CSPI07G13930 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G13930
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Glycine-rich protein
Location	Chr7 : 12438141 .. 12438823 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCATTTAACCTCACATTTACTTCTCTCAACTGTCCCTCAACTCTCTTTCCCCTTTAAAACCCTATGCTCACACCTCCATTGGTCAACAACACATACAAAACACACAACTGTAAGTCTCCTAGACGAAGAATTAAGAAGAAGAAAATGGCCAAATTGTTCATTGCTTTGCTCCTCGCTCTTGTAGCCACTCATGCCCTAGCTAGACCTATTACGCCGGGCACCACCTTCGACGACCAAAAGAACTTCCTCACTTACGGTGGCCTCGGTGGCTACTCTGGCATTGGCAGCAATGGCCTCCCCTTTGGTGGGATGGGAGGTGTCATTGGAGGAACTGGGCCCGGTGGTCTCGGTGGTGGCCTCGGTGGCGCTACTGGAATCGGTGGACTTGGAGGCCCGGGAGGTGGAGCTGCCGGTGGACTCGGAAGCGGAGCTGGTGGTGGAGTTGGTATTGGCGGTGGTTCTGGTCTTGCTAATCCTTGAAGTTATTTTAATCTCGTTTTATTTCTACTCAAAACGTTGTTAGAGTGTGAAGTTTAGTTATTTTAATTTGCCTTAAGTGGACTAGTATGAATCTATGCATTTGTTATGTTTTCTTTCTTTAGTTCATCAGAATTTCATAAAAATTTATTGTTTGATGTTATGCTAACTCTACGTTGTTTTTAGTTGATTTTTAAATTGCCC

mRNA sequence

ATGCTCACACCTCCATTGGTCAACAACACATACAAAACACACAACTGTAAGTCTCCTAGACGAAGAATTAAGAAGAAGAAAATGGCCAAATTGTTCATTGCTTTGCTCCTCGCTCTTGTAGCCACTCATGCCCTAGCTAGACCTATTACGCCGGGCACCACCTTCGACGACCAAAAGAACTTCCTCACTTACGGTGGCCTCGGTGGCTACTCTGGCATTGGCAGCAATGGCCTCCCCTTTGGTGGGATGGGAGGTGTCATTGGAGGAACTGGGCCCGGTGGTCTCGGTGGTGGCCTCGGTGGCGCTACTGGAATCGGTGGACTTGGAGGCCCGGGAGGTGGAGCTGCCGGTGGACTCGGAAGCGGAGCTGGTGGTGGAGTTGGTATTGGCGGTGGTTCTGGTCTTGCTAATCCTTGA

Coding sequence (CDS)

ATGCTCACACCTCCATTGGTCAACAACACATACAAAACACACAACTGTAAGTCTCCTAGACGAAGAATTAAGAAGAAGAAAATGGCCAAATTGTTCATTGCTTTGCTCCTCGCTCTTGTAGCCACTCATGCCCTAGCTAGACCTATTACGCCGGGCACCACCTTCGACGACCAAAAGAACTTCCTCACTTACGGTGGCCTCGGTGGCTACTCTGGCATTGGCAGCAATGGCCTCCCCTTTGGTGGGATGGGAGGTGTCATTGGAGGAACTGGGCCCGGTGGTCTCGGTGGTGGCCTCGGTGGCGCTACTGGAATCGGTGGACTTGGAGGCCCGGGAGGTGGAGCTGCCGGTGGACTCGGAAGCGGAGCTGGTGGTGGAGTTGGTATTGGCGGTGGTTCTGGTCTTGCTAATCCTTGA

Homology

[Close]

BLAST of CSPI07G13930 vs. TrEMBL
Match: A0A0A0K6P3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336480 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-42
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 1


Query: 28  MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 87
           MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 88  GGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLANP 139
           GGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGL NP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLTNP 111

[Close]

BLAST of CSPI07G13930 vs. TrEMBL
Match: A0A0A0K9U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336450 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.3e-22
Identity = 87/132 (65.91%), Postives = 94/132 (71.21%), Query Frame = 1


Query: 28  MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 87
           MAKLF+ALLLALVATHALARP     TF DQKNFLTYGG+GGYSGIG+NGLPFGG+GG I
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 88  GGTG-----PGGLGGGLGGATGI----GGLGGPG------GGAAGGLGSGAGGGV----- 139
           GG G      GGLGGGLGG TGI    GGLGGPG      GG  GGLG G GGG+     
Sbjct: 61  GGGGLGGGLGGGLGGGLGGGTGIGGGLGGLGGPGGGFGGIGGTTGGLGGGLGGGLGGGLG 120

[Close]

BLAST of CSPI07G13930 vs. TrEMBL
Match: V7CWV7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G168900g PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.5e-14
Identity = 71/112 (63.39%), Postives = 79/112 (70.54%), Query Frame = 1


Query: 28  MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 87
           MAKL + +L+  +A    AR         DQKNFLTYGG+GGYSGIGSNGLPFGG+G  I
Sbjct: 1   MAKLCVLVLVLALAVATSARNAPTDAGLKDQKNFLTYGGVGGYSGIGSNGLPFGGVGAGI 60

Query: 88  GG--TGPGGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGV--GIGGGSGL 136
           GG     GGLGGGLGG TGIGGLGG  GG  GG+G G GGGV  GIGGGSG+
Sbjct: 61  GGGFGAGGGLGGGLGGTTGIGGLGGL-GGTGGGVGGGVGGGVGTGIGGGSGV 111

[Close]

BLAST of CSPI07G13930 vs. TrEMBL
Match: W9SB28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015162 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.0e-13
Identity = 69/113 (61.06%), Postives = 78/113 (69.03%), Query Frame = 1


Query: 30  KLFIALLLALVATHALARPITPGTT------FDDQKNFLTYGGLGGYSGIGSNGLPFGGM 89
           K  IAL+LAL   HA AR +   T        +DQKNFLTYGG+GGYSG+G+NGLPFGG 
Sbjct: 4   KWCIALVLALAVVHATARNVPAATPAKKDAGLNDQKNFLTYGGVGGYSGLGANGLPFGGF 63

Query: 90  GGVIGGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGV-GIGGGSGL 136
           G  +G  G GGLGGGLGG  GIGG GG GG  AGGLG G GGGV G G G+G+
Sbjct: 64  GAGVG--GGGGLGGGLGGGGGIGGFGGLGG--AGGLGGGGGGGVGGAGAGTGI 112

[Close]

BLAST of CSPI07G13930 vs. TrEMBL
Match: A0A061DNL5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_003087 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.8e-12
Identity = 62/103 (60.19%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 28  MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 87
           MAK    L+LALV   A AR +   +  +DQKNFLTYGG+GGYSGIG+NG+P GG+G V 
Sbjct: 1   MAKWSAVLVLALVVVQASARNVPNDSGLNDQKNFLTYGGVGGYSGIGANGMPIGGVGSVG 60

Query: 88  GGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIG 131
           G TG  G GG +GG  G+G  GGPGGGAA G+G GAGGG G G
Sbjct: 61  GITGLDGTGG-VGGLAGVGFGGGPGGGAAAGVGGGAGGGSGTG 102

[Close]

BLAST of CSPI07G13930 vs. TAIR10
Match: AT4G29030.1 (AT4G29030.1 Putative membrane lipoprotein)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-07
Identity = 58/113 (51.33%), Postives = 69/113 (61.06%), Query Frame = 1


Query: 28  MAKLFIALLLALVATHALA---RPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMG 87
           MAK F  + L      ALA   R +  G +  DQKN+L YGG  GYSG+G NGLPFGG+G
Sbjct: 1   MAKWFFTIFLVFALASALACGARNVPVGLS--DQKNYLGYGG--GYSGVGDNGLPFGGVG 60

Query: 88  GVIGGTGPGGLGGGLGGATGIGGLGGPGGGAAGGL--GSGAGGGVGIGGGSGL 136
           G  G +GPGG         G GG GG GGG  GGL  G+G+G G G+GGGSG+
Sbjct: 61  G--GVSGPGG-------NLGYGGFGGAGGGLGGGLGGGAGSGLGGGLGGGSGI 100

[Close]

BLAST of CSPI07G13930 vs. NCBI nr
Match: gi|778726832|ref|XP_011659167.1| (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 5.9e-57
Identity = 134/138 (97.10%), Postives = 135/138 (97.83%), Query Frame = 1


Query: 1   MLTPPLVNNTYKTHNCKSPRRRIKKKKMAKLFIALLLALVATHALARPITPGTTFDDQKN 60
           MLT PLVNNT+KTHNC SPRRRIKKKKMAKLFIALLLALVATHALARPITPGTTFDDQKN
Sbjct: 1   MLTRPLVNNTHKTHNCTSPRRRIKKKKMAKLFIALLLALVATHALARPITPGTTFDDQKN 60

Query: 61  FLTYGGLGGYSGIGSNGLPFGGMGGVIGGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLG 120
           FLTYGGLGGYSGIGSNGLPFGGMGGVIGGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLG
Sbjct: 61  FLTYGGLGGYSGIGSNGLPFGGMGGVIGGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLG 120

Query: 121 SGAGGGVGIGGGSGLANP 139
           SGAGGGVGIGGGSGL NP
Sbjct: 121 SGAGGGVGIGGGSGLTNP 138

[Close]

BLAST of CSPI07G13930 vs. NCBI nr
Match: gi|700189336|gb|KGN44569.1| (hypothetical protein Csa_7G336480 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.8e-42
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 1


Query: 28  MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 87
           MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 88  GGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLANP 139
           GGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGL NP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLTNP 111

[Close]

BLAST of CSPI07G13930 vs. NCBI nr
Match: gi|659124133|ref|XP_008462002.1| (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo])

HSP 1 Score: 167.2 bits (422), Expect = 2.1e-38
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 1


Query: 28  MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 87
           MAKLF+ALLLAL+ATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGG+GGV+
Sbjct: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 88  GGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGS----GAGGGVGIGGGSGLANP 139
           GGTGPGGLGGGLGGATGIGGLGG GGGAAGGLGS    GAGGGVG+GGGSGL NP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115

[Close]

BLAST of CSPI07G13930 vs. NCBI nr
Match: gi|778730344|ref|XP_011659762.1| (PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 6.1e-22
Identity = 87/132 (65.91%), Postives = 94/132 (71.21%), Query Frame = 1


Query: 28  MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 87
           MAKLF+ALLLALVATHALARP     TF DQKNFLTYGG+GGYSGIG+NGLPFGG+GG I
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 88  GGTG-----PGGLGGGLGGATGI----GGLGGPG------GGAAGGLGSGAGGGV----- 139
           GG G      GGLGGGLGG TGI    GGLGGPG      GG  GGLG G GGG+     
Sbjct: 61  GGGGLGGGLGGGLGGGLGGGTGIGGGLGGLGGPGGGFGGIGGTTGGLGGGLGGGLGGGLG 120

[Close]

BLAST of CSPI07G13930 vs. NCBI nr
Match: gi|659124371|ref|XP_008462124.1| (PREDICTED: acanthoscurrin-1-like [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-19
Identity = 82/114 (71.93%), Postives = 86/114 (75.44%), Query Frame = 1


Query: 33  IALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVIGGTG- 92
           +ALLLALVATHALARP     TF DQKNFLTYGG+GGYSGIGSNGLPFGG+GG IGG G 
Sbjct: 1   MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAIGGGGL 60

Query: 93  PGGLGGGLGGATGI----GGLGGPG------GGAAGGLGSGAGGGVGIGGGSGL 136
            GGLGGGLGGATGI    GGLGG G      GG  GGLG G GGG+G G G GL
Sbjct: 61  GGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLGGGLGGGLGGGL 114

The following BLAST results are available for this feature:

BLAST of CSPI07G13930 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G13930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6P3_CUCSA	1.3e-42	99.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336480 PE=4 SV=1	[more]
A0A0A0K9U1_CUCSA	4.3e-22	65.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336450 PE=4 SV=1	[more]
V7CWV7_PHAVU	9.5e-14	63.39	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G168900g PE=4 SV=1	[more]
W9SB28_9ROSA	8.0e-13	61.06	Uncharacterized protein OS=Morus notabilis GN=L484_015162 PE=4 SV=1	[more]
A0A061DNL5_THECC	6.8e-12	60.19	Uncharacterized protein OS=Theobroma cacao GN=TCM_003087 PE=4 SV=1	[more]

BLAST of CSPI07G13930 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G29030.1	2.0e-07	51.33	Putative membrane lipoprotein	[more]

BLAST of CSPI07G13930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778726832\|ref\|XP_011659167.1\|	5.9e-57	97.10	PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus]	[more]
gi\|700189336\|gb\|KGN44569.1\|	1.8e-42	99.10	hypothetical protein Csa_7G336480 [Cucumis sativus]	[more]
gi\|659124133\|ref\|XP_008462002.1\|	2.1e-38	90.43	PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo]	[more]
gi\|778730344\|ref\|XP_011659762.1\|	6.1e-22	65.91	PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis sativus]	[more]
gi\|659124371\|ref\|XP_008462124.1\|	1.7e-19	71.93	PREDICTED: acanthoscurrin-1-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G13930.1	CSPI07G13930.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G13930	Carg25548	Silver-seed gourd	carcpiB0463

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G13930	Wax gourd	cpiwgoB706
CSPI07G13930	Cucumber (Gy14) v1	cgycpiB079
CSPI07G13930	Cucurbita maxima (Rimu)	cmacpiB388
CSPI07G13930	Cucurbita maxima (Rimu)	cmacpiB936
CSPI07G13930	Cucurbita moschata (Rifu)	cmocpiB377
CSPI07G13930	Cucurbita moschata (Rifu)	cmocpiB915
CSPI07G13930	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G13930	Watermelon (Charleston Gray)	cpiwcgB554
CSPI07G13930	Watermelon (97103) v1	cpiwmB586
CSPI07G13930	Cucurbita pepo (Zucchini)	cpecpiB159
CSPI07G13930	Cucurbita pepo (Zucchini)	cpecpiB341
CSPI07G13930	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G13930	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G13930	Silver-seed gourd	carcpiB0100
CSPI07G13930	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G13930	Watermelon (97103) v2	cpiwmbB597