACACGTTTCATTTGGACTGATGAATACCATCGAATATTTGTTGAGGCTGTTGATCGTTTAACACTTCAGAGTAAGTGTTAA

mRNA sequence

ATGAGCGACGATCTTAATAATCAACCTTGCACTTCACCTCATCATTTTTGGTTGACGGATATGCCTGTTAACAATAGAAGCTTAGGAAGAGAAGAAAACTCAGCCGTCCCGACTGCCTCGATCAATATTGGAGAATTTGGTGAATCGTCCACCGGAGAATTGGGTGGTCGGTCCGTGGCAGAAAGTGGAGATCAAAACAATTCTTTTGATGCTGATGAGCCTTTACAGAGACAAGAAATTTTCCCTAGAAGGACACGTTTCATTTGGACTGATGAATACCATCGAATATTTGTTGAGGCTGTTGATCGTTTAACACTTCAGAGTAAGTGTTAA

Coding sequence (CDS)

ATGAGCGACGATCTTAATAATCAACCTTGCACTTCACCTCATCATTTTTGGTTGACGGATATGCCTGTTAACAATAGAAGCTTAGGAAGAGAAGAAAACTCAGCCGTCCCGACTGCCTCGATCAATATTGGAGAATTTGGTGAATCGTCCACCGGAGAATTGGGTGGTCGGTCCGTGGCAGAAAGTGGAGATCAAAACAATTCTTTTGATGCTGATGAGCCTTTACAGAGACAAGAAATTTTCCCTAGAAGGACACGTTTCATTTGGACTGATGAATACCATCGAATATTTGTTGAGGCTGTTGATCGTTTAACACTTCAGAGTAAGTGTTAA
Homology
[Close]
BLAST of CSPI07G17880 vs. TrEMBL
Match: A0A0A0KB26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G405920 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.0e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MSDDLNNQPCTSPHHFWLTDMPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVA 60
           MSDDLNNQPCTSPHHFWLTDMPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVA
Sbjct: 1   MSDDLNNQPCTSPHHFWLTDMPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVA 60

Query: 61  ESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQ 108
           ESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQ
Sbjct: 61  ESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQ 107

[Close]
BLAST of CSPI07G17880 vs. NCBI nr
Match: gi|700189753|gb|KGN44986.1| (hypothetical protein Csa_7G405920 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 4.4e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MSDDLNNQPCTSPHHFWLTDMPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVA 60
           MSDDLNNQPCTSPHHFWLTDMPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVA
Sbjct: 1   MSDDLNNQPCTSPHHFWLTDMPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVA 60

Query: 61  ESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQ 108
           ESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQ
Sbjct: 61  ESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQ 107

The following BLAST results are available for this feature:
BLAST of CSPI07G17880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G17880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB26_CUCSA3.0e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G405920 PE=4 SV=1[more]
BLAST of CSPI07G17880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G17880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189753|gb|KGN44986.1|4.4e-55100.00hypothetical protein Csa_7G405920 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G17880.1CSPI07G17880.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 83..107
score: 4.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G17880Csa7G405920Cucumber (Chinese Long) v2cpicuB354
CSPI07G17880MELO3C015951Melon (DHL92) v3.5.1cpimeB540
CSPI07G17880MELO3C015951.2Melon (DHL92) v3.6.1cpimedB525
CSPI07G17880CsaV3_7G029680Cucumber (Chinese Long) v3cpicucB414
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G17880Cucumber (Chinese Long) v3cpicucB402
CSPI07G17880Watermelon (97103) v2cpiwmbB541
CSPI07G17880Watermelon (97103) v2cpiwmbB598
CSPI07G17880Wax gourdcpiwgoB658
CSPI07G17880Wax gourdcpiwgoB666
CSPI07G17880Wax gourdcpiwgoB703
CSPI07G17880Cucurbita maxima (Rimu)cmacpiB934
CSPI07G17880Wild cucumber (PI 183967)cpicpiB167
CSPI07G17880Cucumber (Gy14) v1cgycpiB106
CSPI07G17880Cucumber (Gy14) v1cgycpiB325
CSPI07G17880Cucurbita maxima (Rimu)cmacpiB392
CSPI07G17880Cucurbita moschata (Rifu)cmocpiB266
CSPI07G17880Cucurbita moschata (Rifu)cmocpiB381
CSPI07G17880Cucurbita moschata (Rifu)cmocpiB913
CSPI07G17880Cucumber (Chinese Long) v2cpicuB345
CSPI07G17880Melon (DHL92) v3.5.1cpimeB572
CSPI07G17880Watermelon (Charleston Gray)cpiwcgB555
CSPI07G17880Watermelon (Charleston Gray)cpiwcgB560
CSPI07G17880Watermelon (97103) v1cpiwmB587
CSPI07G17880Watermelon (97103) v1cpiwmB593
CSPI07G17880Cucurbita pepo (Zucchini)cpecpiB163
CSPI07G17880Cucurbita pepo (Zucchini)cpecpiB344
CSPI07G17880Bottle gourd (USVL1VR-Ls)cpilsiB517
CSPI07G17880Bottle gourd (USVL1VR-Ls)cpilsiB530
CSPI07G17880Melon (DHL92) v3.6.1cpimedB557
CSPI07G17880Cucumber (Gy14) v2cgybcpiB331
CSPI07G17880Silver-seed gourdcarcpiB0124
CSPI07G17880Silver-seed gourdcarcpiB0599
CSPI07G17880Silver-seed gourdcarcpiB0855