CSPI07G13890 (gene) Wild cucumber (PI 183967)

NameCSPI07G13890
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPlant self-incompatibility protein S1 family
LocationChr7 : 12399409 .. 12399852 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGAATTTTGAGTTATTTGGTTGTATTATTTGTTGTTCTTCATCAGCAACATTTCTTTGTGGGAGCTGTTCTTCCACCAGCAATTGTTAATAAATGGCATATCCATGTGATTAATGGACTAAGCAATGGAAAATTAATGGCTCATTGTAAATCAAGAGATACTGATATTGGAGAACAATATATTGATCATGGATCTGAAATTCAATGGAGTTTCAAGGAAAATGTTTTTGGTTCAACTTTGTTTTGGTGTTTTATGAGGACACCAAATGGTAGTTTTTCCTCTTTTGAGGTGTTTTGGCATGAAACTCAACATTATTGGCTTCATTACAGGTGCACTTTAGATCAAGGAACTTGTTACTGGATAGCTAAAGATGATGGAATTTACTTGAGAAATATTCCAGATAGTATCGATGAAAAGATTCATGAATGGAAAAAAGCA

mRNA sequence

ATGGGTAGAATTTTGAGTTATTTGGTTGTATTATTTGTTGTTCTTCATCAGCAACATTTCTTTGTGGGAGCTGTTCTTCCACCAGCAATTGTTAATAAATGGCATATCCATGTGATTAATGGACTAAGCAATGGAAAATTAATGGCTCATTGTAAATCAAGAGATACTGATATTGGAGAACAATATATTGATCATGGATCTGAAATTCAATGGAGTTTCAAGGAAAATGTTTTTGGTTCAACTTTGTTTTGGTGTTTTATGAGGACACCAAATGGTAGTTTTTCCTCTTTTGAGGTGTTTTGGCATGAAACTCAACATTATTGGCTTCATTACAGGTGCACTTTAGATCAAGGAACTTGTTACTGGATAGCTAAAGATGATGGAATTTACTTGAGAAATATTCCAGATAGTATCGATGAAAAGATTCATGAATGGAAAAAAGCA

Coding sequence (CDS)

ATGGGTAGAATTTTGAGTTATTTGGTTGTATTATTTGTTGTTCTTCATCAGCAACATTTCTTTGTGGGAGCTGTTCTTCCACCAGCAATTGTTAATAAATGGCATATCCATGTGATTAATGGACTAAGCAATGGAAAATTAATGGCTCATTGTAAATCAAGAGATACTGATATTGGAGAACAATATATTGATCATGGATCTGAAATTCAATGGAGTTTCAAGGAAAATGTTTTTGGTTCAACTTTGTTTTGGTGTTTTATGAGGACACCAAATGGTAGTTTTTCCTCTTTTGAGGTGTTTTGGCATGAAACTCAACATTATTGGCTTCATTACAGGTGCACTTTAGATCAAGGAACTTGTTACTGGATAGCTAAAGATGATGGAATTTACTTGAGAAATATTCCAGATAGTATCGATGAAAAGATTCATGAATGGAAAAAAGCA
BLAST of CSPI07G13890 vs. TrEMBL
Match: M5VWE5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-31
Identity = 62/116 (53.45%), Postives = 82/116 (70.69%), Query Frame = 1

Query: 32  NKWHIHVINGLSNGK-LMAHCKSRDTDIGEQYIDHGSEIQWSFKENVFGSTLFWCFMRTP 91
           NKWH+HV+N L  GK L AHCKS+D D+GE+ +  G+E  WSFKEN FG+TL+WC+M T 
Sbjct: 17  NKWHVHVVNNLGAGKTLFAHCKSKDDDLGERNLAPGTEFNWSFKENFFGTTLYWCYMST- 76

Query: 92  NGSFSSFEVFWHETQHYWLHYRCTLDQGTCYWIAKDDGIYLRNIPDSIDEKIHEWK 147
           +   ++ +VFW E  H WL YRC      C WIAKDDGIY++ IP++ DE  H+W+
Sbjct: 77  DQKHAALDVFWVEGDHSWLQYRCNWKD--CIWIAKDDGIYIKIIPENRDEFSHKWE 129

BLAST of CSPI07G13890 vs. TrEMBL
Match: A0A0A0K6N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-27
Identity = 55/117 (47.01%), Postives = 80/117 (68.38%), Query Frame = 1

Query: 31  VNKWHIHVINGLSNGK-LMAHCKSRDTDIGEQYIDHGSEIQWSFKENVFGSTLFWCFMRT 90
           ++ W IH+ NGLS+G+ L  HCKS+D+D+GE+ +  G+E +W+FK N++ +TLFWC++R 
Sbjct: 27  LSPWEIHIKNGLSDGQALFVHCKSKDSDLGERTLSTGAEFKWNFKVNIWDTTLFWCYLRK 86

Query: 91  PNGSFSSFEVFWHETQHYWLHYRCTLDQGTCYWIAKDDGIYLRNIPDSIDEKIHEWK 147
           P G    FE FW E +  WL  +C  D   C WIA+D GIYL++   + DE+IH WK
Sbjct: 87  PKGDQVRFEAFWVEKKTRWLRVKC--DGNICNWIAEDTGIYLKDNSTNEDERIHYWK 141

BLAST of CSPI07G13890 vs. TrEMBL
Match: V4VUI1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.8e-26
Identity = 61/141 (43.26%), Postives = 85/141 (60.28%), Query Frame = 1

Query: 8   LVVLFVVLHQQHFFVGAVLPPAIVNKWHIHVINGLSNGK-LMAHCKSRDTDIGEQYIDHG 67
           LV + VVL      +   + P     WH+HV+N LSN + L  HCKS+D D+GE  +  G
Sbjct: 8   LVAVIVVLA---LAIRPSVSPIPTKTWHVHVVNNLSNNQTLFLHCKSKDDDLGEHKLTTG 67

Query: 68  SEIQWSFKENVFGSTLFWCFMRTPNGSFSSFEVFWHETQHYWLHYRCTLDQGTCYWIAKD 127
           +E  W FKEN F +TLFWC +R P+   ++F+VFW+E    +  +RC      C W AKD
Sbjct: 68  TESNWKFKENFFQTTLFWCHLRKPDNFCNNFKVFWNED---FFQFRCRYKD--CIWTAKD 127

Query: 128 DGIYLRNIPDSIDEKIHEWKK 148
           +GIYL+NIP+  DE   +WK+
Sbjct: 128 EGIYLKNIPEGRDELWQKWKQ 140

BLAST of CSPI07G13890 vs. TrEMBL
Match: V4TTV3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-25
Identity = 62/141 (43.97%), Postives = 85/141 (60.28%), Query Frame = 1

Query: 8   LVVLFVVLHQQHFFVGAVLPPAIVNKWHIHVINGLSNGK-LMAHCKSRDTDIGEQYIDHG 67
           LVV+ VVL      +   + P     WH+HV+N LSN + L+ HCKS+D D+GE  +  G
Sbjct: 12  LVVVTVVLA---LAIRPSVSPIPTKTWHVHVVNNLSNNQTLLVHCKSKDDDLGEHNLAAG 71

Query: 68  SEIQWSFKENVFGSTLFWCFMRTPNGSFSSFEVFWHETQHYWLHYRCTLDQGTCYWIAKD 127
           +E  W FKEN F +TLFWC+++  +   + F VFW E    +  +RC      C WIAK 
Sbjct: 72  TEFAWKFKENFFQTTLFWCYLKKQDKFCNIFNVFWKED---FFQFRCRYK--NCIWIAKV 131

Query: 128 DGIYLRNIPDSIDEKIHEWKK 148
           +GIYL+NIP+  DE  HEWK+
Sbjct: 132 EGIYLKNIPEGHDELWHEWKQ 144

BLAST of CSPI07G13890 vs. TrEMBL
Match: A0A0D2R2C1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G224300 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.5e-25
Identity = 53/114 (46.49%), Postives = 75/114 (65.79%), Query Frame = 1

Query: 34  WHIHVINGLSNGK-LMAHCKSRDTDIGEQYIDHGSEIQWSFKENVFGSTLFWCFMRTPNG 93
           WH+H +N LSN K L+ HCKSRD D+G   +  G+E  W F+  +FG TLFWC+M   N 
Sbjct: 48  WHVHTVNDLSNNKTLLVHCKSRDDDLGIHNLTVGTEFYWKFRPRIFGGTLFWCYMAYDN- 107

Query: 94  SFSSFEVFWHETQHYWLHYRCTLDQGTCYWIAKDDGIYLRNIPDSIDEKIHEWK 147
             ++F+VFW +     L+ +C  + G CYWIA+DDGIYL++IP   DE  ++W+
Sbjct: 108 LHAAFKVFWEDPS---LYAKC--NYGDCYWIARDDGIYLKDIPGERDEYYYDWE 155

BLAST of CSPI07G13890 vs. TAIR10
Match: AT5G04350.1 (AT5G04350.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-08
Identity = 30/97 (30.93%), Postives = 52/97 (53.61%), Query Frame = 1

Query: 40  NGLSNGKLM-AHCKSRDTDIGEQYIDHGSEIQWSFKENVFGSTLFWCFM-RTPNG----S 99
           N L + KL+  HC+S+D D+GE  +  G + +++F +N++ +T F C M + PN      
Sbjct: 33  NQLEHSKLLKVHCRSKDDDLGEHILKIGQDYEFTFGDNIWQTTSFSCQMDQGPNFKHHLD 92

Query: 100 FSSFEVFWHETQHYWLHYRCTLDQGTCYWIAKDDGIY 131
           F ++E  W +             + +C WI ++DGIY
Sbjct: 93  FVAYETSWSKAL-----------EASCKWIGREDGIY 118

BLAST of CSPI07G13890 vs. TAIR10
Match: AT3G26880.1 (AT3G26880.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 54.3 bits (129), Expect = 7.4e-08
Identity = 30/93 (32.26%), Postives = 46/93 (49.46%), Query Frame = 1

Query: 39  INGLSNGKLMAHCKSRDTDIGEQYIDHGSEIQWSFKENVFGSTLFWC-FMRTPNGSFSSF 98
           +N  +   L  HCKS++ DIG +Y+  G  + +SFK N +G+T FWC   + P+      
Sbjct: 32  LNPKNKNILKVHCKSKNNDIGVKYLKIGEVMSFSFKTNFWGTTEFWCNLYKGPDYK---- 91

Query: 99  EVFWHETQHYWLHYRCTLDQGTCYWIAKDDGIY 131
              +     Y        D  +  W+A+DDGIY
Sbjct: 92  --RYRGITAYQAIGLFAKDGSSYNWLARDDGIY 118

BLAST of CSPI07G13890 vs. TAIR10
Match: AT1G11765.1 (AT1G11765.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-07
Identity = 31/107 (28.97%), Postives = 55/107 (51.40%), Query Frame = 1

Query: 40  NGLSNGK-LMAHCKSRDTDIGEQYIDHGSEIQWSFKENVFGSTLFWCFMRTPNGSFSSFE 99
           N LS+ K L   CKS D D+ E+Y+  G +  +SF ++V G TLFWC M      +   +
Sbjct: 37  NSLSHNKWLKVRCKSGDNDVRERYMKPGEDWGFSFHDDVMGETLFWCTM------YKGAD 96

Query: 100 VFWHETQHYWLHYRCTLDQGTCYWIAKDDGIYLRNIPDSIDEKIHEW 146
               +    ++  +     G+  ++A++DGIY   +   +  K+++W
Sbjct: 97  YKVQKKFDAYVQDKRMPHGGSYNYVAQEDGIYHSTLIHRM-RKMYDW 136

BLAST of CSPI07G13890 vs. TAIR10
Match: AT4G16195.1 (AT4G16195.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 52.8 bits (125), Expect = 2.2e-07
Identity = 33/118 (27.97%), Postives = 56/118 (47.46%), Query Frame = 1

Query: 32  NKWHIHVINGLSNG-KLMAHCKSRDTDIGEQYIDHGSEIQWSFKENVFGSTLFWCFMRTP 91
           +K  + + N L N   L+ HCKS+D D+G + +  G    +SF    FG TL++C    P
Sbjct: 46  SKRTVEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWP 105

Query: 92  NGSFSSFEVFWHETQHYWLHYRCTLDQGTCYWIAKDDGIYLRNIPDSIDEKIHEWKKA 149
           N S  SF+++  + +      +C  D+  C W  + +G    N      +  + W K+
Sbjct: 106 NES-HSFDIY-KDHRDSGGDNKCESDR--CVWKIRRNGPCRFNDETKQFDLCYPWNKS 159

BLAST of CSPI07G13890 vs. NCBI nr
Match: gi|449443935|ref|XP_004139731.1| (PREDICTED: uncharacterized protein LOC101207655 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 4.8e-33
Identity = 59/120 (49.17%), Postives = 87/120 (72.50%), Query Frame = 1

Query: 27  PPAIVNKWHIHVINGLSNGKLMAHCKSRDTDIGEQY-IDHGSEIQWSFKENVFGSTLFWC 86
           PP   +++ +HV+NGLS+  L  HCKS+D D+G  + ++HG + QW+F+EN +G+TLFWC
Sbjct: 14  PPPTASRYFVHVVNGLSSHSLDVHCKSKDDDLGYHHMVNHGDDFQWNFEENFWGTTLFWC 73

Query: 87  FMRTPNGSFSSFEVFWHETQHYWLHYRCTLDQGTCYWIAKDDGIYLRNIPDSIDEKIHEW 146
            +  P  +++ FE FW E+++ WL YRC    GTC W AKDDGIYLRN+P ++DE +H+W
Sbjct: 74  RLENPE-AYADFESFWPESRNLWLRYRCGNQLGTCIWTAKDDGIYLRNMPANVDEFVHKW 132

BLAST of CSPI07G13890 vs. NCBI nr
Match: gi|659124353|ref|XP_008462114.1| (PREDICTED: uncharacterized protein LOC103500542 [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 3.1e-32
Identity = 72/147 (48.98%), Postives = 93/147 (63.27%), Query Frame = 1

Query: 1   MGRILSYLVVLFVVLHQQHFFVGAVLPPAIVNKWHIHVINGLSNGKLMAHCKSRDTDIGE 60
           MG I+   VV  +VL            P    +WHIHV+NGLSN  L+ HCKSRD D+G 
Sbjct: 1   MGTIMHLAVVPLLVLVAMVVVQPCTAVPIPHPRWHIHVVNGLSNETLLVHCKSRDDDLGI 60

Query: 61  QYIDHGSEIQWSFKENVFGSTLFWCFMRTPNGSFSSFEVFWHETQHYWLHYRCTLDQGTC 120
           Q++  G+E  W+F+ ++FG TLFWC++  PN S  SFE FW E +H WL+ RC      C
Sbjct: 61  QHLVKGAEFHWTFRVSLFGRTLFWCYLEKPNFSV-SFESFWVE-KHVWLNSRCY--DKNC 120

Query: 121 YWIAKDDGIYLRNIPDSIDEKIHEWKK 148
            WIAKDDGIYLRN P +I+E++H W K
Sbjct: 121 IWIAKDDGIYLRNNPVNINERVHNWNK 143

BLAST of CSPI07G13890 vs. NCBI nr
Match: gi|470112332|ref|XP_004292390.1| (PREDICTED: uncharacterized protein LOC101314627 [Fragaria vesca subsp. vesca])

HSP 1 Score: 145.2 bits (365), Expect = 9.1e-32
Identity = 60/114 (52.63%), Postives = 80/114 (70.18%), Query Frame = 1

Query: 33  KWHIHVINGLSNGK-LMAHCKSRDTDIGEQYIDHGSEIQWSFKENVFGSTLFWCFMRTPN 92
           KWH+HV+NGLS+ + L  HCKS+D D+G   +  G+E  WSF+EN  G+TLFWC+MRT  
Sbjct: 30  KWHVHVVNGLSSRRTLFVHCKSKDDDLGIHNLAVGTETNWSFRENFIGTTLFWCYMRTDR 89

Query: 93  GSFSSFEVFWHETQHYWLHYRCTLDQGTCYWIAKDDGIYLRNIPDSIDEKIHEW 146
             ++SF+VFW E  H WL  RC      C W A+DDGIY++NIP++ DE IH+W
Sbjct: 90  EEYASFDVFWEEHDHKWLQTRCNWKD--CIWTARDDGIYIKNIPNNSDELIHKW 141

BLAST of CSPI07G13890 vs. NCBI nr
Match: gi|659124369|ref|XP_008462123.1| (PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-31
Identity = 70/142 (49.30%), Postives = 92/142 (64.79%), Query Frame = 1

Query: 8   LVVLFVVLHQQHFFVGAV--LPPAIVNKWHIHVINGLSNG-KLMAHCKSRDTDIGEQYID 67
           +V+L VVL     FVG +  +  A + KW +HV+N L+   KL+ HCKS+D D+GE  ++
Sbjct: 13  VVLLMVVL----MFVGRIEQMEGAPLEKWTVHVMNDLTKAQKLLVHCKSKDNDLGEHSVN 72

Query: 68  HGSEIQWSFKENVFGSTLFWCFMRTPNGSFSSFEVFWHETQHYWLHYRCTLDQGTCYWIA 127
            GSE  WSF+ N+F +TLFWC +R PNG  +SFE FW E    WL+YRC   +  CYW A
Sbjct: 73  VGSEYNWSFRINIFETTLFWCELRKPNGQHASFEAFWVEKTSIWLYYRCL--ESKCYWHA 132

Query: 128 KDDGIYLRNIPDSIDEKIHEWK 147
           KDDGIYL N PD     IH+W+
Sbjct: 133 KDDGIYLANNPDKTQLLIHKWE 148

BLAST of CSPI07G13890 vs. NCBI nr
Match: gi|449443917|ref|XP_004139722.1| (PREDICTED: uncharacterized protein LOC101205020 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 2.0e-31
Identity = 71/144 (49.31%), Postives = 93/144 (64.58%), Query Frame = 1

Query: 4   ILSYLVVLFVVLHQQHFFVGAVLPPAIVNKWHIHVINGLSNGKLMAHCKSRDTDIGEQYI 63
           ++  LVVL  +L  Q      +  P    +WHIHV+NGLSN  L+ HCKS D D+G Q++
Sbjct: 5   VVPLLVVLVAMLVVQPCMAVPIPHP----RWHIHVVNGLSNETLLVHCKSGDDDLGIQHL 64

Query: 64  DHGSEIQWSFKENVFGSTLFWCFMRTPNGSFSSFEVFWHETQHYWLHYRCTLDQGTCYWI 123
             G+E  W+F+ ++FG TLFWC++  PN S  SFE FW E +H WL+ RC      C WI
Sbjct: 65  VRGAEFHWTFRVSLFGRTLFWCYLEKPNFSV-SFESFWVE-KHVWLNSRCY--DKNCIWI 124

Query: 124 AKDDGIYLRNIPDSIDEKIHEWKK 148
           AKDDGIYLRN P +IDE++H W K
Sbjct: 125 AKDDGIYLRNNPVNIDERVHNWNK 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
M5VWE5_PRUPE2.4e-3153.45Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 S... [more]
A0A0A0K6N8_CUCSA1.2e-2747.01Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336430 PE=4 SV=1[more]
V4VUI1_9ROSI6.8e-2643.26Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1[more]
V4TTV3_9ROSI1.2e-2543.97Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1[more]
A0A0D2R2C1_GOSRA7.5e-2546.49Uncharacterized protein OS=Gossypium raimondii GN=B456_004G224300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G04350.11.1e-0830.93 Plant self-incompatibility protein S1 family[more]
AT3G26880.17.4e-0832.26 Plant self-incompatibility protein S1 family[more]
AT1G11765.11.7e-0728.97 Plant self-incompatibility protein S1 family[more]
AT4G16195.12.2e-0727.97 Plant self-incompatibility protein S1 family[more]
Match NameE-valueIdentityDescription
gi|449443935|ref|XP_004139731.1|4.8e-3349.17PREDICTED: uncharacterized protein LOC101207655 [Cucumis sativus][more]
gi|659124353|ref|XP_008462114.1|3.1e-3248.98PREDICTED: uncharacterized protein LOC103500542 [Cucumis melo][more]
gi|470112332|ref|XP_004292390.1|9.1e-3252.63PREDICTED: uncharacterized protein LOC101314627 [Fragaria vesca subsp. vesca][more]
gi|659124369|ref|XP_008462123.1|1.2e-3149.30PREDICTED: uncharacterized protein LOC103500552 [Cucumis melo][more]
gi|449443917|ref|XP_004139722.1|2.0e-3149.31PREDICTED: uncharacterized protein LOC101205020 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G13890.1CSPI07G13890.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 35..145
score: 1.8
NoneNo IPR availablePANTHERPTHR31232FAMILY NOT NAMEDcoord: 4..148
score: 2.9
NoneNo IPR availablePANTHERPTHR31232:SF7S PROTEIN HOMOLOGUE 74-RELATEDcoord: 4..148
score: 2.9

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G13890Cla014982Watermelon (97103) v1cpiwmB586
CSPI07G13890Bhi09G001127Wax gourdcpiwgoB706
CSPI07G13890Cucsa.078530Cucumber (Gy14) v1cgycpiB079
The following gene(s) are paralogous to this gene:

None