CSPI07G17270 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G17270
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 15705355 .. 15706946 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCAAAGAATCTAACAAACGAATGATACACTCCCTATGTTACATGCCCTGCCTTAGTTGTATTAACCCTCCATGGTGATTATAACTTTTCTCTCTTGGAGTACAAAAAATGCTTTGGGCAGTTTCTCCAAGCTTAAACTTCAACCTATGACATTAGAAAATGATTCACGCGTACTTTCCAACCTCTTGAAGCTCAACAGAACTTGACCCCAAATCCTTCTTCAGCCCTCTCTCTTTCATGATCTCTCTTACTTTCTCAACCTCACTCCATTTCCCCATTTCTGCATAAATATTAGATAACACAACATAATAACCACCATTCTCTGGTTCCATTTCAACAAGCTTCCTTGCTGCTATTTCACTCACTTCCAAGCTCCCATGAGCTCTGCTACCAGTTAGCAAAGACCCCCACATTGATCTGGTGGCTTCAAAAGGCATATCCTTTATCATCACACAAGCCTCTTCAATACACCCATTACGAGCCAAAATATCTACCATACATGAATAATGTTTGATTCCTGGAGAAAACCCGAACCTCCCGTGGATCAAAGACCAGAAGATCTGCCTGCCGCTGTTCACCAAGCCAGAATGGCTACAAGCAGAAAGCACTGCCACTAATGTCACGTCATCTGCTTCAACTCCTTCTTCATCCATTCTCTTAAACCAAGCAATGGCCTCCTCTCCACACTTGGCCGAAGCCAACCCATTAATGAATACATTCCATGTATACACATTCTTCTCTTTCATTGCTTGGAAAACAGCCAATGCCTCTTTGATTCTCCCACATTTCCCATACATATCAATCAAAGCAGTCCCTAATACCACATCCACTTCCCATCTTTTTGTCTTCACAAACTCATGTATCCAAACACCCATTTCAATAGCTCCAAAACTCGCACATGCAGCCAATGCATTGACTATCGTTACACGATTAGGCTCCACACCTGCATATTGCATCTGTTCAAACACAATCAAAGCATCATCCAACATGAAAGAAACTCTATAACCCATAATCAAAATAGTCCACGAGACAACATCTGTATGAAGCATTTCGTCGAACACCTTCTTGCATAACCCCATTTTCCCACAGGACGCATACACATCCATCAACGTATTCTGCACATAAAGATCAGAAGCATGTCCGGACTTGACAACGTGGGTATGAACAGATTGTCCACCGACAAGATCTTTGAAATCGGCTAATGACTTGAGAACAAAAGGGAAGGTGTAATTGTTGGGGGAAATGGAGTTTCTGTTCATGTGGGTGTAAAGGAAAAGAGGGGTATGGGGGATTTTGGAGTGAGAAAAAGCTCGGATTAAGGAATTGCAAATGAAGACATGGGGTTTGGGGATATGGGTAAAGAAGAGAAAAGCGGAACCGAGAAGATGAAGATGATGGCAAGTGTTAATGAAATGGTGGGCTATGAGTGGATGTGAATGGAGATTTTGAAGGATCAGTTGAGCTTGAATTTGAGGGATGTGAAGTGGGGAAAGAGAAGTGGTGAAAATAGAGAGAATTCTGGTTGATTCAGCTCTGAACTGGGTGCCAAATGCTCTCATTTGTCTAAATTGTTCATACCGCAAAATTTAGA

mRNA sequence

ATGGCCTCCTCTCCACACTTGGCCGAAGCCAACCCATTAATGAATACATTCCATGTATACACATTCTTCTCTTTCATTGCTTGGAAAACAGCCAATGCCTCTTTGATTCTCCCACATTTCCCATACATATCAATCAAAGCAGTCCCTAATACCACATCCACTTCCCATCTTTTTGTCTTCACAAACTCATGTATCCAAACACCCATTTCAATAGCTCCAAAACTCGCACATGCAGCCAATGCATTGACTATCGTTACACGATTAGGCTCCACACCTGCATATTGCATCTGTTCAAACACAATCAAAGCATCATCCAACATGAAAGAAACTCTATAA

Coding sequence (CDS)

ATGGCCTCCTCTCCACACTTGGCCGAAGCCAACCCATTAATGAATACATTCCATGTATACACATTCTTCTCTTTCATTGCTTGGAAAACAGCCAATGCCTCTTTGATTCTCCCACATTTCCCATACATATCAATCAAAGCAGTCCCTAATACCACATCCACTTCCCATCTTTTTGTCTTCACAAACTCATGTATCCAAACACCCATTTCAATAGCTCCAAAACTCGCACATGCAGCCAATGCATTGACTATCGTTACACGATTAGGCTCCACACCTGCATATTGCATCTGTTCAAACACAATCAAAGCATCATCCAACATGAAAGAAACTCTATAA
Homology
[Close]
BLAST of CSPI07G17270 vs. TrEMBL
Match: A0A0P0XAF9_ORYSJ (Os07g0662550 protein OS=Oryza sativa subsp. japonica GN=Os07g0662550 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.5e-06
Identity = 39/98 (39.80%), Postives = 50/98 (51.02%), Query Frame = 1 

Query: 10  ANPLMNTFHVYTFFSFIAWKTANASLILPHFPYISIKAVPNTTS--TSHLFVFTNSCIQT 69
           A PL+  FHV  F       T+ AS   PH  Y+S  AVP  +S     LF+ T + I  
Sbjct: 2   AKPLIMAFHVQVFLDLNLVNTSRASSTAPHLAYMSSSAVPRNSSHHRKSLFLSTKAWIHF 61

Query: 70  PISIAPKLAHAANALTIVTRLGSTPAYCICSNTIKASS 106
           P+S AP  AHAA+AL  V R G+ P+  I      AS+
Sbjct: 62  PVSSAPAPAHAASALRTVPRFGAKPSAIIRRKRHSAST 99

[Close]
BLAST of CSPI07G17270 vs. NCBI nr
Match: gi|937928154|dbj|BAT03071.1| (Os07g0662550 [Oryza sativa Japonica Group])

HSP 1 Score: 58.9 bits (141), Expect = 6.5e-06
Identity = 39/98 (39.80%), Postives = 50/98 (51.02%), Query Frame = 1 

Query: 10  ANPLMNTFHVYTFFSFIAWKTANASLILPHFPYISIKAVPNTTS--TSHLFVFTNSCIQT 69
           A PL+  FHV  F       T+ AS   PH  Y+S  AVP  +S     LF+ T + I  
Sbjct: 2   AKPLIMAFHVQVFLDLNLVNTSRASSTAPHLAYMSSSAVPRNSSHHRKSLFLSTKAWIHF 61

Query: 70  PISIAPKLAHAANALTIVTRLGSTPAYCICSNTIKASS 106
           P+S AP  AHAA+AL  V R G+ P+  I      AS+
Sbjct: 62  PVSSAPAPAHAASALRTVPRFGAKPSAIIRRKRHSAST 99

The following BLAST results are available for this feature:
BLAST of CSPI07G17270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G17270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0P0XAF9_ORYSJ4.5e-0639.80Os07g0662550 protein OS=Oryza sativa subsp. japonica GN=Os07g0662550 PE=4 SV=1[more]
BLAST of CSPI07G17270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G17270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|937928154|dbj|BAT03071.1|6.5e-0639.80Os07g0662550 [Oryza sativa Japonica Group][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G17270.1CSPI07G17270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G17270Cucurbita pepo (Zucchini)cpecpiB163
CSPI07G17270Cucurbita pepo (Zucchini)cpecpiB344
CSPI07G17270Bottle gourd (USVL1VR-Ls)cpilsiB517
CSPI07G17270Bottle gourd (USVL1VR-Ls)cpilsiB530
CSPI07G17270Melon (DHL92) v3.6.1cpimedB525
CSPI07G17270Melon (DHL92) v3.6.1cpimedB557
CSPI07G17270Cucumber (Gy14) v2cgybcpiB331
CSPI07G17270Silver-seed gourdcarcpiB0124
CSPI07G17270Silver-seed gourdcarcpiB0896
CSPI07G17270Cucumber (Chinese Long) v3cpicucB402
CSPI07G17270Cucumber (Chinese Long) v3cpicucB414
CSPI07G17270Watermelon (97103) v2cpiwmbB541
CSPI07G17270Watermelon (97103) v2cpiwmbB564
CSPI07G17270Watermelon (97103) v2cpiwmbB598
CSPI07G17270Wax gourdcpiwgoB658
CSPI07G17270Wax gourdcpiwgoB666
CSPI07G17270Wax gourdcpiwgoB703
CSPI07G17270Cucurbita maxima (Rimu)cmacpiB934
CSPI07G17270Wild cucumber (PI 183967)cpicpiB167
CSPI07G17270Cucumber (Gy14) v1cgycpiB106
CSPI07G17270Cucumber (Gy14) v1cgycpiB325
CSPI07G17270Cucurbita maxima (Rimu)cmacpiB392
CSPI07G17270Cucurbita moschata (Rifu)cmocpiB381
CSPI07G17270Cucurbita moschata (Rifu)cmocpiB913
CSPI07G17270Cucumber (Chinese Long) v2cpicuB345
CSPI07G17270Cucumber (Chinese Long) v2cpicuB354
CSPI07G17270Melon (DHL92) v3.5.1cpimeB540
CSPI07G17270Melon (DHL92) v3.5.1cpimeB572
CSPI07G17270Watermelon (Charleston Gray)cpiwcgB555
CSPI07G17270Watermelon (Charleston Gray)cpiwcgB560
CSPI07G17270Watermelon (97103) v1cpiwmB587
CSPI07G17270Watermelon (97103) v1cpiwmB593