CSPI07G17180 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G17180
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Zinc finger protein
Location	Chr7 : 15640055 .. 15640477 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTTTGCAGAAGGGACAGCTTCATCACCCACAGAGCCTTTTGCAATGCATTAACAGAAGAAAGCAACAAACTAAAGCAAGGAATTCTCAACAACAACAACAATAACAATAACATAGAACCAATCTCAATTATCTCCACTCCAAAGCTTCCTCATTTTGGCACATCAATCATGCCTGAATTCAACCCTTACGATCAAAAAAACCCTTTCAAAACCCTTCCCCAAGAACTCAACAACTCGACCCCCACCACCACCACAGGTGCACCCGGAGGGTTGTTTATGGTCGGACCCAGAAGCAACAACAATTCTTCCTCTTTCTCAAGCCTTAAGCTCAGCTCCACCACCTCTTCGCGCTTTAGTTGTCTTTATGATAGTAAAAATGGCTGCCTTCAGGTAAGGGCGAAGCAAAGAAGAAATTAA

mRNA sequence

ATGTTTCTTTGCAGAAGGGACAGCTTCATCACCCACAGAGCCTTTTGCAATGCATTAACAGAAGAAAGCAACAAACTAAAGCAAGGAATTCTCAACAACAACAACAATAACAATAACATAGAACCAATCTCAATTATCTCCACTCCAAAGCTTCCTCATTTTGGCACATCAATCATGCCTGAATTCAACCCTTACGATCAAAAAAACCCTTTCAAAACCCTTCCCCAAGAACTCAACAACTCGACCCCCACCACCACCACAGGTGCACCCGGAGGGTTGTTTATGGTCGGACCCAGAAGCAACAACAATTCTTCCTCTTTCTCAAGCCTTAAGCTCAGCTCCACCACCTCTTCGCGCTTTAGTTGTCTTTATGATAGTAAAAATGGCTGCCTTCAGGTAAGGGCGAAGCAAAGAAGAAATTAA

Coding sequence (CDS)

ATGTTTCTTTGCAGAAGGGACAGCTTCATCACCCACAGAGCCTTTTGCAATGCATTAACAGAAGAAAGCAACAAACTAAAGCAAGGAATTCTCAACAACAACAACAATAACAATAACATAGAACCAATCTCAATTATCTCCACTCCAAAGCTTCCTCATTTTGGCACATCAATCATGCCTGAATTCAACCCTTACGATCAAAAAAACCCTTTCAAAACCCTTCCCCAAGAACTCAACAACTCGACCCCCACCACCACCACAGGTGCACCCGGAGGGTTGTTTATGGTCGGACCCAGAAGCAACAACAATTCTTCCTCTTTCTCAAGCCTTAAGCTCAGCTCCACCACCTCTTCGCGCTTTAGTTGTCTTTATGATAGTAAAAATGGCTGCCTTCAGGTAAGGGCGAAGCAAAGAAGAAATTAA

Homology

[Close]

BLAST of CSPI07G17180 vs. TrEMBL
Match: A0A0A0K5A7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G395230 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.6e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MFLCRRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFGTSIMP 60
           MFLCRRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFGTSIMP
Sbjct: 1   MFLCRRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFGTSIMP 60

Query: 61  EFNPYDQKNPFKTLPQELNNSTPTTTTGAPGGLFMVGPRSNNNSSSFSSLKLSSTTSSRF 120
           EFNPYDQKNPFKTLPQELNNSTPTTTTGAPGGLFMVGPRSNNNSSSFSSLKLSSTTSSRF
Sbjct: 61  EFNPYDQKNPFKTLPQELNNSTPTTTTGAPGGLFMVGPRSNNNSSSFSSLKLSSTTSSRF 120

Query: 121 SCLYDSKNGCLQVRAKQRRN 141
           SCLYDSKNGCLQVRAKQRRN
Sbjct: 121 SCLYDSKNGCLQVRAKQRRN 140

[Close]

BLAST of CSPI07G17180 vs. TrEMBL
Match: A0A061DSA6_THECC (Indeterminate(ID)-domain 2 OS=Theobroma cacao GN=TCM_004569 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.3e-17
Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = 1


Query: 5   RRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFGTSI-MPEFN 64
           RRDSFITHRAFC+AL EE+NK+ QG++N+  +N   +   ++S+  + +  TS+ + +FN
Sbjct: 204 RRDSFITHRAFCDALAEENNKVNQGLMNHMGSNLQNQMPELMSSMPISNANTSMGISDFN 263

Query: 65  PYDQKNPFKTLPQELNNSTPTTTTGAPGGLF-------MVGPRSNNNSSSFSSLKLSSTT 124
            +D KNP K+LPQEL    P  +    GG+F         GPRS   S++ SSL+LSS +
Sbjct: 264 NFDPKNPLKSLPQEL-VPMPFKSMNMGGGMFSSSSGTLFGGPRS--ISAASSSLQLSSNS 323

Query: 125 SSRFSCLYDSKNGC 131
           SS F+ L DSKNGC
Sbjct: 324 SSGFNYLQDSKNGC 334

[Close]

BLAST of CSPI07G17180 vs. TrEMBL
Match: A0A067HHA2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010444mg PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-16
Identity = 69/145 (47.59%), Postives = 87/145 (60.00%), Query Frame = 1


Query: 5   RRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFG--TSI-MPE 64
           RRDSFITHRAFC+AL EE+NK+ QG+++N   N   +   ++S+  L   G  TS+ M E
Sbjct: 119 RRDSFITHRAFCDALAEENNKVNQGLMDNLGQNMQSQMPELMSSMPLNTGGNNTSLGMSE 178

Query: 65  FNPYDQKNPFKTLPQEL--------NNSTPTTTTGAPGGLF-------MVGPRSNNNSSS 124
           FN +D KNP K+LPQ+L        N        G  GG+F         GPRS   SSS
Sbjct: 179 FNNFDPKNPMKSLPQDLVPMPFKSVNMGGGGGGGGGGGGMFSSSSGTLFGGPRS--ISSS 238

Query: 125 FSSLKLSSTTSSRFSCLYDSKNGCL 132
            SSL+LSS +SS F+ L DSKNGCL
Sbjct: 239 SSSLQLSSNSSSGFNYLQDSKNGCL 261

[Close]

BLAST of CSPI07G17180 vs. TrEMBL
Match: V4VW00_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023420mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-16
Identity = 68/143 (47.55%), Postives = 87/143 (60.84%), Query Frame = 1


Query: 5   RRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFG--TSI-MPE 64
           RRDSFITHRAFC+AL EE+NK+ QG+++N   N   +   ++S+  L   G  TS+ M E
Sbjct: 178 RRDSFITHRAFCDALAEENNKVNQGLMDNLGQNMQSQMPELMSSMPLNTGGNNTSLGMSE 237

Query: 65  FNPYDQKNPFKTLPQELNNSTPTTTT------GAPGGLF-------MVGPRSNNNSSSFS 124
           FN +D KNP K+LPQ+L      +        G  GG+F         GPRS   SSS S
Sbjct: 238 FNNFDPKNPMKSLPQDLVPMPFKSVNMGGGGGGGGGGMFSSSSGTLFGGPRS--ISSSSS 297

Query: 125 SLKLSSTTSSRFSCLYDSKNGCL 132
           SL+LSS +SS F+ L DSKNGCL
Sbjct: 298 SLQLSSNSSSGFNYLQDSKNGCL 318

[Close]

BLAST of CSPI07G17180 vs. TrEMBL
Match: B9S3T6_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0555270 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-16
Identity = 64/135 (47.41%), Postives = 84/135 (62.22%), Query Frame = 1


Query: 4   CRRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFGTSI-MPEF 63
           CRRDSFITHRAFC+AL EE+NK+ QG+  ++  N   E +S  S P   +  TSI + +F
Sbjct: 254 CRRDSFITHRAFCDALAEENNKVNQGLTGSHLQNQMPELMS--SMPLTTNTNTSIGISDF 313

Query: 64  NPYDQKNPFKTLPQELNNSTPTTTTGAPGGLF-------MVGPRSNNNSSSFSSLKLSST 123
           N +D KNP K+LPQEL    P  +    GG+F         GPRS   +S+ SSL+LSS 
Sbjct: 314 NSFDPKNPLKSLPQEL-VPMPFKSMNMAGGMFSSSSGTLFGGPRS--IASTSSSLQLSSN 373

Query: 124 TSSRFSCLYDSKNGC 131
           +SS ++ L D KNGC
Sbjct: 374 SSSGYNYLQDGKNGC 383

[Close]

BLAST of CSPI07G17180 vs. TAIR10
Match: AT3G13810.2 (AT3G13810.2 indeterminate(ID)-domain 11)

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-06
Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = 1


Query: 5   RRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFGTSIMPEFN 64
           RRDSFITHRAFC AL EE+   ++ ++  N NNN   P+ I  +   PH      P  N
Sbjct: 214 RRDSFITHRAFCEALAEET--AREVVIPQNQNNNQPNPLLIHQSASHPHHHHQTQPTIN 270

[Close]

BLAST of CSPI07G17180 vs. NCBI nr
Match: gi|700189672|gb|KGN44905.1| (hypothetical protein Csa_7G395230 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 2.2e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MFLCRRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFGTSIMP 60
           MFLCRRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFGTSIMP
Sbjct: 1   MFLCRRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFGTSIMP 60

Query: 61  EFNPYDQKNPFKTLPQELNNSTPTTTTGAPGGLFMVGPRSNNNSSSFSSLKLSSTTSSRF 120
           EFNPYDQKNPFKTLPQELNNSTPTTTTGAPGGLFMVGPRSNNNSSSFSSLKLSSTTSSRF
Sbjct: 61  EFNPYDQKNPFKTLPQELNNSTPTTTTGAPGGLFMVGPRSNNNSSSFSSLKLSSTTSSRF 120

Query: 121 SCLYDSKNGCLQVRAKQRRN 141
           SCLYDSKNGCLQVRAKQRRN
Sbjct: 121 SCLYDSKNGCLQVRAKQRRN 140

[Close]

BLAST of CSPI07G17180 vs. NCBI nr
Match: gi|449436797|ref|XP_004136179.1| (PREDICTED: protein indeterminate-domain 2-like [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 3.5e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 5   RRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFGTSIMPEFNP 64
           RRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFGTSIMPEFNP
Sbjct: 192 RRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFGTSIMPEFNP 251

Query: 65  YDQKNPFKTLPQELNNSTPTTTTGAPGGLFMVGPRSNNNSSSFSSLKLSSTTSSRFSCLY 124
           YDQKNPFKTLPQELNNSTPTTTTGAPGGLFMVGPRSNNNSSSFSSLKLSSTTSSRFSCLY
Sbjct: 252 YDQKNPFKTLPQELNNSTPTTTTGAPGGLFMVGPRSNNNSSSFSSLKLSSTTSSRFSCLY 311

Query: 125 DSKNGCLQ 133
           DSKNGCLQ
Sbjct: 312 DSKNGCLQ 319

[Close]

BLAST of CSPI07G17180 vs. NCBI nr
Match: gi|659101550|ref|XP_008451665.1| (PREDICTED: zinc finger protein NUTCRACKER-like [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 5.0e-56
Identity = 118/129 (91.47%), Postives = 122/129 (94.57%), Query Frame = 1


Query: 5   RRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFGTSIMPEFNP 64
           RRDSFITHRAFCNALTEESNKLKQGIL++NNNNNNIEPISIISTPKLPHFGTSIMPEFNP
Sbjct: 193 RRDSFITHRAFCNALTEESNKLKQGILSSNNNNNNIEPISIISTPKLPHFGTSIMPEFNP 252

Query: 65  YDQKNPFKTLPQELNNSTPTTTTGAPGGLFMVGP-RSNNNSSSFSSLKLSSTTSSRFSCL 124
           YDQK PFK+LPQELNNSTP  TTGAPGGLFM G  R+NNNSSS SSLKLSSTTSSRFSCL
Sbjct: 253 YDQKTPFKSLPQELNNSTP--TTGAPGGLFMGGHYRNNNNSSSLSSLKLSSTTSSRFSCL 312

Query: 125 YDSKNGCLQ 133
           YDSKNGCLQ
Sbjct: 313 YDSKNGCLQ 319

[Close]

BLAST of CSPI07G17180 vs. NCBI nr
Match: gi|764642500|ref|XP_011470993.1| (PREDICTED: protein indeterminate-domain 2-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 95.5 bits (236), Expect = 7.8e-17
Identity = 71/146 (48.63%), Postives = 84/146 (57.53%), Query Frame = 1


Query: 5   RRDSFITHRAFCNALTEESNKLKQG-ILNNNNNNNNIEPISIIS-----TPKLPHFGTSI 64
           RRDSFITHRAFC+AL EE+NK+  G I+NNN   +N  P  +IS     T      G   
Sbjct: 206 RRDSFITHRAFCDALAEENNKVNHGLIMNNNMGTHNQMPDHLISSMPMNTNTSMGIGAGA 265

Query: 65  MPEFNPYDQKNPFKTLPQEL----NNSTPTTTTGAPGGLFMV-------GPRS-NNNSSS 124
           + E+N YD KNP K+LP EL      S   T   A GG+F         G RS NNNSS+
Sbjct: 266 ISEYNNYDPKNPLKSLPDELVPMPFKSIMNTNLPAGGGMFSTSSGSLFGGSRSVNNNSST 325

Query: 125 FSSLKLSSTTSSR--FSCLYDSKNGC 131
            SSL+LSS  SS   F+ L DSKNGC
Sbjct: 326 SSSLQLSSNNSSSAGFNYLQDSKNGC 351

[Close]

BLAST of CSPI07G17180 vs. NCBI nr
Match: gi|590718511|ref|XP_007050834.1| (Indeterminate(ID)-domain 2 [Theobroma cacao])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = 1


Query: 5   RRDSFITHRAFCNALTEESNKLKQGILNNNNNNNNIEPISIISTPKLPHFGTSI-MPEFN 64
           RRDSFITHRAFC+AL EE+NK+ QG++N+  +N   +   ++S+  + +  TS+ + +FN
Sbjct: 204 RRDSFITHRAFCDALAEENNKVNQGLMNHMGSNLQNQMPELMSSMPISNANTSMGISDFN 263

Query: 65  PYDQKNPFKTLPQELNNSTPTTTTGAPGGLF-------MVGPRSNNNSSSFSSLKLSSTT 124
            +D KNP K+LPQEL    P  +    GG+F         GPRS   S++ SSL+LSS +
Sbjct: 264 NFDPKNPLKSLPQEL-VPMPFKSMNMGGGMFSSSSGTLFGGPRS--ISAASSSLQLSSNS 323

Query: 125 SSRFSCLYDSKNGC 131
           SS F+ L DSKNGC
Sbjct: 324 SSGFNYLQDSKNGC 334

The following BLAST results are available for this feature:

BLAST of CSPI07G17180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G17180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5A7_CUCSA	1.6e-72	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G395230 PE=4 SV=1	[more]
A0A061DSA6_THECC	9.3e-17	46.27	Indeterminate(ID)-domain 2 OS=Theobroma cacao GN=TCM_004569 PE=4 SV=1	[more]
A0A067HHA2_CITSI	1.2e-16	47.59	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010444mg PE=4 SV=1	[more]
V4VW00_9ROSI	1.6e-16	47.55	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023420mg PE=4 SV=1	[more]
B9S3T6_RICCO	3.5e-16	47.41	Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0555270 PE=4 ...	[more]

BLAST of CSPI07G17180 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13810.2	1.7e-06	44.07	indeterminate(ID)-domain 11	[more]

BLAST of CSPI07G17180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189672\|gb\|KGN44905.1\|	2.2e-72	100.00	hypothetical protein Csa_7G395230 [Cucumis sativus]	[more]
gi\|449436797\|ref\|XP_004136179.1\|	3.5e-65	100.00	PREDICTED: protein indeterminate-domain 2-like [Cucumis sativus]	[more]
gi\|659101550\|ref\|XP_008451665.1\|	5.0e-56	91.47	PREDICTED: zinc finger protein NUTCRACKER-like [Cucumis melo]	[more]
gi\|764642500\|ref\|XP_011470993.1\|	7.8e-17	48.63	PREDICTED: protein indeterminate-domain 2-like [Fragaria vesca subsp. vesca]	[more]
gi\|590718511\|ref\|XP_007050834.1\|	1.3e-16	46.27	Indeterminate(ID)-domain 2 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G17180.1	CSPI07G17180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10593	SERINE/THREONINE-PROTEIN KINASE RIO	coord: 5..135 score: 5.8
None	No IPR available	PANTHER	PTHR10593:SF34	SUBFAMILY NOT NAMED	coord: 5..135 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G17180	Csa7G395230	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G17180	CsaV3_7G028960	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G17180	Cla97C09G168750	Watermelon (97103) v2	cpiwmbB598
CSPI07G17180	Cucsa.025360	Cucumber (Gy14) v1	cgycpiB548
CSPI07G17180	CsGy7G015610	Cucumber (Gy14) v2	cgybcpiB331

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G17180	Cucurbita maxima (Rimu)	cmacpiB392
CSPI07G17180	Cucurbita moschata (Rifu)	cmocpiB381
CSPI07G17180	Cucurbita moschata (Rifu)	cmocpiB913
CSPI07G17180	Melon (DHL92) v3.5.1	cpimeB540
CSPI07G17180	Watermelon (Charleston Gray)	cpiwcgB555
CSPI07G17180	Watermelon (97103) v1	cpiwmB587
CSPI07G17180	Cucurbita pepo (Zucchini)	cpecpiB163
CSPI07G17180	Cucurbita pepo (Zucchini)	cpecpiB344
CSPI07G17180	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G17180	Melon (DHL92) v3.6.1	cpimedB525
CSPI07G17180	Silver-seed gourd	carcpiB0124
CSPI07G17180	Silver-seed gourd	carcpiB0896
CSPI07G17180	Watermelon (97103) v2	cpiwmbB564
CSPI07G17180	Wax gourd	cpiwgoB662
CSPI07G17180	Wax gourd	cpiwgoB666
CSPI07G17180	Cucurbita maxima (Rimu)	cmacpiB934