CSPI07G15480 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G15480
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionU-box domain-containing protein 3
LocationChr7 : 14140181 .. 14141187 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTAGCTGGCCGTTCTTTGTCTGTGGCTGTTAGATTTCAAGAGCTGAATGCTGTGACAAATTTAAAGCTCTTCACAAGTGACCTGCGAGATTGTTTGGAAGTTGTTGGAGTCAGTATCATGCAGCTCGAGTTTAAATGTTGTTCAGGCATGTATAAATTTGAAAACGTTTATAACACATTTTATTTTTGATGTTTTTTCCTTTTTCTAAATAAATTGAGATGTTTGGAGTAGTAAACACTTAGCTAGCTCACACTTTTTTTTCTCTCTTATTTTGAAATATAAGTTTCTTGATTTTGATCCATCTTTTGTCATAATTTTCTAACTATTTGATAAGAATGATATTGACATTTAATGAACTGTCCAGAAATATCCTGAAGGTCTTCAATCATTGAAACAAGAAAGGACAGCTGGATCTACAGAAGCGGCTCTAATTAGTCAAAGAAGCATTGGCCCAAACTCTGAACATCTTCAAGCACTTCATTTGACGTCAAATCAAGAACTTCTGAAAAAGACTATAGCTGTTGAAAAGGAGAGGATCGATGTTGAATCCAACAATGCGAAGGAGGAACTACATCACATCATCCAGATTGTGGATCTAATTATATCCCATTCCTAACCATACAATTAAAGTCATGATATTGAATTGGTGCGATGAAAACAAATTGAAATTTTCCAGTTTATTATCATTGGTTTGGTTCAATTGTCTTAGCAGAATTTGAATCGAAGTGACAACTTTCATTATTTTACACGACAAGAGAAATGAGGACGTTTGTACTAGTTTAATTGCGAGAAATTCCAAGGCAAAACACAAGTTTCATAGGGTTATCATATTGCAAAAGTGCTTCTCTTGAAGCAGACAACTTCTATGGGATCAGCAGAGGGATATTCTTTGGCTACAAGATGTAATCCTTTTTATTCTTCTCTTGATACTCTCATTATGTACTTAGGCAAAACGTAGATGAGGTTCATACTTAATTGAATCCATGGGGCGTTCAGAAACA

mRNA sequence

ATGGAATTAGCTGGCCGTTCTTTGTCTGTGGCTGTTAGATTTCAAGAGCTGAATGCTGTGACAAATTTAAAGCTCTTCACAAGTGACCTGCGAGATTGTTTGGAAGTTGTTGGAAAATATCCTGAAGGTCTTCAATCATTGAAACAAGAAAGGACAGCTGGATCTACAGAAGCGGCTCTAATTAGTCAAAGAAGCATTGGCCCAAACTCTGAACATCTTCAAGCACTTCATTTGACGTCAAATCAAGAACTTCTGAAAAAGACTATAGCTGTTGAAAAGGAGAGGATCGATGTTGAATCCAACAATGCGAAGGAGGAACTACATCACATCATCCAGATTGTGGATCTAATTATATCCCATTCCTAA

Coding sequence (CDS)

ATGGAATTAGCTGGCCGTTCTTTGTCTGTGGCTGTTAGATTTCAAGAGCTGAATGCTGTGACAAATTTAAAGCTCTTCACAAGTGACCTGCGAGATTGTTTGGAAGTTGTTGGAAAATATCCTGAAGGTCTTCAATCATTGAAACAAGAAAGGACAGCTGGATCTACAGAAGCGGCTCTAATTAGTCAAAGAAGCATTGGCCCAAACTCTGAACATCTTCAAGCACTTCATTTGACGTCAAATCAAGAACTTCTGAAAAAGACTATAGCTGTTGAAAAGGAGAGGATCGATGTTGAATCCAACAATGCGAAGGAGGAACTACATCACATCATCCAGATTGTGGATCTAATTATATCCCATTCCTAA
Homology
[Close]
BLAST of CSPI07G15480 vs. TrEMBL
Match: A0A0A0K4T7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374730 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.7e-41
Identity = 98/113 (86.73%), Postives = 98/113 (86.73%), Query Frame = 1 

Query: 14  FQELNAVTNLKLFTSDLRDCLEVVG--------KYPEGLQSLKQERTAGSTEAALISQRS 73
           FQELNAVTN KLFTSDLRDCLEVVG        K   GLQSLKQERTA STEAALISQRS
Sbjct: 15  FQELNAVTNSKLFTSDLRDCLEVVGVSIMQLEFKCCSGLQSLKQERTARSTEAALISQRS 74

Query: 74  IGPNSEHLQALHLTSNQELLKKTIAVEKERIDVESNNAKEELHHIIQIVDLII 119
           IGPNSEHLQALHLTSNQELLKKTIAVEKERID ESNNA EELHHIIQIVDLII
Sbjct: 75  IGPNSEHLQALHLTSNQELLKKTIAVEKERIDAESNNATEELHHIIQIVDLII 127

[Close]
BLAST of CSPI07G15480 vs. TrEMBL
Match: A0A0A0K726_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374670 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.9e-22
Identity = 67/90 (74.44%), Postives = 72/90 (80.00%), Query Frame = 1 

Query: 34  LEVVGKYPEGLQSLKQERTAGSTEAALISQRS-IGPNSEHL----QALHLTSNQELLKKT 93
           L  V K  EGLQSLKQER + S E ALISQRS IGPNSEHL    +ALHLTSNQELLK+T
Sbjct: 127 LSAVQKCLEGLQSLKQERISDSIEEALISQRSGIGPNSEHLLKLIEALHLTSNQELLKET 186

Query: 94  IAVEKERIDVESNNAKEELHHIIQIVDLII 119
           IAVEKERI+   NNAKEELHHI QI+DLII
Sbjct: 187 IAVEKERINAARNNAKEELHHINQIMDLII 216

[Close]
BLAST of CSPI07G15480 vs. TrEMBL
Match: A0A061DNZ3_THECC (ARM repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_004020 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.2e-09
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 44  LQSLKQERTAGSTEAALISQRSIG-PNSEHL----QALHLTSNQELLKKTIAVEKERIDV 103
           ++ LKQER + + E AL SQR+   P  +HL    ++L+LTSNQELLK+T+AVEKER++ 
Sbjct: 137 IKCLKQERVSENIEEALRSQRNDAIPCPDHLVEVIKSLNLTSNQELLKETVAVEKERMNA 196

Query: 104 ESNNAKEELHHIIQIVDLI 118
           + NNAK +L  I QIVDLI
Sbjct: 197 QVNNAKGKLDQINQIVDLI 215

[Close]
BLAST of CSPI07G15480 vs. TrEMBL
Match: A0A061DQQ1_THECC (ARM repeat superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_004020 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.2e-09
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 44  LQSLKQERTAGSTEAALISQRSIG-PNSEHL----QALHLTSNQELLKKTIAVEKERIDV 103
           ++ LKQER + + E AL SQR+   P  +HL    ++L+LTSNQELLK+T+AVEKER++ 
Sbjct: 101 IKCLKQERVSENIEEALRSQRNDAIPCPDHLVEVIKSLNLTSNQELLKETVAVEKERMNA 160

Query: 104 ESNNAKEELHHIIQIVDLI 118
           + NNAK +L  I QIVDLI
Sbjct: 161 QVNNAKGKLDQINQIVDLI 179

[Close]
BLAST of CSPI07G15480 vs. TrEMBL
Match: B9H8N4_POPTR (Armadillo/beta-catenin repeat family protein OS=Populus trichocarpa GN=POPTR_0005s24700g PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 44/98 (44.90%), Postives = 57/98 (58.16%), Query Frame = 1 

Query: 25  LFTSDLRDCLEVVGKYPEGLQSLKQERTAGSTEAALIS-QRSIGPNSEHL----QALHLT 84
           L +S     L +V    + LQ LK E      E AL S    + P + HL    + L LT
Sbjct: 118 LQSSPSASTLTIVQHCMQELQGLKHETITELIEEALRSLSDDVSPCTNHLMKLTETLGLT 177

Query: 85  SNQELLKKTIAVEKERIDVESNNAKEELHHIIQIVDLI 118
           SNQELLK+++AVEKER++V+ N AK +L  I QIVDLI
Sbjct: 178 SNQELLKESVAVEKERMNVKVNKAKGDLDQIDQIVDLI 215

[Close]
BLAST of CSPI07G15480 vs. NCBI nr
Match: gi|700189497|gb|KGN44730.1| (hypothetical protein Csa_7G374730 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 6.7e-41
Identity = 98/113 (86.73%), Postives = 98/113 (86.73%), Query Frame = 1 

Query: 14  FQELNAVTNLKLFTSDLRDCLEVVG--------KYPEGLQSLKQERTAGSTEAALISQRS 73
           FQELNAVTN KLFTSDLRDCLEVVG        K   GLQSLKQERTA STEAALISQRS
Sbjct: 15  FQELNAVTNSKLFTSDLRDCLEVVGVSIMQLEFKCCSGLQSLKQERTARSTEAALISQRS 74

Query: 74  IGPNSEHLQALHLTSNQELLKKTIAVEKERIDVESNNAKEELHHIIQIVDLII 119
           IGPNSEHLQALHLTSNQELLKKTIAVEKERID ESNNA EELHHIIQIVDLII
Sbjct: 75  IGPNSEHLQALHLTSNQELLKKTIAVEKERIDAESNNATEELHHIIQIVDLII 127

[Close]
BLAST of CSPI07G15480 vs. NCBI nr
Match: gi|659100738|ref|XP_008451242.1| (PREDICTED: U-box domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 112.8 bits (281), Expect = 4.1e-22
Identity = 67/90 (74.44%), Postives = 73/90 (81.11%), Query Frame = 1 

Query: 34  LEVVGKYPEGLQSLKQERTAGSTEAALISQRS-IGPNSEHL----QALHLTSNQELLKKT 93
           L  V K  EGLQSLKQER + S E ALISQRS IGPNSEHL    +ALHLTSNQELLK+T
Sbjct: 127 LSAVQKCLEGLQSLKQERISDSIEEALISQRSGIGPNSEHLLKLIEALHLTSNQELLKET 186

Query: 94  IAVEKERIDVESNNAKEELHHIIQIVDLII 119
           IAVEKERI+ E NNAK+ELHHI QI+DLII
Sbjct: 187 IAVEKERINAERNNAKKELHHINQIMDLII 216

[Close]
BLAST of CSPI07G15480 vs. NCBI nr
Match: gi|778727334|ref|XP_011659243.1| (PREDICTED: U-box domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 7.0e-22
Identity = 67/90 (74.44%), Postives = 72/90 (80.00%), Query Frame = 1 

Query: 34  LEVVGKYPEGLQSLKQERTAGSTEAALISQRS-IGPNSEHL----QALHLTSNQELLKKT 93
           L  V K  EGLQSLKQER + S E ALISQRS IGPNSEHL    +ALHLTSNQELLK+T
Sbjct: 127 LSAVQKCLEGLQSLKQERISDSIEEALISQRSGIGPNSEHLLKLIEALHLTSNQELLKET 186

Query: 94  IAVEKERIDVESNNAKEELHHIIQIVDLII 119
           IAVEKERI+   NNAKEELHHI QI+DLII
Sbjct: 187 IAVEKERINAARNNAKEELHHINQIMDLII 216

[Close]
BLAST of CSPI07G15480 vs. NCBI nr
Match: gi|590715753|ref|XP_007050279.1| (ARM repeat superfamily protein isoform 2 [Theobroma cacao])

HSP 1 Score: 68.6 bits (166), Expect = 8.9e-09
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 44  LQSLKQERTAGSTEAALISQRSIG-PNSEHL----QALHLTSNQELLKKTIAVEKERIDV 103
           ++ LKQER + + E AL SQR+   P  +HL    ++L+LTSNQELLK+T+AVEKER++ 
Sbjct: 101 IKCLKQERVSENIEEALRSQRNDAIPCPDHLVEVIKSLNLTSNQELLKETVAVEKERMNA 160

Query: 104 ESNNAKEELHHIIQIVDLI 118
           + NNAK +L  I QIVDLI
Sbjct: 161 QVNNAKGKLDQINQIVDLI 179

[Close]
BLAST of CSPI07G15480 vs. NCBI nr
Match: gi|590715742|ref|XP_007050278.1| (ARM repeat superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 68.6 bits (166), Expect = 8.9e-09
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 44  LQSLKQERTAGSTEAALISQRSIG-PNSEHL----QALHLTSNQELLKKTIAVEKERIDV 103
           ++ LKQER + + E AL SQR+   P  +HL    ++L+LTSNQELLK+T+AVEKER++ 
Sbjct: 137 IKCLKQERVSENIEEALRSQRNDAIPCPDHLVEVIKSLNLTSNQELLKETVAVEKERMNA 196

Query: 104 ESNNAKEELHHIIQIVDLI 118
           + NNAK +L  I QIVDLI
Sbjct: 197 QVNNAKGKLDQINQIVDLI 215

The following BLAST results are available for this feature:
BLAST of CSPI07G15480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G15480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4T7_CUCSA4.7e-4186.73Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374730 PE=4 SV=1[more]
A0A0A0K726_CUCSA4.9e-2274.44Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374670 PE=4 SV=1[more]
A0A061DNZ3_THECC6.2e-0954.43ARM repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_004020 PE=4 S... [more]
A0A061DQQ1_THECC6.2e-0954.43ARM repeat superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_004020 PE=4 S... [more]
B9H8N4_POPTR1.3e-0644.90Armadillo/beta-catenin repeat family protein OS=Populus trichocarpa GN=POPTR_000... [more]
BLAST of CSPI07G15480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G15480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189497|gb|KGN44730.1|6.7e-4186.73hypothetical protein Csa_7G374730 [Cucumis sativus][more]
gi|659100738|ref|XP_008451242.1|4.1e-2274.44PREDICTED: U-box domain-containing protein 3 [Cucumis melo][more]
gi|778727334|ref|XP_011659243.1|7.0e-2274.44PREDICTED: U-box domain-containing protein 3 [Cucumis sativus][more]
gi|590715753|ref|XP_007050279.1|8.9e-0954.43ARM repeat superfamily protein isoform 2 [Theobroma cacao][more]
gi|590715742|ref|XP_007050278.1|8.9e-0954.43ARM repeat superfamily protein isoform 1 [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0004842 ubiquitin-protein transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G15480.1CSPI07G15480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G15480CsaV3_7G027270Cucumber (Chinese Long) v3cpicucB414
CSPI07G15480CsGy7G013980Cucumber (Gy14) v2cgybcpiB331
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G15480Watermelon (97103) v2cpiwmbB597
CSPI07G15480Wax gourdcpiwgoB717
CSPI07G15480Cucurbita maxima (Rimu)cmacpiB934
CSPI07G15480Cucumber (Gy14) v1cgycpiB574
CSPI07G15480Cucurbita maxima (Rimu)cmacpiB388
CSPI07G15480Cucurbita moschata (Rifu)cmocpiB377
CSPI07G15480Cucurbita moschata (Rifu)cmocpiB913
CSPI07G15480Cucumber (Chinese Long) v2cpicuB354
CSPI07G15480Melon (DHL92) v3.5.1cpimeB526
CSPI07G15480Watermelon (Charleston Gray)cpiwcgB554
CSPI07G15480Watermelon (97103) v1cpiwmB586
CSPI07G15480Cucurbita pepo (Zucchini)cpecpiB159
CSPI07G15480Cucurbita pepo (Zucchini)cpecpiB345
CSPI07G15480Bottle gourd (USVL1VR-Ls)cpilsiB517
CSPI07G15480Melon (DHL92) v3.6.1cpimedB513
CSPI07G15480Silver-seed gourdcarcpiB0013
CSPI07G15480Silver-seed gourdcarcpiB0099