CSPI07G13600 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G13600
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr7 : 12123559 .. 12123972 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCCCCCAAAGGGCAGGTTCTTACACGTTACTCACCCGTCCGCCACTGGAAATACTACTTCCCGTCCGACTTGCATGTGTTAAGCATGCCGTCAGCGTTCATCCTGAGCCAGGATCGAAATCTCCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAAGAGTGTAGCTCGAGCTAAACCTATAGCCCACCAATTGTCTAAATAA

mRNA sequence

ATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAAGAGTGTAGCTCGAGCTAAACCTATAGCCCACCAATTGTCTAAATAA

Coding sequence (CDS)

ATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAAGAGTGTAGCTCGAGCTAAACCTATAGCCCACCAATTGTCTAAATAA

Homology

[Close]

BLAST of CSPI07G13600 vs. TrEMBL
Match: A0A0A0K6M9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G329345 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.6e-42
Identity = 88/95 (92.63%), Postives = 90/95 (94.74%), Query Frame = 1


Query: 1  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPF 60
          MRFIVALLIA LFVDKAN +LSFIPRHNLYPCASYSPGVRSQKY+HPHPL SIPRASYPF
Sbjct: 1  MRFIVALLIAFLFVDKANLKLSFIPRHNLYPCASYSPGVRSQKYNHPHPLKSIPRASYPF 60

Query: 61 SFDHGGGASQNRKTHIGFRDKSVARAKPIAHQLSK 96
          SFDH  GASQNRKTHIGFRDKSVARAKPIAHQLSK
Sbjct: 61 SFDHCEGASQNRKTHIGFRDKSVARAKPIAHQLSK 95

[Close]

BLAST of CSPI07G13600 vs. TrEMBL
Match: U5D449_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00030p00239160 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-21
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 1


Query: 1  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPF 60
          MRFIVALLIAS FVDKA+SELSFIPRHNL  C        +Q+YSH +PL S+P+ASY F
Sbjct: 1  MRFIVALLIASFFVDKADSELSFIPRHNLCSC--------TQQYSHSYPLKSLPQASYAF 60

Query: 61 SFDHGGGASQNRKTHIGFRD 81
          SFDHGGGASQN+K  IGFRD
Sbjct: 61 SFDHGGGASQNKKACIGFRD 72

[Close]

BLAST of CSPI07G13600 vs. TrEMBL
Match: D7TNY0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0101g00230 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-21
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPR 56
          MRFIVALLIASLFVDKA+SELSFIPRHNLYPCASYSPGVRSQKYSHP+PLTSIPR
Sbjct: 1  MRFIVALLIASLFVDKADSELSFIPRHNLYPCASYSPGVRSQKYSHPYPLTSIPR 55

[Close]

BLAST of CSPI07G13600 vs. TrEMBL
Match: L7NNH5_CYCRE (Hypothetical_protein OS=Cycas revoluta GN=orf67 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPF 60
          MRFIVALLIA  FVDKA+SEL FIPRHNLYP ASY PGV SQ YSHP+PL SIPRASY +
Sbjct: 1  MRFIVALLIAPFFVDKADSELFFIPRHNLYPFASYQPGVHSQ-YSHPYPLMSIPRASYDY 59

[Close]

BLAST of CSPI07G13600 vs. TrEMBL
Match: A6H5N3_CYCTA (Uncharacterized protein OS=Cycas taitungensis PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPF 60
          MRFIVALLIA  FVDKA+SEL FIPRHNLYP ASY PGV SQ YSHP+PL SIPRASY +
Sbjct: 1  MRFIVALLIAPFFVDKADSELFFIPRHNLYPFASYQPGVHSQ-YSHPYPLMSIPRASYDY 59

[Close]

BLAST of CSPI07G13600 vs. NCBI nr
Match: gi|700189316|gb|KGN44549.1| (hypothetical protein Csa_7G329345 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 3.7e-42
Identity = 88/95 (92.63%), Postives = 90/95 (94.74%), Query Frame = 1


Query: 1  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPF 60
          MRFIVALLIA LFVDKAN +LSFIPRHNLYPCASYSPGVRSQKY+HPHPL SIPRASYPF
Sbjct: 1  MRFIVALLIAFLFVDKANLKLSFIPRHNLYPCASYSPGVRSQKYNHPHPLKSIPRASYPF 60

Query: 61 SFDHGGGASQNRKTHIGFRDKSVARAKPIAHQLSK 96
          SFDH  GASQNRKTHIGFRDKSVARAKPIAHQLSK
Sbjct: 61 SFDHCEGASQNRKTHIGFRDKSVARAKPIAHQLSK 95

[Close]

BLAST of CSPI07G13600 vs. NCBI nr
Match: gi|548858411|gb|ERN16192.1| (hypothetical protein AMTR_s00030p00239160 [Amborella trichopoda])

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-21
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 1


Query: 1  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPF 60
          MRFIVALLIAS FVDKA+SELSFIPRHNL  C        +Q+YSH +PL S+P+ASY F
Sbjct: 1  MRFIVALLIASFFVDKADSELSFIPRHNLCSC--------TQQYSHSYPLKSLPQASYAF 60

Query: 61 SFDHGGGASQNRKTHIGFRD 81
          SFDHGGGASQN+K  IGFRD
Sbjct: 61 SFDHGGGASQNKKACIGFRD 72

[Close]

BLAST of CSPI07G13600 vs. NCBI nr
Match: gi|296086568|emb|CBI32203.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-21
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPR 56
          MRFIVALLIASLFVDKA+SELSFIPRHNLYPCASYSPGVRSQKYSHP+PLTSIPR
Sbjct: 1  MRFIVALLIASLFVDKADSELSFIPRHNLYPCASYSPGVRSQKYSHPYPLTSIPR 55

[Close]

BLAST of CSPI07G13600 vs. NCBI nr
Match: gi|150251525|ref|YP_001312257.1| (hypothetical protein CYtaCp092 [Cycas taitungensis])

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-16
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPF 60
          MRFIVALLIA  FVDKA+SEL FIPRHNLYP ASY PGV SQ YSHP+PL SIPRASY +
Sbjct: 1  MRFIVALLIAPFFVDKADSELFFIPRHNLYPFASYQPGVHSQ-YSHPYPLMSIPRASYDY 59

[Close]

BLAST of CSPI07G13600 vs. NCBI nr
Match: gi|828335898|ref|XP_012575527.1| (PREDICTED: 30S ribosomal protein S12, chloroplastic-like [Cicer arietinum])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-09
Identity = 43/83 (51.81%), Postives = 51/83 (61.45%), Query Frame = 1


Query: 1  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPF 60
          MRF+VALLIASL VDKA+SE  FI RH +  C  ++     +      PL SIP+ASYP 
Sbjct: 1  MRFLVALLIASLLVDKADSEFYFISRHLVSMCFIFARSCLQKYNIVLSPLASIPQASYPL 60

Query: 61 SFDHGGGASQNRKTHIGFRDKSV 84
           +   G   QNRK HIGFRD  V
Sbjct: 61 -WILIGSRHQNRKIHIGFRDNQV 82

The following BLAST results are available for this feature:

BLAST of CSPI07G13600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G13600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6M9_CUCSA	2.6e-42	92.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G329345 PE=4 SV=1	[more]
U5D449_AMBTC	1.1e-21	71.25	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00030p00239160 PE=4 SV=...	[more]
D7TNY0_VITVI	1.9e-21	96.36	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0101g00230 PE=4 SV=...	[more]
L7NNH5_CYCRE	1.4e-16	80.00	Hypothetical_protein OS=Cycas revoluta GN=orf67 PE=4 SV=1	[more]
A6H5N3_CYCTA	1.4e-16	80.00	Uncharacterized protein OS=Cycas taitungensis PE=4 SV=1	[more]

BLAST of CSPI07G13600 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G13600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189316\|gb\|KGN44549.1\|	3.7e-42	92.63	hypothetical protein Csa_7G329345 [Cucumis sativus]	[more]
gi\|548858411\|gb\|ERN16192.1\|	1.6e-21	71.25	hypothetical protein AMTR_s00030p00239160 [Amborella trichopoda]	[more]
gi\|296086568\|emb\|CBI32203.3\|	2.7e-21	96.36	unnamed protein product [Vitis vinifera]	[more]
gi\|150251525\|ref\|YP_001312257.1\|	2.0e-16	80.00	hypothetical protein CYtaCp092 [Cycas taitungensis]	[more]
gi\|828335898\|ref\|XP_012575527.1\|	1.8e-09	51.81	PREDICTED: 30S ribosomal protein S12, chloroplastic-like [Cicer arietinum]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G13600.1	CSPI07G13600.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G13600	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G13600	Watermelon (97103) v2	cpiwmbB597
CSPI07G13600	Wax gourd	cpiwgoB719
CSPI07G13600	Cucumber (Gy14) v1	cgycpiB079
CSPI07G13600	Cucurbita moschata (Rifu)	cmocpiB923
CSPI07G13600	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G13600	Melon (DHL92) v3.5.1	cpimeB544
CSPI07G13600	Watermelon (Charleston Gray)	cpiwcgB554
CSPI07G13600	Watermelon (97103) v1	cpiwmB586
CSPI07G13600	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G13600	Melon (DHL92) v3.6.1	cpimedB529
CSPI07G13600	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G13600	Silver-seed gourd	carcpiB0101