CSPI07G14140 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G14140
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 12639778 .. 12640107 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTATATGATATCGACGACGATGCGTTCAATAAAGCGGGAGGAATGTCCTCGGTGTATGAAACTTTAGGTTAGTCACGTTACATAAATAATTAATTGTATAAACATGGAGTTGTATTTCTGATAGTGTTATGTTCTCGTAGATGTCTCTCAACCCAGTACTTGCACTCCTAAGAGACGACAGTACTTCAGGAACTTGGAGTTAGAGAGATACATACAGATGAATGGGAAGATCCCAATATCCATTGCCCTAGGAGTAGATAAGCCGATCTCGCCACATGATGTTCAGTTCAGGAACATGAGATACATTTTCAATCTGCTTCCTTAA

mRNA sequence

ATGCTCTATATGATATCGACGACGATGCGTTCAATAAAGCGGGAGGAATGTCCTCGGTATGTCTCTCAACCCAGTACTTGCACTCCTAAGAGACGACAGTACTTCAGGAACTTGGAGTTAGAGAGATACATACAGATGAATGGGAAGATCCCAATATCCATTGCCCTAGGAGTAGATAAGCCGATCTCGCCACATGATGTTCAGTTCAGGAACATGAGATACATTTTCAATCTGCTTCCTTAA

Coding sequence (CDS)

ATGCTCTATATGATATCGACGACGATGCGTTCAATAAAGCGGGAGGAATGTCCTCGGTATGTCTCTCAACCCAGTACTTGCACTCCTAAGAGACGACAGTACTTCAGGAACTTGGAGTTAGAGAGATACATACAGATGAATGGGAAGATCCCAATATCCATTGCCCTAGGAGTAGATAAGCCGATCTCGCCACATGATGTTCAGTTCAGGAACATGAGATACATTTTCAATCTGCTTCCTTAA
Homology
[Close]
BLAST of CSPI07G14140 vs. TrEMBL
Match: E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.5e-06
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 1 

Query: 22 SQPSTCTPKRRQYFRNLELERYIQMNGKIPISIALGVDKPISPHDVQF 70
          SQ +T TP+RR   R LELER++ +NG IP++IA G +KPISP+ V F
Sbjct: 32 SQQATPTPRRRAQSRLLELERHVAINGCIPMTIAPGAEKPISPYAVHF 79

[Close]
BLAST of CSPI07G14140 vs. NCBI nr
Match: gi|778665376|ref|XP_011648549.1| (PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-07
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 

Query: 26  TCTPKRRQYFRNLELERYIQMNGKIPISIALGVDKPISPHDVQF 70
           T T +RRQ+ RNLELERYI  NGKI ISI L  DKPISPH ++F
Sbjct: 725 TATLRRRQHSRNLELERYILQNGKILISIPLEGDKPISPHPIRF 768

The following BLAST results are available for this feature:
BLAST of CSPI07G14140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G14140 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GC72_CUCME9.5e-0656.25CACTA en-spm transposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of CSPI07G14140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G14140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778665376|ref|XP_011648549.1|5.5e-0768.18PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G14140.1CSPI07G14140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G14140Cucurbita pepo (Zucchini)cpecpiB159
CSPI07G14140Cucurbita pepo (Zucchini)cpecpiB341
CSPI07G14140Bottle gourd (USVL1VR-Ls)cpilsiB517
CSPI07G14140Melon (DHL92) v3.6.1cpimedB513
CSPI07G14140Cucumber (Gy14) v2cgybcpiB331
CSPI07G14140Silver-seed gourdcarcpiB0100
CSPI07G14140Silver-seed gourdcarcpiB0463
CSPI07G14140Cucumber (Chinese Long) v3cpicucB414
CSPI07G14140Watermelon (97103) v2cpiwmbB597
CSPI07G14140Wax gourdcpiwgoB706
CSPI07G14140Cucumber (Gy14) v1cgycpiB079
CSPI07G14140Cucurbita maxima (Rimu)cmacpiB388
CSPI07G14140Cucurbita maxima (Rimu)cmacpiB936
CSPI07G14140Cucurbita moschata (Rifu)cmocpiB377
CSPI07G14140Cucurbita moschata (Rifu)cmocpiB915
CSPI07G14140Cucumber (Chinese Long) v2cpicuB354
CSPI07G14140Melon (DHL92) v3.5.1cpimeB536
CSPI07G14140Melon (DHL92) v3.5.1cpimeB527
CSPI07G14140Watermelon (Charleston Gray)cpiwcgB554
CSPI07G14140Watermelon (97103) v1cpiwmB586