CSPI07G15710 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G15710
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	PPR containing plant-like protein
Location	Chr7 : 14353145 .. 14353534 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGGTGAATCCAATATGGGAACTGCACACAGAAGGTGTTCAATAGATTGCTTCAAAGAGATGTGTTTGTGTGGAATGTGGTTGTACAGGGGTATGCAAATTTGGGTCCGTTTGTTGAAGCTCTTAACCTATTTGATCATGAAATGCGAGTCAGTGGGGCACCCACAAATCGCTATACATTTCCTTTTGTGATGAAGGCATGTGGTGCAAAGAAGAACAGTGACAAGGGTGAGATTGTTCATGGACATGTTTTGAAATGTGCGTTGGACTTGGATTTATCTGTGGGTAATGATCTGATCACGTTTTATTCCAAATGTACTCACAGGAAGTTCAAACTGCTAGTAAAGTGTTTGATGATATGCCTCTGATATACGTTGTGAGTTAG

mRNA sequence

ATGGTGAAGGGGTATGCAAATTTGGGTCCGTTTGTTGAAGCTCTTAACCTATTTGATCATGAAATGCGAGTCAGTGGGGCACCCACAAATCGCTATACATTTCCTTTTGTGATGAAGGCATGTGGTGCAAAGAAGAACAGTGACAAGGGTGAGATTGTTCATGGACATGTTTTGAAATGTGCGTTGGACTTGGATTTATCTGAAGTTCAAACTGCTAGTAAAGTGTTTGATGATATGCCTCTGATATACGTTGTGAGTTAG

Coding sequence (CDS)

ATGGTGAAGGGGTATGCAAATTTGGGTCCGTTTGTTGAAGCTCTTAACCTATTTGATCATGAAATGCGAGTCAGTGGGGCACCCACAAATCGCTATACATTTCCTTTTGTGATGAAGGCATGTGGTGCAAAGAAGAACAGTGACAAGGGTGAGATTGTTCATGGACATGTTTTGAAATGTGCGTTGGACTTGGATTTATCTGAAGTTCAAACTGCTAGTAAAGTGTTTGATGATATGCCTCTGATATACGTTGTGAGTTAG

Homology

[Close]

BLAST of CSPI07G15710 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.3e-09
Identity = 38/99 (38.38%), Postives = 50/99 (50.51%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
           M +G+A     V AL L+   + +   P N YTFPFV+K+C   K   +G+ +HGHVLK 
Sbjct: 105 MFRGHALSSDPVSALKLYVCMISLGLLP-NSYTFPFVLKSCAKSKAFKEGQQIHGHVLKL 164

Query: 61  ALDLDL-------------SEVQTASKVFDDMPLIYVVS 87
             DLDL               ++ A KVFD  P   VVS
Sbjct: 165 GCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVS 202

[Close]

BLAST of CSPI07G15710 vs. Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-08
Identity = 32/99 (32.32%), Postives = 52/99 (52.53%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
           +V GYA  G F EA+ L+   + V G   + YTFP V++ CG   +  +G+ VH HV++ 
Sbjct: 166 LVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRY 225

Query: 61  ALDLDL-------------SEVQTASKVFDDMPLIYVVS 87
             +LD+              +V++A  +FD MP   ++S
Sbjct: 226 GYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIIS 264

[Close]

BLAST of CSPI07G15710 vs. Swiss-Prot
Match: PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.4e-08
Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHV--- 60
           M++ YA+     +AL+L+ ++M  SG    +YT+PFV+KAC   +  D G+++H HV   
Sbjct: 74  MIRAYASNDFAEKALDLY-YKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCS 133

Query: 61  ------LKCALDLDL----SEVQTASKVFDDMP 81
                   C   +D      E++ A KVFD+MP
Sbjct: 134 DFATDMYVCTALVDFYAKCGELEMAIKVFDEMP 165

[Close]

BLAST of CSPI07G15710 vs. Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-06
Identity = 25/66 (37.88%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
           M++GY N+  F EAL  F +EM   G   + +T+P ++KAC   K+  +G+ +HG V K 
Sbjct: 103 MIRGYVNVMSFEEAL-CFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKL 162

Query: 61  ALDLDL 67
            L+ D+
Sbjct: 163 GLEADV 167

[Close]

BLAST of CSPI07G15710 vs. TrEMBL
Match: A0A0A0K4V2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G378390 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-41
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 1


Query: 1  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
          MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGA KNSDKGEIVHGH+LKC
Sbjct: 1  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGANKNSDKGEIVHGHILKC 60

Query: 61 ALDLDLSEVQTASKVFDDMPLIYVV 86
          ALDLDLSEVQTASKVFDDMPLIYV+
Sbjct: 61 ALDLDLSEVQTASKVFDDMPLIYVL 85

[Close]

BLAST of CSPI07G15710 vs. TrEMBL
Match: A0A0A0L101_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002500 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-29
Identity = 68/99 (68.69%), Postives = 77/99 (77.78%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
           +++GYA+LGPFVEALNLFD EMRVSG PTNRYTFPFV+KACGA KNSDKGEIVHGHV+KC
Sbjct: 105 VIQGYASLGPFVEALNLFD-EMRVSGEPTNRYTFPFVLKACGAMKNSDKGEIVHGHVVKC 164

Query: 61  ALDLDL-------------SEVQTASKVFDDMPLIYVVS 87
            LDLDL              +V+TA KVFDDM L  +VS
Sbjct: 165 GLDLDLFVGNALIAFYSKCQDVETARKVFDDMSLRDIVS 202

[Close]

BLAST of CSPI07G15710 vs. TrEMBL
Match: G7LAB1_MEDTR (PPR containing plant-like protein OS=Medicago truncatula GN=MTR_8g074780 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-18
Identity = 45/92 (48.91%), Postives = 66/92 (71.74%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
           ++KGYAN+GPF EAL++++  MR+SGA  NRYT+PFV+KACGA+++  KG I+HG+V+KC
Sbjct: 91  VIKGYANMGPFAEALHVYN-AMRLSGAAPNRYTYPFVLKACGAERDCLKGRIIHGNVVKC 150

Query: 61  ALDLDL-------------SEVQTASKVFDDM 80
            L+ DL              E++ + KVFD+M
Sbjct: 151 GLEFDLFVGNAFVAFYAKCKEIEASRKVFDEM 181

[Close]

BLAST of CSPI07G15710 vs. TrEMBL
Match: D7T1S2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0264g00110 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-18
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
           +++GYANLGPF+EALN++++ MR SG   NRYTFPFV+KACGA K+  KG+ +HGHV+K 
Sbjct: 78  IIQGYANLGPFMEALNIYEY-MRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVKH 137

Query: 61  ALDLDL-------------SEVQTASKVFD 78
            LDLDL             +E+  + +VFD
Sbjct: 138 GLDLDLFVGNALVAFYAKCNEIGASRRVFD 166

[Close]

BLAST of CSPI07G15710 vs. TrEMBL
Match: M5WJX7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021315mg PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.8e-18
Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
           +++GYAN+ PFVEAL +++  MR+SG P N+YT+PFV+KACGA K+   G+IVHGHV+KC
Sbjct: 120 VIQGYANVEPFVEALKMYNR-MRLSGVPANQYTYPFVLKACGAMKDGKHGQIVHGHVVKC 179

Query: 61  ALDLDL-------------SEVQTASKVFDDMP 81
            L  DL              E++ + +VFD++P
Sbjct: 180 GLHSDLFVGNALIALYSKCEEIEISRRVFDEIP 211

[Close]

BLAST of CSPI07G15710 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 3.6e-10
Identity = 38/99 (38.38%), Postives = 50/99 (50.51%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
           M +G+A     V AL L+   + +   P N YTFPFV+K+C   K   +G+ +HGHVLK 
Sbjct: 105 MFRGHALSSDPVSALKLYVCMISLGLLP-NSYTFPFVLKSCAKSKAFKEGQQIHGHVLKL 164

Query: 61  ALDLDL-------------SEVQTASKVFDDMPLIYVVS 87
             DLDL               ++ A KVFD  P   VVS
Sbjct: 165 GCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVS 202

[Close]

BLAST of CSPI07G15710 vs. TAIR10
Match: AT1G15510.1 (AT1G15510.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-09
Identity = 32/99 (32.32%), Postives = 52/99 (52.53%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
           +V GYA  G F EA+ L+   + V G   + YTFP V++ CG   +  +G+ VH HV++ 
Sbjct: 166 LVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRY 225

Query: 61  ALDLDL-------------SEVQTASKVFDDMPLIYVVS 87
             +LD+              +V++A  +FD MP   ++S
Sbjct: 226 GYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIIS 264

[Close]

BLAST of CSPI07G15710 vs. TAIR10
Match: AT3G16610.1 (AT3G16610.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-09
Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHV--- 60
           M++ YA+     +AL+L+ ++M  SG    +YT+PFV+KAC   +  D G+++H HV   
Sbjct: 74  MIRAYASNDFAEKALDLY-YKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCS 133

Query: 61  ------LKCALDLDL----SEVQTASKVFDDMP 81
                   C   +D      E++ A KVFD+MP
Sbjct: 134 DFATDMYVCTALVDFYAKCGELEMAIKVFDEMP 165

[Close]

BLAST of CSPI07G15710 vs. TAIR10
Match: AT3G61170.1 (AT3G61170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 4.4e-08
Identity = 27/69 (39.13%), Postives = 38/69 (55.07%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
           ++ GY   G  VEA NLF  EM+  G   N YT   V++ C +     +GE +HGH +K 
Sbjct: 96  LISGYCKSGSKVEAFNLF-WEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKT 155

Query: 61  ALDLDLSEV 70
             DLD++ V
Sbjct: 156 GFDLDVNVV 163

[Close]

BLAST of CSPI07G15710 vs. TAIR10
Match: AT1G31920.1 (AT1G31920.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 53.1 bits (126), Expect = 9.7e-08
Identity = 25/66 (37.88%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
           M++GY N+  F EAL  F +EM   G   + +T+P ++KAC   K+  +G+ +HG V K 
Sbjct: 103 MIRGYVNVMSFEEAL-CFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKL 162

Query: 61  ALDLDL 67
            L+ D+
Sbjct: 163 GLEADV 167

[Close]

BLAST of CSPI07G15710 vs. NCBI nr
Match: gi|700189517|gb|KGN44750.1| (hypothetical protein Csa_7G378390 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-41
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 1


Query: 1  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
          MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGA KNSDKGEIVHGH+LKC
Sbjct: 1  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGANKNSDKGEIVHGHILKC 60

Query: 61 ALDLDLSEVQTASKVFDDMPLIYVV 86
          ALDLDLSEVQTASKVFDDMPLIYV+
Sbjct: 61 ALDLDLSEVQTASKVFDDMPLIYVL 85

[Close]

BLAST of CSPI07G15710 vs. NCBI nr
Match: gi|778674677|ref|XP_011650274.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 4.2e-29
Identity = 68/99 (68.69%), Postives = 77/99 (77.78%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
           +++GYA+LGPFVEALNLFD EMRVSG PTNRYTFPFV+KACGA KNSDKGEIVHGHV+KC
Sbjct: 105 VIQGYASLGPFVEALNLFD-EMRVSGEPTNRYTFPFVLKACGAMKNSDKGEIVHGHVVKC 164

Query: 61  ALDLDL-------------SEVQTASKVFDDMPLIYVVS 87
            LDLDL              +V+TA KVFDDM L  +VS
Sbjct: 165 GLDLDLFVGNALIAFYSKCQDVETARKVFDDMSLRDIVS 202

[Close]

BLAST of CSPI07G15710 vs. NCBI nr
Match: gi|659096558|ref|XP_008449159.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 66/99 (66.67%), Postives = 75/99 (75.76%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
           +++GYA+ GPFVEALNLFD EMRVSG PTNRYTFPFV+KACGA KNSDKGEIVHG+V+KC
Sbjct: 105 VIQGYASFGPFVEALNLFD-EMRVSGEPTNRYTFPFVLKACGALKNSDKGEIVHGYVVKC 164

Query: 61  ALDLDL-------------SEVQTASKVFDDMPLIYVVS 87
            LDLDL              +V+TA KVFDDM L   VS
Sbjct: 165 GLDLDLFVGNALISCYSKCQDVETARKVFDDMSLRDTVS 202

[Close]

BLAST of CSPI07G15710 vs. NCBI nr
Match: gi|657960758|ref|XP_008371959.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Malus domestica])

HSP 1 Score: 108.6 bits (270), Expect = 5.5e-21
Identity = 48/93 (51.61%), Postives = 67/93 (72.04%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
           +++GYAN+GPFVEALN++D  MR+SG P NRYT+PFV+KACGA ++  +G IVHGHV+KC
Sbjct: 117 VIQGYANVGPFVEALNVYDR-MRLSGVPANRYTYPFVLKACGAMRDGKRGRIVHGHVVKC 176

Query: 61  ALDLDL-------------SEVQTASKVFDDMP 81
            LD DL              E++ + +VFD++P
Sbjct: 177 GLDXDLFVGNALIALYSKCEEIEISRRVFDEIP 208

[Close]

BLAST of CSPI07G15710 vs. NCBI nr
Match: gi|502153624|ref|XP_004509407.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cicer arietinum])

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-20
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 1


Query: 1   MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKC 60
           ++KGYAN+GPF EALN++D EMR+SG   NRYT+PFV+KACGA++   KG I+HGH +KC
Sbjct: 94  VIKGYANMGPFAEALNVYD-EMRLSGINLNRYTYPFVLKACGAERAFLKGRIIHGHAVKC 153

Query: 61  ALDLDL-------------SEVQTASKVFDDMPLIYVVS 87
            LD DL              EV+ + K+FD+MP   +VS
Sbjct: 154 GLDFDLFVCNAFVAFYAKCQEVEVSRKLFDEMPERDIVS 191

The following BLAST results are available for this feature:

BLAST of CSPI07G15710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPR21_ARATH	6.3e-09	38.38	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
PPR45_ARATH	2.4e-08	32.32	Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidop...	[more]
PP237_ARATH	5.4e-08	34.41	Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN...	[more]
PPR68_ARATH	1.7e-06	37.88	Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN...	[more]

BLAST of CSPI07G15710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4V2_CUCSA	1.5e-41	96.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G378390 PE=4 SV=1	[more]
A0A0A0L101_CUCSA	2.9e-29	68.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002500 PE=4 SV=1	[more]
G7LAB1_MEDTR	2.3e-18	48.91	PPR containing plant-like protein OS=Medicago truncatula GN=MTR_8g074780 PE=4 SV...	[more]
D7T1S2_VITVI	4.0e-18	51.11	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0264g00110 PE=4 SV=...	[more]
M5WJX7_PRUPE	6.8e-18	47.31	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021315mg PE=4 SV=1	[more]

BLAST of CSPI07G15710 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08070.1	3.6e-10	38.38	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G15510.1	1.4e-09	32.32	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G16610.1	3.0e-09	34.41	pentatricopeptide (PPR) repeat-containing protein	[more]
AT3G61170.1	4.4e-08	39.13	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G31920.1	9.7e-08	37.88	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CSPI07G15710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189517\|gb\|KGN44750.1\|	2.2e-41	96.47	hypothetical protein Csa_7G378390 [Cucumis sativus]	[more]
gi\|778674677\|ref\|XP_011650274.1\|	4.2e-29	68.69	PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-...	[more]
gi\|659096558\|ref\|XP_008449159.1\|	1.8e-27	66.67	PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-...	[more]
gi\|657960758\|ref\|XP_008371959.1\|	5.5e-21	51.61	PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-...	[more]
gi\|502153624\|ref\|XP_004509407.1\|	1.6e-20	51.52	PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G15710.1	CSPI07G15710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..80 score: 7.7
None	No IPR available	PANTHER	PTHR24015:SF883	SUBFAMILY NOT NAMED	coord: 1..80 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G15710	Csa7G378390	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G15710	CsaV3_7G027470	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G15710	CsGy7G014240	Cucumber (Gy14) v2	cgybcpiB331

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G15710	Wax gourd	cpiwgoB710
CSPI07G15710	Wax gourd	cpiwgoB717
CSPI07G15710	Cucurbita maxima (Rimu)	cmacpiB934
CSPI07G15710	Cucumber (Gy14) v1	cgycpiB574
CSPI07G15710	Cucurbita maxima (Rimu)	cmacpiB392
CSPI07G15710	Cucurbita moschata (Rifu)	cmocpiB381
CSPI07G15710	Cucurbita moschata (Rifu)	cmocpiB913
CSPI07G15710	Melon (DHL92) v3.5.1	cpimeB526
CSPI07G15710	Watermelon (Charleston Gray)	cpiwcgB554
CSPI07G15710	Watermelon (97103) v1	cpiwmB586
CSPI07G15710	Cucurbita pepo (Zucchini)	cpecpiB163
CSPI07G15710	Cucurbita pepo (Zucchini)	cpecpiB345
CSPI07G15710	Cucurbita pepo (Zucchini)	cpecpiB349
CSPI07G15710	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G15710	Melon (DHL92) v3.6.1	cpimedB513
CSPI07G15710	Silver-seed gourd	carcpiB0125
CSPI07G15710	Silver-seed gourd	carcpiB1022
CSPI07G15710	Watermelon (97103) v2	cpiwmbB597