CSPI07G13050 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G13050
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr7 : 11493755 .. 11495774 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGAAAGCCACATCTTGCACACTTGAGAGTCTTTGGTTGTGTGGCATATGTAAAGACCACAACCCCTCACCTCAAGAAACTCGACGATCGAAGCTCACCGGTGGTATATTTTGGTGTCGAAGAAGGATGTAAAGCTCATCGCTTATATGACCCAGGTCGTGAAAAACTACAAATTAGTAGAGATGTTGTTTTTCAAGAGAATCTTGAATGGCCTTGGAACGAAGTCGTTAGTGACGGTAAGGAGATTACAGAGTTTCAGGTGATGGACCAATTTTGTTCTGACGAGTTCGAAAACTTGGAGGATGCAGAAACTAGGGTTGAAAATGTCATACCACATGCAACTGAGATACCTGCGATTGGAGCAACCGGTCCATCTCCTCCATCAACGAACACACCGGTCCGTCTAAGATCTCTCACTCATATCTACATCAACACAGAGGAAGTTGTAGGTGGTGATGAACAAGAGAATGAGGTGATGATGGTAGTGTCTGAAGGATTGATTTGTTACCAAGAAGTTGTTAAAGAGGCCCAACTGGTACAAAGTAATGGAGAACGAATTAAAATCCATTGAGAAAAACAACACATGGAGTCTGACCAAGCTTCCACCAGGACACAAACCCATTGGTCTAAAATGGGTGTTCAAATTGAAGAAAGACCCTAGTGTTGAAGTTGTCAAGCACAATGCAAGATTGGTTGCTAAAGGCATTGACTTTGAAGAAGTTTTAGCACCAGTTGCAAGACTTGACACCGTTCGAGTCATTCTTGTACTAGTTGCAAATCAAAGTTGGGAGGTACACCATCTAGATGTGAAGTCGACATTTCTCAATGGAGAACTGGAAGAGGAAGTATATGTTACTCAATCAGAGGGTTTTGAGGTCCCAAATAAAAAACACAAGGTGCATAGATTGTCGAAGGCTCTCTACGGATTAAGGCAAGCTCCACGAGCTTGGAACATTCAACTTGATAGGAGTCTCAAAGAGCTTGGTTTTGGAAAATGCACTCAAAAGCAAGTAGTCTACACAAGAAGTGAAGGAGAAGAATGTGTTCTTGTTGAAGTGTATGTTGACAATCTCATTGTAGCAGGAAATAGCACTGAAAAGGTCAATAAGTTCAAGCAGCAAATGATGGCAGAATTTGAAATGAGCCACTTAGGTCTTCTCTCTTACTACTTAGGAATTGAAGTTGAACAACAGAAGGGTCGAATCCTGCTCAAACAACCAACTTATGCCAAAAGAATTTTGTCCCAATTTGGAATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACATGGAAGGAGCACCGATTGAAGCTACGGAGTACAGAAACATCGTTGGTTGTCTTAGATACTTACTGAACACAAGGCCAAATCTTTCATATGTTTTTGGGATGGCGAGTAAGTATATGGAAAGGCCTACAACCATACATTACAAGGTTGTCAAGCAAATACTTAGGTATTTGAGAGGGACAATTCACTTTGGGCTCACTTATACGAAAGGTCCTAGACAATTCGATATATTAGGTTACTCTGACAGTGATTTAGTCAGTGATCTCGACGGGAGGAAAAGTACAAGTGGAATGAAATTTTACTTAAACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACAGTGACACTCTCATCTTGCAAAGCCGAGTTCATTGCAGCTACTACCGCAGCTTGCCAAGCGTTGTGGTTAAGATGCATTGTTAGCGAGATAGTCAGAATGGAGCCAAGATCAGTAACATTATTCGTGGACAACAAATCCGCGATAGCTCTCATGAAGAATCCTGTATTTCATGGTTGTGGCAAGCACATAGATACATGTTTTCATTTCATTCAAGAGTGTGTTGAGAATGGACAAATTATCGTTGAATTTGTCAATACTAGAGAACAACGAGCCGATGTTTTGACTAAAGCATTGACAAGAGTAAAGTTAGCTGCTATGTGTCAGCTACTTGGTGTTCGTAATTTAGAATCATGTTAG

mRNA sequence

ATGGGGAGAAAGCCACATCTTGCACACTTGAGAGTCTTTGGTTGTGTGGCATATGTAAAGACCACAACCCCTCACCTCAAGAAACTCGACGATCGAAGCTCACCGGTGGTATATTTTGGTGTCGAAGAAGGATGTAAAGCTCATCGCTTATATGACCCAGGTCGTGAAAAACTACAAATTAGTAGAGATGTTGTTTTTCAAGAGAATCTTGAATGGCCTTGGAACGAAGTCGTTAGTGACGGTAAGGAGATTACAGAGTTTCAGGTGATGGACCAATTTTGTTCTGACGAGTTCGAAAACTTGGAGGATGCAGAAACTAGGGTTGAAAATGTCATACCACATGCAACTGAGATACCTGCGATTGGAGCAACCGGTCCATCTCCTCCATCAACGAACACACCGGTCCGTCTAAGATCTCTCACTCATATCTACATCAACACAGAGGAAGTTGTAGGTGGTGATGAACAAGAGAATGAGAAGTTGTTAAAGAGGCCCAACTGGTACAAAGTAATGGAGAACGAATTAAAATCCATTGAGAAAAACAACACATGGAGTCTGACCAAGCTTCCACCAGGACACAAACCCATTGGTCTAAAATGGGTGTTCAAATTGAAGAAAGACCCTAGTGTTGAAGTTGTCAAGCACAATGCAAGATTGGTTGCTAAAGGCATTGACTTTGAAGAAGTTTTAGCACCAGTTGCAAGACTTGACACCGTTCGAGTCATTCTTGTACTAGTTGCAAATCAAAGTTGGGAGGTACACCATCTAGATGTGAAGTCGACATTTCTCAATGGAGAACTGGAAGAGGAAGTATATGTTACTCAATCAGAGGGTTTTGAGGTCCCAAATAAAAAACACAAGGTGCATAGATTGTCGAAGGCTCTCTACGGATTAAGGCAAGCTCCACGAGCTTGGAACATTCAACTTGATAGGAGTCTCAAAGAGCTTGGTTTTGGAAAATGCACTCAAAAGCAAGTAGTCTACACAAGAAGTGAAGGAGAAGAATGTGTTCTTGTTGAAGTGTATGTTGACAATCTCATTGTAGCAGGAAATAGCACTGAAAAGGTCAATAAGTTCAAGCAGCAAATGATGGCAGAATTTGAAATGAGCCACTTAGGTCTTCTCTCTTACTACTTAGGAATTGAAGTTGAACAACAGAAGGGTCGAATCCTGCTCAAACAACCAACTTATGCCAAAAGAATTTTGTCCCAATTTGGAATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACATGGAAGGAGCACCGATTGAAGCTACGGAGTACAGAAACATCGTTGGTTGTCTTAGATACTTACTGAACACAAGGCCAAATCTTTCATATGTTTTTGGGATGGCGAGTAAGTATATGGAAAGGCCTACAACCATACATTACAAGGTTGTCAAGCAAATACTTAGGTATTTGAGAGGGACAATTCACTTTGGGCTCACTTATACGAAAGGTCCTAGACAATTCGATATATTAGGTTACTCTGACAGTGATTTAGTCAGTGATCTCGACGGGAGGAAAAGTACAAGTGGAATGAAATTTTACTTAAACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACAGTGACACTCTCATCTTGCAAAGCCGAGTTCATTGCAGCTACTACCGCAGCTTGCCAAGCGTTGTGGTTAAGATGCATTGTTAGCGAGATAGTCAGAATGGAGCCAAGATCAGTAACATTATTCGTGGACAACAAATCCGCGATAGCTCTCATGAAGAATCCTGTATTTCATGGTTGTGGCAAGCACATAGATACATGTTTTCATTTCATTCAAGAGTGTGTTGAGAATGGACAAATTATCGTTGAATTTGTCAATACTAGAGAACAACGAGCCGATGTTTTGACTAAAGCATTGACAAGAGTAAAGTTAGCTGCTATGTGTCAGCTACTTGGTGTTCGTAATTTAGAATCATGTTAG

Coding sequence (CDS)

ATGGGGAGAAAGCCACATCTTGCACACTTGAGAGTCTTTGGTTGTGTGGCATATGTAAAGACCACAACCCCTCACCTCAAGAAACTCGACGATCGAAGCTCACCGGTGGTATATTTTGGTGTCGAAGAAGGATGTAAAGCTCATCGCTTATATGACCCAGGTCGTGAAAAACTACAAATTAGTAGAGATGTTGTTTTTCAAGAGAATCTTGAATGGCCTTGGAACGAAGTCGTTAGTGACGGTAAGGAGATTACAGAGTTTCAGGTGATGGACCAATTTTGTTCTGACGAGTTCGAAAACTTGGAGGATGCAGAAACTAGGGTTGAAAATGTCATACCACATGCAACTGAGATACCTGCGATTGGAGCAACCGGTCCATCTCCTCCATCAACGAACACACCGGTCCGTCTAAGATCTCTCACTCATATCTACATCAACACAGAGGAAGTTGTAGGTGGTGATGAACAAGAGAATGAGAAGTTGTTAAAGAGGCCCAACTGGTACAAAGTAATGGAGAACGAATTAAAATCCATTGAGAAAAACAACACATGGAGTCTGACCAAGCTTCCACCAGGACACAAACCCATTGGTCTAAAATGGGTGTTCAAATTGAAGAAAGACCCTAGTGTTGAAGTTGTCAAGCACAATGCAAGATTGGTTGCTAAAGGCATTGACTTTGAAGAAGTTTTAGCACCAGTTGCAAGACTTGACACCGTTCGAGTCATTCTTGTACTAGTTGCAAATCAAAGTTGGGAGGTACACCATCTAGATGTGAAGTCGACATTTCTCAATGGAGAACTGGAAGAGGAAGTATATGTTACTCAATCAGAGGGTTTTGAGGTCCCAAATAAAAAACACAAGGTGCATAGATTGTCGAAGGCTCTCTACGGATTAAGGCAAGCTCCACGAGCTTGGAACATTCAACTTGATAGGAGTCTCAAAGAGCTTGGTTTTGGAAAATGCACTCAAAAGCAAGTAGTCTACACAAGAAGTGAAGGAGAAGAATGTGTTCTTGTTGAAGTGTATGTTGACAATCTCATTGTAGCAGGAAATAGCACTGAAAAGGTCAATAAGTTCAAGCAGCAAATGATGGCAGAATTTGAAATGAGCCACTTAGGTCTTCTCTCTTACTACTTAGGAATTGAAGTTGAACAACAGAAGGGTCGAATCCTGCTCAAACAACCAACTTATGCCAAAAGAATTTTGTCCCAATTTGGAATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACATGGAAGGAGCACCGATTGAAGCTACGGAGTACAGAAACATCGTTGGTTGTCTTAGATACTTACTGAACACAAGGCCAAATCTTTCATATGTTTTTGGGATGGCGAGTAAGTATATGGAAAGGCCTACAACCATACATTACAAGGTTGTCAAGCAAATACTTAGGTATTTGAGAGGGACAATTCACTTTGGGCTCACTTATACGAAAGGTCCTAGACAATTCGATATATTAGGTTACTCTGACAGTGATTTAGTCAGTGATCTCGACGGGAGGAAAAGTACAAGTGGAATGAAATTTTACTTAAACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACAGTGACACTCTCATCTTGCAAAGCCGAGTTCATTGCAGCTACTACCGCAGCTTGCCAAGCGTTGTGGTTAAGATGCATTGTTAGCGAGATAGTCAGAATGGAGCCAAGATCAGTAACATTATTCGTGGACAACAAATCCGCGATAGCTCTCATGAAGAATCCTGTATTTCATGGTTGTGGCAAGCACATAGATACATGTTTTCATTTCATTCAAGAGTGTGTTGAGAATGGACAAATTATCGTTGAATTTGTCAATACTAGAGAACAACGAGCCGATGTTTTGACTAAAGCATTGACAAGAGTAAAGTTAGCTGCTATGTGTCAGCTACTTGGTGTTCGTAATTTAGAATCATGTTAG
Homology
[Close]
BLAST of CSPI07G13050 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 3.6e-104
Identity = 240/690 (34.78%), Postives = 378/690 (54.78%), Query Frame = 1 

Query: 8    AHLRVFGCVAYVKTTTPHLKKLDDRSSPVVYFGVEEGCKAHRLYDPGREKLQISRDVVFQ 67
            +HL+VFGC A+         KLDD+S P ++ G  +    +RL+DP ++K+  SRDVVF+
Sbjct: 646  SHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFR 705

Query: 68   EN---LEWPWNEVVSDG-----------------KEITEFQVMDQFCSDEFENLEDAETR 127
            E+        +E V +G                  E T  +V +Q      E +E  E  
Sbjct: 706  ESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQG-EQPGEVIEQGEQL 765

Query: 128  VENVIPHATEIPAIGATGPSPPSTNTPVRLRSLTHIYINTEEVVGGDEQENEKL---LKR 187
             E V     E P  G     P   +   R+ S    Y +TE V+  D++E E L   L  
Sbjct: 766  DEGV--EEVEHPTQGEEQHQPLRRSERPRVESRR--YPSTEYVLISDDREPESLKEVLSH 825

Query: 188  PN---WYKVMENELKSIEKNNTWSLTKLPPGHKPIGLKWVFKLKKDPSVEVVKHNARLVA 247
            P      K M+ E++S++KN T+ L +LP G +P+  KWVFKLKKD   ++V++ ARLV 
Sbjct: 826  PEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVV 885

Query: 248  KG------IDFEEVLAPVARLDTVRVILVLVANQSWEVHHLDVKSTFLNGELEEEVYVTQ 307
            KG      IDF+E+ +PV ++ ++R IL L A+   EV  LDVK+ FL+G+LEEE+Y+ Q
Sbjct: 886  KGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQ 945

Query: 308  SEGFEVPNKKHKVHRLSKALYGLRQAPRAWNIQLDRSLKELGFGKCTQKQVVYTRSEGE- 367
             EGFEV  KKH V +L+K+LYGL+QAPR W ++ D  +K   + K      VY +   E 
Sbjct: 946  PEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSEN 1005

Query: 368  ECVLVEVYVDNLIVAGNSTEKVNKFKQQMMAEFEMSHLGLLSYYLGIEV--EQQKGRILL 427
              +++ +YVD++++ G     + K K  +   F+M  LG     LG+++  E+   ++ L
Sbjct: 1006 NFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWL 1065

Query: 428  KQPTYAKRILSQFGMADCNATKYPMEPKAQLHKDM------EGAPIEATEYRNIVGCLRY 487
             Q  Y +R+L +F M +      P+    +L K M      E   +    Y + VG L Y
Sbjct: 1066 SQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMY 1125

Query: 488  -LLNTRPNLSYVFGMASKYMERPTTIHYKVVKQILRYLRGTIHFGLTYTKGPRQFDILGY 547
             ++ TRP++++  G+ S+++E P   H++ VK ILRYLRGT    L +  G     + GY
Sbjct: 1126 AMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF--GGSDPILKGY 1185

Query: 548  SDSDLVSDLDGRKSTSGMKFYLNESLVSWNSQKQKTVTLSSCKAEFIAATTAACQALWLR 607
            +D+D+  D+D RKS++G  F  +   +SW S+ QK V LS+ +AE+IAAT    + +WL+
Sbjct: 1186 TDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLK 1245

Query: 608  CIVSEIVRMEPRSVTLFVDNKSAIALMKNPVFHGCGKHIDTCFHFIQECVENGQIIVEFV 656
              + E+  +  +   ++ D++SAI L KN ++H   KHID  +H+I+E V++  + V  +
Sbjct: 1246 RFLQEL-GLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKI 1305

[Close]
BLAST of CSPI07G13050 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 312.0 bits (798), Expect = 1.6e-83
Identity = 176/504 (34.92%), Postives = 291/504 (57.74%), Query Frame = 1 

Query: 164  RPNWYKVMENELKSIEKNNTWSLTKLPPGHKPIGLKWVFKLKKDPSVEVVKHNARLVAKG 223
            + +W + +  EL + + NNTW++TK P     +  +WVF +K +     +++ ARLVA+G
Sbjct: 903  KSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARG 962

Query: 224  ------IDFEEVLAPVARLDTVRVILVLVANQSWEVHHLDVKSTFLNGELEEEVYVTQSE 283
                  ID+EE  APVAR+ + R IL LV   + +VH +DVK+ FLNG L+EE+Y+   +
Sbjct: 963  FTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQ 1022

Query: 284  GFEVPNKKHKVHRLSKALYGLRQAPRAWNIQLDRSLKELGFGKCTQKQVVYTRSEGE--E 343
            G         V +L+KA+YGL+QA R W    +++LKE  F   +  + +Y   +G   E
Sbjct: 1023 GISC--NSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINE 1082

Query: 344  CVLVEVYVDNLIVAGNSTEKVNKFKQQMMAEFEMSHLGLLSYYLGIEVEQQKGRILLKQP 403
             + V +YVD++++A     ++N FK+ +M +F M+ L  + +++GI +E Q+ +I L Q 
Sbjct: 1083 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQS 1142

Query: 404  TYAKRILSQFGMADCNATKYPMEPKAQ---LHKDMEGAPIEATEYRNIVGCLRYL-LNTR 463
             Y K+ILS+F M +CNA   P+  K     L+ D +      T  R+++GCL Y+ L TR
Sbjct: 1143 AYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCN----TPCRSLIGCLMYIMLCTR 1202

Query: 464  PNLSYVFGMASKYMERPTTIHYKVVKQILRYLRGTIHFGLTYTKGPR-QFDILGYSDSDL 523
            P+L+    + S+Y  +  +  ++ +K++LRYL+GTI   L + K    +  I+GY DSD 
Sbjct: 1203 PDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDW 1262

Query: 524  VSDLDGRKSTSGMKFYLNE-SLVSWNSQKQKTVTLSSCKAEFIAATTAACQALWLRCIVS 583
                  RKST+G  F + + +L+ WN+++Q +V  SS +AE++A   A  +ALWL+ +++
Sbjct: 1263 AGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLT 1322

Query: 584  EIVRMEPRSVTLFVDNKSAIALMKNPVFHGCGKHIDTCFHFIQECVENGQIIVEFVNTRE 643
             I       + ++ DN+  I++  NP  H   KHID  +HF +E V+N  I +E++ T  
Sbjct: 1323 SINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTEN 1382

Query: 644  QRADVLTKALTRVKLAAMCQLLGV 654
            Q AD+ TK L   +   +   LG+
Sbjct: 1383 QLADIFTKPLPAARFVELRDKLGL 1400

[Close]
BLAST of CSPI07G13050 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 145.2 bits (365), Expect = 2.5e-33
Identity = 94/303 (31.02%), Postives = 156/303 (51.49%), Query Frame = 1 

Query: 256 LDVKSTFLNGELEEEVYVTQSEGFEVPNKKHKVHRLSKALYGLRQAPRAWNIQLDRSLKE 315
           +DV + FLN  ++E +YV Q  GF        V  L   +YGL+QAP  WN  ++ +LK+
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 316 LGFGKCTQKQVVYTRSEGEECVLVEVYVDNLIVAGNSTEKVNKFKQQMMAEFEMSHLGLL 375
           +GF +   +  +Y RS  +  + + VYVD+L+VA  S +  ++ KQ++   + M  LG +
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 376 SYYLGIEVEQ-QKGRILLKQPTYAKRILSQFGMADCNATKYPMEPKAQLHKDMEGAPIEA 435
             +LG+ + Q   G I L    Y  +  S+  +     T+ P+     L +       + 
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180

Query: 436 TEYRNIVGCLRYLLNT-RPNLSYVFGMASKYMERPTTIHYKVVKQILRYLRGTIHFGLTY 495
           T Y++IVG L +  NT RP++SY   + S+++  P  IH +  +++LRYL  T    L Y
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240

Query: 496 TKGPRQFDILGYSDSDLVSDLDGRKSTSGMKFYLNESLVSWNSQKQK-TVTLSSCKAEFI 555
             G  Q  +  Y D+   +  D   ST G    L  + V+W+S+K K  + + S +AE+I
Sbjct: 241 RSG-SQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYI 300

[Close]
BLAST of CSPI07G13050 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.4e-31
Identity = 72/223 (32.29%), Postives = 126/223 (56.50%), Query Frame = 1 

Query: 341 VYVDNLIVAGNSTEKVNKFKQQMMAEFEMSHLGLLSYYLGIEVEQQKGRILLKQPTYAKR 400
           +YVD++++ G+S   +N    Q+ + F M  LG + Y+LGI+++     + L Q  YA++
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 401 ILSQFGMADCNATKYPMEPKAQLHKDMEGAPIEATEYRNIVGCLRYLLNTRPNLSYVFGM 460
           IL+  GM DC     P+  K          P + +++R+IVG L+YL  TRP++SY   +
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNI 124

Query: 461 ASKYMERPTTIHYKVVKQILRYLRGTIHFGLTYTKGPRQFDILGYSDSDLVSDLDGRKST 520
             + M  PT   + ++K++LRY++GTI  GL Y     + ++  + DSD       R+ST
Sbjct: 125 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGL-YIHKNSKLNVQAFCDSDWAGCTSTRRST 184

Query: 521 SGMKFYLNESLVSWNSQKQKTVTLSSCKAEFIAATTAACQALW 564
           +G   +L  +++SW++++Q TV+ SS + E+ A    A +  W
Sbjct: 185 TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]
BLAST of CSPI07G13050 vs. Swiss-Prot
Match: YH41B_YEAST (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.6e-19
Identity = 111/552 (20.11%), Postives = 249/552 (45.11%), Query Frame = 1 

Query: 129  PSTNTPVRLRSLTHIYINTEEVVGGDEQENEKLLKRPNWYKVMEN--ELKSIEKNNTWSL 188
            P     V  + +  IY N  E +  +    EK   +  ++K ++N  ++K  + +  +S 
Sbjct: 1256 PDNMETVSAQKIRAIYYN--EAISKNPDLKEKHEYKQAYHKELQNLKDMKVFDVDVKYSR 1315

Query: 189  TKLPPGHKPIGLKWVFKLKKDPSVEVVKHNARLVAKGID-----FEEVLAPVARLDTVRV 248
            +++P  +  +    +F  K++       + AR+V +G       +  +       + +++
Sbjct: 1316 SEIPD-NLIVPTNTIFTKKRNGI-----YKARIVCRGDTQSPDTYSVITTESLNHNHIKI 1375

Query: 249  ILVLVANQSWEVHHLDVKSTFLNGELEEEVYVTQSEGFEVPNKKHKVHRLSKALYGLRQA 308
             L++  N++  +  LD+   FL  +LEEE+Y+        P+ +  V +L+KALYGL+Q+
Sbjct: 1376 FLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPH------PHDRRCVVKLNKALYGLKQS 1435

Query: 309  PRAWNIQLDRSLKELGFGKCTQKQVVYTRSEGEECVLVEVYVDNLIVAGNSTEKVNKFKQ 368
            P+ WN  L + L  +G    +    +Y     ++ +++ VYVD+ ++A ++ +++++F  
Sbjct: 1436 PKEWNDHLRQYLNGIGLKDNSYTPGLYQTE--DKNLMIAVYVDDCVIAASNEQRLDEFIN 1495

Query: 369  QMMAEFEMSHLGLL------SYYLGIEVEQQK--GRILLKQPTYAKRILSQFG------- 428
            ++ + FE+   G L      +  LG+++   K  G I L   ++  R+  ++        
Sbjct: 1496 KLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIR 1555

Query: 429  -MADCNATKYPMEPKAQ-LHKDMEGAPIEATEYRNIVGCLRYLLN-TRPNLSYVFGMASK 488
              +  + + Y ++PK   L    E       + + ++G L Y+ +  R ++++     ++
Sbjct: 1556 KSSIPHMSTYKIDPKKDVLQMSEEEFRQGVLKLQQLLGELNYVRHKCRYDINFAVKKVAR 1615

Query: 489  YM----ERPTTIHYKVVKQILRYLRGTIHFGLTYTKGPRQFDILGYSDSDLVSDLDGRKS 548
             +    ER   + YK+++ ++RY    IH+     K  +   ++  +D+ + S+ D  +S
Sbjct: 1616 LVNYPHERVFYMIYKIIQYLVRYKDIGIHYDRDCNKDKK---VIAITDASVGSEYDA-QS 1675

Query: 549  TSGMKFYLNESLVSWNSQKQKTVTLSSCKAEFIAATTAACQALWLRCIVSEIVRMEPRSV 608
              G+  +   ++ +  S K     +SS +AE  A       +  L+  + E+   +   +
Sbjct: 1676 RIGVILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDI 1735

Query: 609  TLFVDNKSAIALMKNPVFHGCGKHIDTCFHFIQECVENGQIIVEFVNTREQRADVLTKAL 652
             +  D+K AI  +         K        I+E ++   I +  +  +   AD+LTK +
Sbjct: 1736 VMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPV 1787

[Close]
BLAST of CSPI07G13050 vs. TrEMBL
Match: B8BDZ6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 763.8 bits (1971), Expect = 1.7e-217
Identity = 402/716 (56.15%), Postives = 494/716 (68.99%), Query Frame = 1 

Query: 2    GRKPHLAHLRVFGCVAYVKTTTPHLKKLDDRSSPVVYFGVEEGCKAHRLYDPGREKLQIS 61
            GRKP L HLRVFGC+A+ K TTP+ KKLDDRS+P VY GVEEG KAHRL+DP   ++ +S
Sbjct: 713  GRKPQLGHLRVFGCIAHAKITTPNQKKLDDRSAPYVYLGVEEGSKAHRLFDPRCGRIHVS 772

Query: 62   RDVVFQENLEWPWNEVVSDGKEITEFQVMDQFCSDEFENLEDAETRVENVIPHATEIPAI 121
            RDV+F+EN+ W W+ VV+  +  TEF V      ++  +   A      V  +    PA+
Sbjct: 773  RDVIFEENVPWQWS-VVAGEQNSTEFTV-----EEDGVDAPPAGAPAYPVPRYRAPSPAV 832

Query: 122  -----------------------GATGPSPPSTNT------------------PVRLRSL 181
                                    +T PS P+T +                  PVR RSL
Sbjct: 833  PQSPLASPVGASPSLPTSPQSSPSSTPPSTPATGSVGPVASPGSSGDLRSDEGPVRFRSL 892

Query: 182  THIYINTEEV-VGGDEQENEKLLK-------------RPNWYKVMENELKSIEKNNTWSL 241
              I      V +  DE + + LL              +P W   M  EL++IEKN+TW+L
Sbjct: 893  EDIMREAPRVDLVEDEHDGDALLAEMEEPSSYREAAGQPAWENAMAQELQAIEKNSTWAL 952

Query: 242  TKLPPGHKPIGLKWVFKLKKDPSVEVVKHNARLVAK------GIDFEEVLAPVARLDTVR 301
            T LP GHKPIGLKWV+KLKK+ + EV+KH ARLVAK      G+DFEEV APVARLDTVR
Sbjct: 953  TALPAGHKPIGLKWVYKLKKNTAGEVIKHKARLVAKGYVQRQGVDFEEVFAPVARLDTVR 1012

Query: 302  VILVLVANQSWEVHHLDVKSTFLNGELEEEVYVTQSEGFEVPNKKHKVHRLSKALYGLRQ 361
            VIL + A++ WEVHHLDVKS FLNG+LEEEVYV Q EGF    ++H V RLSKALYGLRQ
Sbjct: 1013 VILAIAADRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKRGEEHLVLRLSKALYGLRQ 1072

Query: 362  APRAWNIQLDRSLKELGFGKCTQKQVVYTRSEGEECVLVEVYVDNLIVAGNSTEKVNKFK 421
            APRAWN +LD+ LKELGF +CTQ+Q VYTR +G+  V+V VYVD+LIV G + +++  FK
Sbjct: 1073 APRAWNTRLDKCLKELGFARCTQEQAVYTRGKGQAGVIVGVYVDDLIVTGENPQEIAMFK 1132

Query: 422  QQMMAEFEMSHLGLLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMADCNATKYPMEPK 481
            QQMM EFEMS LGLLSYYLGIEV Q +  I +KQ  YAK+ILSQFGM  CN T  PMEP+
Sbjct: 1133 QQMMGEFEMSDLGLLSYYLGIEVIQGENGIAIKQAAYAKKILSQFGMQGCNPTSIPMEPR 1192

Query: 482  AQLHKDMEGAPIEATEYRNIVGCLRYLLNTRPNLSYVFGMASKYMERPTTIHYKVVKQIL 541
            + LHKD +G PI+ATEYR ++GCLRYLL+TRP+LSY  G+AS++MERPTT+H K VK IL
Sbjct: 1193 SLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFMERPTTMHLKAVKMIL 1252

Query: 542  RYLRGTIHFGLTYTKGPRQFDILGYSDSDLVSDLDGRKSTSGMKFYLNESLVSWNSQKQK 601
            RYL+GT+  GL +  G    DI G++DSDL  D+D R+ST GM FY+N SLVSW SQKQK
Sbjct: 1253 RYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFYVNSSLVSWCSQKQK 1312

Query: 602  TVTLSSCKAEFIAATTAACQALWLRCIVSEIVRMEPRSVTLFVDNKSAIALMKNPVFHGC 657
            TV LSSC+AEF+AAT AAC ALWLR ++SE++  E + V LFVDNKSAIALMKNPVFHG 
Sbjct: 1313 TVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKPVKLFVDNKSAIALMKNPVFHGR 1372

[Close]
BLAST of CSPI07G13050 vs. TrEMBL
Match: Q10RM4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g05850 PE=4 SV=1)

HSP 1 Score: 763.1 bits (1969), Expect = 2.9e-217
Identity = 396/722 (54.85%), Postives = 495/722 (68.56%), Query Frame = 1 

Query: 2    GRKPHLAHLRVFGCVAYVKTTTPHLKKLDDRSSPVVYFGVEEGCKAHRLYDPGREKLQIS 61
            GRKP L HL+VFGC A+ K T PHLKKLDDRS+P VY GVEEG KAHRL+DP R ++ +S
Sbjct: 691  GRKPQLGHLKVFGCTAHAKNTQPHLKKLDDRSAPYVYLGVEEGSKAHRLFDPRRGRIHVS 750

Query: 62   RDVVFQENLEWPWNEVVSDGKEITEFQVMDQFCSDEFENLEDAETRVENVIPH------- 121
            RDVVF+EN+ W W      G+E T+F + ++      E L    T    V P+       
Sbjct: 751  RDVVFEENVPWEWTSAA--GQEPTDFAMEEE----PGEQLPSPATAAGVVPPYQAPSPGR 810

Query: 122  ---------ATEIPAI-----------GATGPSPPSTNT------------------PVR 181
                     A E+P+            G   P  PSTN+                  P R
Sbjct: 811  RAGKEAVVAAEEVPSPASPVAASPTLPGTPTPGSPSTNSAGVVPSPGTDDNIDTDDGPRR 870

Query: 182  LRSLTHIYINTEEV-VGGDEQENEKLLK-------------RPNWYKVMENELKSIEKNN 241
             RSL  +      V +  DE + E LL              +P W + M+ E+++IEKN 
Sbjct: 871  YRSLADVLREAPRVDLVEDECDGEALLAESEEPSSYREAAGQPAWEEAMQREMEAIEKNK 930

Query: 242  TWSLTKLPPGHKPIGLKWVFKLKKDPSVEVVKHNARLVAKG------IDFEEVLAPVARL 301
            TW L  LP GH+ IGLKWV+KLKK+ + E++KH ARLVAKG      +DFEEV APVARL
Sbjct: 931  TWELAMLPAGHRAIGLKWVYKLKKNTAGEIIKHKARLVAKGYVQKQGVDFEEVFAPVARL 990

Query: 302  DTVRVILVLVANQSWEVHHLDVKSTFLNGELEEEVYVTQSEGFEVPNKKHKVHRLSKALY 361
            DTVRV+L + A++ W+VHHLDVKS FLNGELEEEVYV Q EGF    K+H V +L KALY
Sbjct: 991  DTVRVVLAVAADRRWQVHHLDVKSAFLNGELEEEVYVAQPEGFARSGKEHLVLKLHKALY 1050

Query: 362  GLRQAPRAWNIQLDRSLKELGFGKCTQKQVVYTRSEGEECVLVEVYVDNLIVAGNSTEKV 421
            GLRQAPRAWNI+LDRSL+ELGF +CTQ+Q VYTR  G + ++V VYVD+LIV G +  ++
Sbjct: 1051 GLRQAPRAWNIRLDRSLRELGFDRCTQEQAVYTRGRGSDGIIVGVYVDDLIVTGENPSEL 1110

Query: 422  NKFKQQMMAEFEMSHLGLLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMADCNATKYP 481
              FK+QMM EFEMS LGLL+YYLGIEV+Q +    LKQ  YAK++LSQFGM +CN+   P
Sbjct: 1111 KVFKEQMMGEFEMSDLGLLTYYLGIEVDQDESATTLKQTAYAKKLLSQFGMMECNSVSIP 1170

Query: 482  MEPKAQLHKDMEGAPIEATEYRNIVGCLRYLLNTRPNLSYVFGMASKYMERPTTIHYKVV 541
            ++P++QL KD EG P++ATEYR I+G LRYLL+TRP+LSY  G+AS++MERPT +H+K V
Sbjct: 1171 IDPRSQLSKDPEGHPVDATEYRRIIGSLRYLLHTRPDLSYAVGVASRFMERPTVMHFKAV 1230

Query: 542  KQILRYLRGTIHFGLTYTKGPRQFDILGYSDSDLVSDLDGRKSTSGMKFYLNESLVSWNS 601
            KQILRY++GT+ +GL Y  G     I GY+DSDL  DLD R+ST GM FY+N+SLV+W+S
Sbjct: 1231 KQILRYIKGTMDYGLVYAAGTGALKITGYTDSDLAGDLDDRRSTGGMAFYINQSLVAWSS 1290

Query: 602  QKQKTVTLSSCKAEFIAATTAACQALWLRCIVSEIVRMEPRSVTLFVDNKSAIALMKNPV 659
            QKQKTV LSSC+AEF+AATTAACQALWLR +++E+  +E ++V LFVDN+SAIALMKNPV
Sbjct: 1291 QKQKTVALSSCEAEFMAATTAACQALWLRLLLAEVAGVEEKAVKLFVDNRSAIALMKNPV 1350

[Close]
BLAST of CSPI07G13050 vs. TrEMBL
Match: Q0J8A6_ORYSJ (Os08g0125300 protein OS=Oryza sativa subsp. japonica GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 762.7 bits (1968), Expect = 3.7e-217
Identity = 402/716 (56.15%), Postives = 492/716 (68.72%), Query Frame = 1 

Query: 2    GRKPHLAHLRVFGCVAYVKTTTPHLKKLDDRSSPVVYFGVEEGCKAHRLYDPGREKLQIS 61
            GRKP L HLRVFGC+A+ K TTP+ KKLDDRS+P VY GVEEG KAHRL+DP   ++ +S
Sbjct: 713  GRKPQLGHLRVFGCIAHAKITTPNQKKLDDRSAPYVYLGVEEGSKAHRLFDPRCGRIHVS 772

Query: 62   RDVVFQENLEWPWNEVVSDGKEITEFQVMDQFCSDEFENLEDAETRVENVIPHATEIPAI 121
            RDV+F+EN+ W W+ VV+  +  TEF V      ++  +   A      V  +    PA+
Sbjct: 773  RDVIFEENVPWQWS-VVAGEQNSTEFTV-----EEDGVDAPPAGAPAYPVPRYRAPSPAV 832

Query: 122  -----------------------GATGPSPPSTNT------------------PVRLRSL 181
                                    +T PS P+T +                  PVR RSL
Sbjct: 833  PQSPPASPVGASSSLPTSPQSSPSSTPPSTPATGSAGPVASPGSGGDLRSDEGPVRFRSL 892

Query: 182  THIYINTEEV-VGGDEQENEKLLK-------------RPNWYKVMENELKSIEKNNTWSL 241
              I      V +  DE + + LL              +P W   M  EL++IEKN+TW+L
Sbjct: 893  EDIMREAPRVDLVEDEHDGDALLAEMEEPSSYREAAGQPAWENAMAQELQAIEKNSTWAL 952

Query: 242  TKLPPGHKPIGLKWVFKLKKDPSVEVVKHNARLVAK------GIDFEEVLAPVARLDTVR 301
            T LP GHKPIGLKWV+KLKK+ + EV+KH ARLVAK      G+DFEEV APVARLDTVR
Sbjct: 953  TALPAGHKPIGLKWVYKLKKNTAGEVIKHKARLVAKGYVQRQGVDFEEVFAPVARLDTVR 1012

Query: 302  VILVLVANQSWEVHHLDVKSTFLNGELEEEVYVTQSEGFEVPNKKHKVHRLSKALYGLRQ 361
            VIL + A++ WEVHHLDVKS FLNG+LEEEVYV Q EGF    ++H V RLSKALYGLRQ
Sbjct: 1013 VILAIAADRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKRGEEHLVLRLSKALYGLRQ 1072

Query: 362  APRAWNIQLDRSLKELGFGKCTQKQVVYTRSEGEECVLVEVYVDNLIVAGNSTEKVNKFK 421
            APRAWN +LD+ LKELGF +CTQ+Q VYTR +G+  V+V VYVD+LIV G +  ++  FK
Sbjct: 1073 APRAWNTRLDKCLKELGFARCTQEQAVYTRGKGQAGVIVGVYVDDLIVTGENPHEIAMFK 1132

Query: 422  QQMMAEFEMSHLGLLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMADCNATKYPMEPK 481
            QQMM EFEMS LGLLSYYLGIEV Q +  I +KQ  YAK+ILSQFGM  CN T  PMEP+
Sbjct: 1133 QQMMGEFEMSDLGLLSYYLGIEVIQGENGIAIKQAAYAKKILSQFGMQGCNPTSIPMEPR 1192

Query: 482  AQLHKDMEGAPIEATEYRNIVGCLRYLLNTRPNLSYVFGMASKYMERPTTIHYKVVKQIL 541
            + LHKD +G PI+ATEYR ++GCLRYLL+TRP+LSY  G+AS++MERPTT+H K VK IL
Sbjct: 1193 SLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFMERPTTMHLKAVKMIL 1252

Query: 542  RYLRGTIHFGLTYTKGPRQFDILGYSDSDLVSDLDGRKSTSGMKFYLNESLVSWNSQKQK 601
            RYL+GT+  GL +  G    DI G++DSDL  D+D R+ST GM FY+N SLVSW SQKQK
Sbjct: 1253 RYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFYVNSSLVSWCSQKQK 1312

Query: 602  TVTLSSCKAEFIAATTAACQALWLRCIVSEIVRMEPRSVTLFVDNKSAIALMKNPVFHGC 657
            TV LSSC+AEF+AAT AAC ALWLR ++SE++  E + V LFVDNKSAIALMKNPVFHG 
Sbjct: 1313 TVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKRVKLFVDNKSAIALMKNPVFHGR 1372

[Close]
BLAST of CSPI07G13050 vs. TrEMBL
Match: Q338J6_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os10g26030 PE=4 SV=2)

HSP 1 Score: 647.5 bits (1669), Expect = 1.7e-182
Identity = 348/662 (52.57%), Postives = 436/662 (65.86%), Query Frame = 1 

Query: 2    GRKPHLAHLRVFGCVAYVKTTTPHLKKLDDRSSPVVYFGVEEGCKAHRLYDPGREKLQIS 61
            G+KPHL HLRVFGC A+ K T PHLKKLDDRS+P VY GVEEG KAHRL+DP R ++ +S
Sbjct: 560  GKKPHLGHLRVFGCTAHAKVTAPHLKKLDDRSNPFVYLGVEEGSKAHRLFDPRRRQIIVS 619

Query: 62   RDVVFQENLEWPWNEVVSDGKEITEFQVMDQFCSDEFENLEDAETRVENVIPHATEIPAI 121
            RDVVF EN  W W+    +    TEF+V +   +++    E A                 
Sbjct: 620  RDVVFDENTPWQWSAAAGEVTS-TEFEVEEPVGAEQPALAEQA----------------- 679

Query: 122  GATGPSPPSTNT-PVRLRSLTHIYINTEEVVGGDEQENEKLLK--------------RPN 181
            G   P    ++  PVR RSL  I +    V   ++ ++ + L                P 
Sbjct: 680  GLASPHTAGSDVGPVRYRSLAEIMLEAPRVDLVEDDDDARALLAEMEEPLSYREATGEPA 739

Query: 182  WYKVMENELKSIEKNNTWSLTKLPPGHKPIGLKWVFKLKKDPSVEVVKHNARLVA----- 241
            W   M  EL++IEKN TWSL  LP GHK IGLKWVFKLKK+ + EV+KH ARLVA     
Sbjct: 740  WVNAMNKELEAIEKNKTWSLCMLPAGHKAIGLKWVFKLKKNTAGEVIKHKARLVANGYVQ 799

Query: 242  -KGIDFEEVLAPVARLDTVRVILVLVANQSWEVHHLDVKSTFLNGELEEEVYVTQSEGFE 301
             +G+DF+EV APVARLDTVR IL + A++ W+VHHLDVKS FLNG+LEEEVYV+Q EGF 
Sbjct: 800  QQGVDFDEVFAPVARLDTVRAILAVAADRRWQVHHLDVKSAFLNGDLEEEVYVSQLEGFV 859

Query: 302  VPNKKHKVHRLSKALYGLRQAPRAWNIQLDR---SLKELGFGKCTQKQVVYTRSEGEECV 361
               K+H V+ LSKALYGLR   +A      R   S+KELGF + ++              
Sbjct: 860  EKGKEHLVYELSKALYGLR---QAPRAWNTRLDRSMKELGFSRPSE-------------- 919

Query: 362  LVEVYVDNLIVAGNSTEKVNKFKQQMMAEFEMSHLGLLSYYLGIEVEQQKGRILLKQPTY 421
                              +  FKQQMM EFE+S LGLL+YYLGIEV Q    I +KQ  Y
Sbjct: 920  ------------------ITAFKQQMMGEFEISDLGLLTYYLGIEVLQGTDGIAIKQAAY 979

Query: 422  AKRILSQFGMADCNATKYPMEPKAQLHKDMEGAPIEATEYRNIVGCLRYLLNTRPNLSYV 481
            A++IL+QFGM DCN+T  P+E ++QLHK  EG+ ++ TEYR ++GCLRYLL+T+P+LSY 
Sbjct: 980  ARKILTQFGMLDCNSTSIPIEHRSQLHKVAEGSTVDPTEYRRVIGCLRYLLHTQPDLSYA 1039

Query: 482  FGMASKYMERPTTIHYKVVKQILRYLRGTIHFGLTYTKGPRQFDILGYSDSDLVSDLDGR 541
             G+ SK+ME+ T +H+K VKQILRYL+GTI+ GL ++ G    +I G++DSDL  D D R
Sbjct: 1040 VGVVSKFMEQLTVMHFKAVKQILRYLKGTINCGLMFSGGNDAVEITGFTDSDLAGDSDDR 1099

Query: 542  KSTSGMKFYLNESLVSWNSQKQKTVTLSSCKAEFIAATTAACQALWLRCIVSEIVRMEPR 601
            +STSGM FY N SLVSW+SQKQKTV LSSC+AEF+AAT AACQALWLR ++ E++  E R
Sbjct: 1100 RSTSGMAFYFNSSLVSWSSQKQKTVALSSCEAEFMAATAAACQALWLRGLLIEMIGAEAR 1159

Query: 602  SVTLFVDNKSAIALMKNPVFHGCGKHIDTCFHFIQECVENGQIIVEFVNTREQRADVLTK 640
             V L+VDNKSAIALMKNPVFHG  KHIDT +HFI+ECVE+G+I +EFV T EQRAD LTK
Sbjct: 1160 PVKLYVDNKSAIALMKNPVFHGRSKHIDTRYHFIRECVESGKIQIEFVRTEEQRADALTK 1168

[Close]
BLAST of CSPI07G13050 vs. TrEMBL
Match: Q84SW8_ORYSJ (Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1)

HSP 1 Score: 643.7 bits (1659), Expect = 2.5e-181
Identity = 359/712 (50.42%), Postives = 442/712 (62.08%), Query Frame = 1 

Query: 2    GRKPHLAHLRVFGCVAYVKTTTPHLKKLDDRSSPVVYFGVEEGCKAHRLYDPGREKLQIS 61
            G+KPHL HLRVFGC A+ K T PHLKKLDDRS+PVVY GVEEG KAHRL+DP R ++ +S
Sbjct: 666  GKKPHLGHLRVFGCTAHAKVTAPHLKKLDDRSNPVVYLGVEEGSKAHRLFDPRRRQIIVS 725

Query: 62   RDVVFQENLEWPWNEVVSDGKEITEFQVMDQFCSDEFENLEDAET----RVENVIPHATE 121
            RDVVF EN  W W+    +    TEF+V +   +++    E A +    R       A +
Sbjct: 726  RDVVFDENTPWQWSAAAGEVTS-TEFEVEEPVGAEQPAPAEQAGSVPWYRAPPAGRRAGK 785

Query: 122  IPAIGATGPSPP----------------------------------STNTPVRLRSLTHI 181
             P +     +PP                                  S + PVR RSL  I
Sbjct: 786  EPEVAEQRGTPPASPARFSPTLPSTPTLGSSSTHSAEVQASPRTAGSDDEPVRYRSLAEI 845

Query: 182  YINTEEV-VGGDEQENEKLL-------------KRPNWYKVMENELKSIEKNNTWSLTKL 241
             I    V +  D+ + E LL               P W   M  EL++IEKN TWSL  L
Sbjct: 846  MIEAPRVDLVEDDDDTEALLVEMEEPTSYREAAGEPAWVNAMNKELEAIEKNKTWSLCML 905

Query: 242  PPGHKPIGLKWVFKLKKDPSVEVVKHNARLVAK------GIDFEEVLAPVARLDTVRVIL 301
            P  HK IGLKWVFKLKK+ + EV+KH ARLVAK      G+DF+EV APVARLDTVR IL
Sbjct: 906  PASHKAIGLKWVFKLKKNTAGEVIKHKARLVAKGYVQRQGVDFDEVFAPVARLDTVRAIL 965

Query: 302  VLVANQSWEVHHLDVKSTFLNGELEEEVYVTQSEGFEVPNKKHKVHRLSKALYGLRQAPR 361
             +  ++ W+VHHLDVKS FLNG+LEEEVYV+Q EGF    K+H V++LSKALYGLRQAPR
Sbjct: 966  PVAVDRRWQVHHLDVKSAFLNGDLEEEVYVSQPEGFVEKGKEHLVYKLSKALYGLRQAPR 1025

Query: 362  AWNIQLDRSLKELGFGKCTQKQVVYTRSEGEECVLVEVYVDNLIVAGNSTEKVNKFKQQM 421
            AWN +LDRS+KELGF +C Q+Q VYTR  G   ++V VYVD+LIV G S   +  FKQQM
Sbjct: 1026 AWNTRLDRSMKELGFSRCAQEQAVYTRGTGSTGIIVGVYVDDLIVTGESPSDITAFKQQM 1085

Query: 422  MAEFEMSHLGLLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMADCNATKYPMEPKAQL 481
            M EFEMS LGLL+YYLGIE+ +      +  PT  +R++                 +  L
Sbjct: 1086 MGEFEMSDLGLLTYYLGIELHKDAQGSTV-DPTEYRRVIGCL--------------RYLL 1145

Query: 482  HKDMEGAPIEATEYRNIVGCLRYLLNTRPNLSYVFGMASKYMERPTTIHYKVVKQILRYL 541
            H                          RP+LSY  G+AS++MERPT +H+K VKQILRYL
Sbjct: 1146 HT-------------------------RPDLSYAVGVASRFMERPTVMHFKAVKQILRYL 1205

Query: 542  RGTIHFGLTYTKGPRQFDILGYSDSDLVSDLDGRKSTSGMKFYLNESLVSWNSQKQKTVT 601
            +GTI+ GL ++ G    +I G++DSDL  D D R+STSGM FY N SLVSW+SQKQKTV 
Sbjct: 1206 KGTINCGLMFSGGNGAVEITGFTDSDLAGDSDDRRSTSGMAFYFNGSLVSWSSQKQKTVA 1265

Query: 602  LSSCKAEFIAATTAACQALWLRCIVSEIVRMEPRSVTLFVDNKSAIALMKNPVFHGCGKH 656
            LSSC+AEF+AAT AAC ALWLR ++ E++  E R V L+VDNKSAIALMKNPVFHG  KH
Sbjct: 1266 LSSCEAEFMAATAAACHALWLRGLLIEMIGAEARPVKLYVDNKSAIALMKNPVFHGRSKH 1325

[Close]
BLAST of CSPI07G13050 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 280.4 bits (716), Expect = 2.8e-75
Identity = 154/457 (33.70%), Postives = 253/457 (55.36%), Query Frame = 1 

Query: 167 WYKVMENELKSIEKNNTWSLTKLPPGHKPIGLKWVFKLKKDPSVEVVKHNARLVAKG--- 226
           W   M++E+ ++E  +TW +  LPP  KPIG KWV+K+K +    + ++ ARLVAKG   
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 227 ---IDFEEVLAPVARLDTVRVILVLVANQSWEVHHLDVKSTFLNGELEEEVYVTQSEGFE 286
              IDF E  +PV +L +V++IL + A  ++ +H LD+ + FLNG+L+EE+Y+    G+ 
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217

Query: 287 VPN----KKHKVHRLSKALYGLRQAPRAWNIQLDRSLKELGFGKCTQKQVVYTRSEGEEC 346
                    + V  L K++YGL+QA R W ++   +L   GF +       + +      
Sbjct: 218 ARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLF 277

Query: 347 VLVEVYVDNLIVAGNSTEKVNKFKQQMMAEFEMSHLGLLSYYLGIEVEQQKGRILLKQPT 406
           + V VYVD++I+  N+   V++ K Q+ + F++  LG L Y+LG+E+ +    I + Q  
Sbjct: 278 LCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRK 337

Query: 407 YAKRILSQFGMADCNATKYPMEPKAQLHKDMEGAPIEATEYRNIVGCLRYLLNTRPNLSY 466
           YA  +L + G+  C  +  PM+P         G  ++A  YR ++G L YL  TR ++S+
Sbjct: 338 YALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISF 397

Query: 467 VFGMASKYMERPTTIHYKVVKQILRYLRGTIHFGLTYTKGPRQFDILGYSDSDLVSDLDG 526
                S++ E P   H + V +IL Y++GT+  GL Y+    +  +  +SD+   S  D 
Sbjct: 398 AVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYS-SQAEMQLQVFSDASFQSCKDT 457

Query: 527 RKSTSGMKFYLNESLVSWNSQKQKTVTLSSCKAEFIAATTAACQALWLRCIVSEIVRMEP 586
           R+ST+G   +L  SL+SW S+KQ+ V+ SS +AE+ A + A  + +WL     E+     
Sbjct: 458 RRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLS 517

Query: 587 RSVTLFVDNKSAIALMKNPVFHGCGKHIDTCFHFIQE 614
           +   LF DN +AI +  N VFH   KHI++  H ++E
Sbjct: 518 KPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]
BLAST of CSPI07G13050 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-32
Identity = 72/223 (32.29%), Postives = 126/223 (56.50%), Query Frame = 1 

Query: 341 VYVDNLIVAGNSTEKVNKFKQQMMAEFEMSHLGLLSYYLGIEVEQQKGRILLKQPTYAKR 400
           +YVD++++ G+S   +N    Q+ + F M  LG + Y+LGI+++     + L Q  YA++
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 401 ILSQFGMADCNATKYPMEPKAQLHKDMEGAPIEATEYRNIVGCLRYLLNTRPNLSYVFGM 460
           IL+  GM DC     P+  K          P + +++R+IVG L+YL  TRP++SY   +
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNI 124

Query: 461 ASKYMERPTTIHYKVVKQILRYLRGTIHFGLTYTKGPRQFDILGYSDSDLVSDLDGRKST 520
             + M  PT   + ++K++LRY++GTI  GL Y     + ++  + DSD       R+ST
Sbjct: 125 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGL-YIHKNSKLNVQAFCDSDWAGCTSTRRST 184

Query: 521 SGMKFYLNESLVSWNSQKQKTVTLSSCKAEFIAATTAACQALW 564
           +G   +L  +++SW++++Q TV+ SS + E+ A    A +  W
Sbjct: 185 TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]
BLAST of CSPI07G13050 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 63.5 bits (153), Expect = 5.5e-10
Identity = 36/88 (40.91%), Postives = 46/88 (52.27%), Query Frame = 1 

Query: 162 LKRPNWYKVMENELKSIEKNNTWSLTKLPPGHKPIGLKWVFKLKKDPSVEVVKHNARLVA 221
           LK P W + M+ EL ++ +N TW L   P     +G KWVFK K      + +  ARLVA
Sbjct: 35  LKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVA 94

Query: 222 K------GIDFEEVLAPVARLDTVRVIL 244
           K      GI F E  +PV R  T+R IL
Sbjct: 95  KGFHQEEGIYFVETYSPVVRTATIRTIL 122

[Close]
BLAST of CSPI07G13050 vs. NCBI nr
Match: gi|218201855|gb|EEC84282.1| (hypothetical protein OsI_30754 [Oryza sativa Indica Group])

HSP 1 Score: 763.8 bits (1971), Expect = 2.4e-217
Identity = 402/716 (56.15%), Postives = 494/716 (68.99%), Query Frame = 1 

Query: 2    GRKPHLAHLRVFGCVAYVKTTTPHLKKLDDRSSPVVYFGVEEGCKAHRLYDPGREKLQIS 61
            GRKP L HLRVFGC+A+ K TTP+ KKLDDRS+P VY GVEEG KAHRL+DP   ++ +S
Sbjct: 713  GRKPQLGHLRVFGCIAHAKITTPNQKKLDDRSAPYVYLGVEEGSKAHRLFDPRCGRIHVS 772

Query: 62   RDVVFQENLEWPWNEVVSDGKEITEFQVMDQFCSDEFENLEDAETRVENVIPHATEIPAI 121
            RDV+F+EN+ W W+ VV+  +  TEF V      ++  +   A      V  +    PA+
Sbjct: 773  RDVIFEENVPWQWS-VVAGEQNSTEFTV-----EEDGVDAPPAGAPAYPVPRYRAPSPAV 832

Query: 122  -----------------------GATGPSPPSTNT------------------PVRLRSL 181
                                    +T PS P+T +                  PVR RSL
Sbjct: 833  PQSPLASPVGASPSLPTSPQSSPSSTPPSTPATGSVGPVASPGSSGDLRSDEGPVRFRSL 892

Query: 182  THIYINTEEV-VGGDEQENEKLLK-------------RPNWYKVMENELKSIEKNNTWSL 241
              I      V +  DE + + LL              +P W   M  EL++IEKN+TW+L
Sbjct: 893  EDIMREAPRVDLVEDEHDGDALLAEMEEPSSYREAAGQPAWENAMAQELQAIEKNSTWAL 952

Query: 242  TKLPPGHKPIGLKWVFKLKKDPSVEVVKHNARLVAK------GIDFEEVLAPVARLDTVR 301
            T LP GHKPIGLKWV+KLKK+ + EV+KH ARLVAK      G+DFEEV APVARLDTVR
Sbjct: 953  TALPAGHKPIGLKWVYKLKKNTAGEVIKHKARLVAKGYVQRQGVDFEEVFAPVARLDTVR 1012

Query: 302  VILVLVANQSWEVHHLDVKSTFLNGELEEEVYVTQSEGFEVPNKKHKVHRLSKALYGLRQ 361
            VIL + A++ WEVHHLDVKS FLNG+LEEEVYV Q EGF    ++H V RLSKALYGLRQ
Sbjct: 1013 VILAIAADRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKRGEEHLVLRLSKALYGLRQ 1072

Query: 362  APRAWNIQLDRSLKELGFGKCTQKQVVYTRSEGEECVLVEVYVDNLIVAGNSTEKVNKFK 421
            APRAWN +LD+ LKELGF +CTQ+Q VYTR +G+  V+V VYVD+LIV G + +++  FK
Sbjct: 1073 APRAWNTRLDKCLKELGFARCTQEQAVYTRGKGQAGVIVGVYVDDLIVTGENPQEIAMFK 1132

Query: 422  QQMMAEFEMSHLGLLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMADCNATKYPMEPK 481
            QQMM EFEMS LGLLSYYLGIEV Q +  I +KQ  YAK+ILSQFGM  CN T  PMEP+
Sbjct: 1133 QQMMGEFEMSDLGLLSYYLGIEVIQGENGIAIKQAAYAKKILSQFGMQGCNPTSIPMEPR 1192

Query: 482  AQLHKDMEGAPIEATEYRNIVGCLRYLLNTRPNLSYVFGMASKYMERPTTIHYKVVKQIL 541
            + LHKD +G PI+ATEYR ++GCLRYLL+TRP+LSY  G+AS++MERPTT+H K VK IL
Sbjct: 1193 SLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFMERPTTMHLKAVKMIL 1252

Query: 542  RYLRGTIHFGLTYTKGPRQFDILGYSDSDLVSDLDGRKSTSGMKFYLNESLVSWNSQKQK 601
            RYL+GT+  GL +  G    DI G++DSDL  D+D R+ST GM FY+N SLVSW SQKQK
Sbjct: 1253 RYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFYVNSSLVSWCSQKQK 1312

Query: 602  TVTLSSCKAEFIAATTAACQALWLRCIVSEIVRMEPRSVTLFVDNKSAIALMKNPVFHGC 657
            TV LSSC+AEF+AAT AAC ALWLR ++SE++  E + V LFVDNKSAIALMKNPVFHG 
Sbjct: 1313 TVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKPVKLFVDNKSAIALMKNPVFHGR 1372

[Close]
BLAST of CSPI07G13050 vs. NCBI nr
Match: gi|108706239|gb|ABF94034.1| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 763.1 bits (1969), Expect = 4.1e-217
Identity = 396/722 (54.85%), Postives = 495/722 (68.56%), Query Frame = 1 

Query: 2    GRKPHLAHLRVFGCVAYVKTTTPHLKKLDDRSSPVVYFGVEEGCKAHRLYDPGREKLQIS 61
            GRKP L HL+VFGC A+ K T PHLKKLDDRS+P VY GVEEG KAHRL+DP R ++ +S
Sbjct: 691  GRKPQLGHLKVFGCTAHAKNTQPHLKKLDDRSAPYVYLGVEEGSKAHRLFDPRRGRIHVS 750

Query: 62   RDVVFQENLEWPWNEVVSDGKEITEFQVMDQFCSDEFENLEDAETRVENVIPH------- 121
            RDVVF+EN+ W W      G+E T+F + ++      E L    T    V P+       
Sbjct: 751  RDVVFEENVPWEWTSAA--GQEPTDFAMEEE----PGEQLPSPATAAGVVPPYQAPSPGR 810

Query: 122  ---------ATEIPAI-----------GATGPSPPSTNT------------------PVR 181
                     A E+P+            G   P  PSTN+                  P R
Sbjct: 811  RAGKEAVVAAEEVPSPASPVAASPTLPGTPTPGSPSTNSAGVVPSPGTDDNIDTDDGPRR 870

Query: 182  LRSLTHIYINTEEV-VGGDEQENEKLLK-------------RPNWYKVMENELKSIEKNN 241
             RSL  +      V +  DE + E LL              +P W + M+ E+++IEKN 
Sbjct: 871  YRSLADVLREAPRVDLVEDECDGEALLAESEEPSSYREAAGQPAWEEAMQREMEAIEKNK 930

Query: 242  TWSLTKLPPGHKPIGLKWVFKLKKDPSVEVVKHNARLVAKG------IDFEEVLAPVARL 301
            TW L  LP GH+ IGLKWV+KLKK+ + E++KH ARLVAKG      +DFEEV APVARL
Sbjct: 931  TWELAMLPAGHRAIGLKWVYKLKKNTAGEIIKHKARLVAKGYVQKQGVDFEEVFAPVARL 990

Query: 302  DTVRVILVLVANQSWEVHHLDVKSTFLNGELEEEVYVTQSEGFEVPNKKHKVHRLSKALY 361
            DTVRV+L + A++ W+VHHLDVKS FLNGELEEEVYV Q EGF    K+H V +L KALY
Sbjct: 991  DTVRVVLAVAADRRWQVHHLDVKSAFLNGELEEEVYVAQPEGFARSGKEHLVLKLHKALY 1050

Query: 362  GLRQAPRAWNIQLDRSLKELGFGKCTQKQVVYTRSEGEECVLVEVYVDNLIVAGNSTEKV 421
            GLRQAPRAWNI+LDRSL+ELGF +CTQ+Q VYTR  G + ++V VYVD+LIV G +  ++
Sbjct: 1051 GLRQAPRAWNIRLDRSLRELGFDRCTQEQAVYTRGRGSDGIIVGVYVDDLIVTGENPSEL 1110

Query: 422  NKFKQQMMAEFEMSHLGLLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMADCNATKYP 481
              FK+QMM EFEMS LGLL+YYLGIEV+Q +    LKQ  YAK++LSQFGM +CN+   P
Sbjct: 1111 KVFKEQMMGEFEMSDLGLLTYYLGIEVDQDESATTLKQTAYAKKLLSQFGMMECNSVSIP 1170

Query: 482  MEPKAQLHKDMEGAPIEATEYRNIVGCLRYLLNTRPNLSYVFGMASKYMERPTTIHYKVV 541
            ++P++QL KD EG P++ATEYR I+G LRYLL+TRP+LSY  G+AS++MERPT +H+K V
Sbjct: 1171 IDPRSQLSKDPEGHPVDATEYRRIIGSLRYLLHTRPDLSYAVGVASRFMERPTVMHFKAV 1230

Query: 542  KQILRYLRGTIHFGLTYTKGPRQFDILGYSDSDLVSDLDGRKSTSGMKFYLNESLVSWNS 601
            KQILRY++GT+ +GL Y  G     I GY+DSDL  DLD R+ST GM FY+N+SLV+W+S
Sbjct: 1231 KQILRYIKGTMDYGLVYAAGTGALKITGYTDSDLAGDLDDRRSTGGMAFYINQSLVAWSS 1290

Query: 602  QKQKTVTLSSCKAEFIAATTAACQALWLRCIVSEIVRMEPRSVTLFVDNKSAIALMKNPV 659
            QKQKTV LSSC+AEF+AATTAACQALWLR +++E+  +E ++V LFVDN+SAIALMKNPV
Sbjct: 1291 QKQKTVALSSCEAEFMAATTAACQALWLRLLLAEVAGVEEKAVKLFVDNRSAIALMKNPV 1350

[Close]
BLAST of CSPI07G13050 vs. NCBI nr
Match: gi|113622864|dbj|BAF22809.1| (Os08g0125300 [Oryza sativa Japonica Group])

HSP 1 Score: 762.7 bits (1968), Expect = 5.3e-217
Identity = 402/716 (56.15%), Postives = 492/716 (68.72%), Query Frame = 1 

Query: 2    GRKPHLAHLRVFGCVAYVKTTTPHLKKLDDRSSPVVYFGVEEGCKAHRLYDPGREKLQIS 61
            GRKP L HLRVFGC+A+ K TTP+ KKLDDRS+P VY GVEEG KAHRL+DP   ++ +S
Sbjct: 713  GRKPQLGHLRVFGCIAHAKITTPNQKKLDDRSAPYVYLGVEEGSKAHRLFDPRCGRIHVS 772

Query: 62   RDVVFQENLEWPWNEVVSDGKEITEFQVMDQFCSDEFENLEDAETRVENVIPHATEIPAI 121
            RDV+F+EN+ W W+ VV+  +  TEF V      ++  +   A      V  +    PA+
Sbjct: 773  RDVIFEENVPWQWS-VVAGEQNSTEFTV-----EEDGVDAPPAGAPAYPVPRYRAPSPAV 832

Query: 122  -----------------------GATGPSPPSTNT------------------PVRLRSL 181
                                    +T PS P+T +                  PVR RSL
Sbjct: 833  PQSPPASPVGASSSLPTSPQSSPSSTPPSTPATGSAGPVASPGSGGDLRSDEGPVRFRSL 892

Query: 182  THIYINTEEV-VGGDEQENEKLLK-------------RPNWYKVMENELKSIEKNNTWSL 241
              I      V +  DE + + LL              +P W   M  EL++IEKN+TW+L
Sbjct: 893  EDIMREAPRVDLVEDEHDGDALLAEMEEPSSYREAAGQPAWENAMAQELQAIEKNSTWAL 952

Query: 242  TKLPPGHKPIGLKWVFKLKKDPSVEVVKHNARLVAK------GIDFEEVLAPVARLDTVR 301
            T LP GHKPIGLKWV+KLKK+ + EV+KH ARLVAK      G+DFEEV APVARLDTVR
Sbjct: 953  TALPAGHKPIGLKWVYKLKKNTAGEVIKHKARLVAKGYVQRQGVDFEEVFAPVARLDTVR 1012

Query: 302  VILVLVANQSWEVHHLDVKSTFLNGELEEEVYVTQSEGFEVPNKKHKVHRLSKALYGLRQ 361
            VIL + A++ WEVHHLDVKS FLNG+LEEEVYV Q EGF    ++H V RLSKALYGLRQ
Sbjct: 1013 VILAIAADRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKRGEEHLVLRLSKALYGLRQ 1072

Query: 362  APRAWNIQLDRSLKELGFGKCTQKQVVYTRSEGEECVLVEVYVDNLIVAGNSTEKVNKFK 421
            APRAWN +LD+ LKELGF +CTQ+Q VYTR +G+  V+V VYVD+LIV G +  ++  FK
Sbjct: 1073 APRAWNTRLDKCLKELGFARCTQEQAVYTRGKGQAGVIVGVYVDDLIVTGENPHEIAMFK 1132

Query: 422  QQMMAEFEMSHLGLLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMADCNATKYPMEPK 481
            QQMM EFEMS LGLLSYYLGIEV Q +  I +KQ  YAK+ILSQFGM  CN T  PMEP+
Sbjct: 1133 QQMMGEFEMSDLGLLSYYLGIEVIQGENGIAIKQAAYAKKILSQFGMQGCNPTSIPMEPR 1192

Query: 482  AQLHKDMEGAPIEATEYRNIVGCLRYLLNTRPNLSYVFGMASKYMERPTTIHYKVVKQIL 541
            + LHKD +G PI+ATEYR ++GCLRYLL+TRP+LSY  G+AS++MERPTT+H K VK IL
Sbjct: 1193 SLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFMERPTTMHLKAVKMIL 1252

Query: 542  RYLRGTIHFGLTYTKGPRQFDILGYSDSDLVSDLDGRKSTSGMKFYLNESLVSWNSQKQK 601
            RYL+GT+  GL +  G    DI G++DSDL  D+D R+ST GM FY+N SLVSW SQKQK
Sbjct: 1253 RYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFYVNSSLVSWCSQKQK 1312

Query: 602  TVTLSSCKAEFIAATTAACQALWLRCIVSEIVRMEPRSVTLFVDNKSAIALMKNPVFHGC 657
            TV LSSC+AEF+AAT AAC ALWLR ++SE++  E + V LFVDNKSAIALMKNPVFHG 
Sbjct: 1313 TVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKRVKLFVDNKSAIALMKNPVFHGR 1372

[Close]
BLAST of CSPI07G13050 vs. NCBI nr
Match: gi|110289052|gb|ABB47537.2| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 647.5 bits (1669), Expect = 2.5e-182
Identity = 348/662 (52.57%), Postives = 436/662 (65.86%), Query Frame = 1 

Query: 2    GRKPHLAHLRVFGCVAYVKTTTPHLKKLDDRSSPVVYFGVEEGCKAHRLYDPGREKLQIS 61
            G+KPHL HLRVFGC A+ K T PHLKKLDDRS+P VY GVEEG KAHRL+DP R ++ +S
Sbjct: 560  GKKPHLGHLRVFGCTAHAKVTAPHLKKLDDRSNPFVYLGVEEGSKAHRLFDPRRRQIIVS 619

Query: 62   RDVVFQENLEWPWNEVVSDGKEITEFQVMDQFCSDEFENLEDAETRVENVIPHATEIPAI 121
            RDVVF EN  W W+    +    TEF+V +   +++    E A                 
Sbjct: 620  RDVVFDENTPWQWSAAAGEVTS-TEFEVEEPVGAEQPALAEQA----------------- 679

Query: 122  GATGPSPPSTNT-PVRLRSLTHIYINTEEVVGGDEQENEKLLK--------------RPN 181
            G   P    ++  PVR RSL  I +    V   ++ ++ + L                P 
Sbjct: 680  GLASPHTAGSDVGPVRYRSLAEIMLEAPRVDLVEDDDDARALLAEMEEPLSYREATGEPA 739

Query: 182  WYKVMENELKSIEKNNTWSLTKLPPGHKPIGLKWVFKLKKDPSVEVVKHNARLVA----- 241
            W   M  EL++IEKN TWSL  LP GHK IGLKWVFKLKK+ + EV+KH ARLVA     
Sbjct: 740  WVNAMNKELEAIEKNKTWSLCMLPAGHKAIGLKWVFKLKKNTAGEVIKHKARLVANGYVQ 799

Query: 242  -KGIDFEEVLAPVARLDTVRVILVLVANQSWEVHHLDVKSTFLNGELEEEVYVTQSEGFE 301
             +G+DF+EV APVARLDTVR IL + A++ W+VHHLDVKS FLNG+LEEEVYV+Q EGF 
Sbjct: 800  QQGVDFDEVFAPVARLDTVRAILAVAADRRWQVHHLDVKSAFLNGDLEEEVYVSQLEGFV 859

Query: 302  VPNKKHKVHRLSKALYGLRQAPRAWNIQLDR---SLKELGFGKCTQKQVVYTRSEGEECV 361
               K+H V+ LSKALYGLR   +A      R   S+KELGF + ++              
Sbjct: 860  EKGKEHLVYELSKALYGLR---QAPRAWNTRLDRSMKELGFSRPSE-------------- 919

Query: 362  LVEVYVDNLIVAGNSTEKVNKFKQQMMAEFEMSHLGLLSYYLGIEVEQQKGRILLKQPTY 421
                              +  FKQQMM EFE+S LGLL+YYLGIEV Q    I +KQ  Y
Sbjct: 920  ------------------ITAFKQQMMGEFEISDLGLLTYYLGIEVLQGTDGIAIKQAAY 979

Query: 422  AKRILSQFGMADCNATKYPMEPKAQLHKDMEGAPIEATEYRNIVGCLRYLLNTRPNLSYV 481
            A++IL+QFGM DCN+T  P+E ++QLHK  EG+ ++ TEYR ++GCLRYLL+T+P+LSY 
Sbjct: 980  ARKILTQFGMLDCNSTSIPIEHRSQLHKVAEGSTVDPTEYRRVIGCLRYLLHTQPDLSYA 1039

Query: 482  FGMASKYMERPTTIHYKVVKQILRYLRGTIHFGLTYTKGPRQFDILGYSDSDLVSDLDGR 541
             G+ SK+ME+ T +H+K VKQILRYL+GTI+ GL ++ G    +I G++DSDL  D D R
Sbjct: 1040 VGVVSKFMEQLTVMHFKAVKQILRYLKGTINCGLMFSGGNDAVEITGFTDSDLAGDSDDR 1099

Query: 542  KSTSGMKFYLNESLVSWNSQKQKTVTLSSCKAEFIAATTAACQALWLRCIVSEIVRMEPR 601
            +STSGM FY N SLVSW+SQKQKTV LSSC+AEF+AAT AACQALWLR ++ E++  E R
Sbjct: 1100 RSTSGMAFYFNSSLVSWSSQKQKTVALSSCEAEFMAATAAACQALWLRGLLIEMIGAEAR 1159

Query: 602  SVTLFVDNKSAIALMKNPVFHGCGKHIDTCFHFIQECVENGQIIVEFVNTREQRADVLTK 640
             V L+VDNKSAIALMKNPVFHG  KHIDT +HFI+ECVE+G+I +EFV T EQRAD LTK
Sbjct: 1160 PVKLYVDNKSAIALMKNPVFHGRSKHIDTRYHFIRECVESGKIQIEFVRTEEQRADALTK 1168

[Close]
BLAST of CSPI07G13050 vs. NCBI nr
Match: gi|29150404|gb|AAO72413.1| (gag-pol polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 643.7 bits (1659), Expect = 3.6e-181
Identity = 359/712 (50.42%), Postives = 442/712 (62.08%), Query Frame = 1 

Query: 2    GRKPHLAHLRVFGCVAYVKTTTPHLKKLDDRSSPVVYFGVEEGCKAHRLYDPGREKLQIS 61
            G+KPHL HLRVFGC A+ K T PHLKKLDDRS+PVVY GVEEG KAHRL+DP R ++ +S
Sbjct: 666  GKKPHLGHLRVFGCTAHAKVTAPHLKKLDDRSNPVVYLGVEEGSKAHRLFDPRRRQIIVS 725

Query: 62   RDVVFQENLEWPWNEVVSDGKEITEFQVMDQFCSDEFENLEDAET----RVENVIPHATE 121
            RDVVF EN  W W+    +    TEF+V +   +++    E A +    R       A +
Sbjct: 726  RDVVFDENTPWQWSAAAGEVTS-TEFEVEEPVGAEQPAPAEQAGSVPWYRAPPAGRRAGK 785

Query: 122  IPAIGATGPSPP----------------------------------STNTPVRLRSLTHI 181
             P +     +PP                                  S + PVR RSL  I
Sbjct: 786  EPEVAEQRGTPPASPARFSPTLPSTPTLGSSSTHSAEVQASPRTAGSDDEPVRYRSLAEI 845

Query: 182  YINTEEV-VGGDEQENEKLL-------------KRPNWYKVMENELKSIEKNNTWSLTKL 241
             I    V +  D+ + E LL               P W   M  EL++IEKN TWSL  L
Sbjct: 846  MIEAPRVDLVEDDDDTEALLVEMEEPTSYREAAGEPAWVNAMNKELEAIEKNKTWSLCML 905

Query: 242  PPGHKPIGLKWVFKLKKDPSVEVVKHNARLVAK------GIDFEEVLAPVARLDTVRVIL 301
            P  HK IGLKWVFKLKK+ + EV+KH ARLVAK      G+DF+EV APVARLDTVR IL
Sbjct: 906  PASHKAIGLKWVFKLKKNTAGEVIKHKARLVAKGYVQRQGVDFDEVFAPVARLDTVRAIL 965

Query: 302  VLVANQSWEVHHLDVKSTFLNGELEEEVYVTQSEGFEVPNKKHKVHRLSKALYGLRQAPR 361
             +  ++ W+VHHLDVKS FLNG+LEEEVYV+Q EGF    K+H V++LSKALYGLRQAPR
Sbjct: 966  PVAVDRRWQVHHLDVKSAFLNGDLEEEVYVSQPEGFVEKGKEHLVYKLSKALYGLRQAPR 1025

Query: 362  AWNIQLDRSLKELGFGKCTQKQVVYTRSEGEECVLVEVYVDNLIVAGNSTEKVNKFKQQM 421
            AWN +LDRS+KELGF +C Q+Q VYTR  G   ++V VYVD+LIV G S   +  FKQQM
Sbjct: 1026 AWNTRLDRSMKELGFSRCAQEQAVYTRGTGSTGIIVGVYVDDLIVTGESPSDITAFKQQM 1085

Query: 422  MAEFEMSHLGLLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMADCNATKYPMEPKAQL 481
            M EFEMS LGLL+YYLGIE+ +      +  PT  +R++                 +  L
Sbjct: 1086 MGEFEMSDLGLLTYYLGIELHKDAQGSTV-DPTEYRRVIGCL--------------RYLL 1145

Query: 482  HKDMEGAPIEATEYRNIVGCLRYLLNTRPNLSYVFGMASKYMERPTTIHYKVVKQILRYL 541
            H                          RP+LSY  G+AS++MERPT +H+K VKQILRYL
Sbjct: 1146 HT-------------------------RPDLSYAVGVASRFMERPTVMHFKAVKQILRYL 1205

Query: 542  RGTIHFGLTYTKGPRQFDILGYSDSDLVSDLDGRKSTSGMKFYLNESLVSWNSQKQKTVT 601
            +GTI+ GL ++ G    +I G++DSDL  D D R+STSGM FY N SLVSW+SQKQKTV 
Sbjct: 1206 KGTINCGLMFSGGNGAVEITGFTDSDLAGDSDDRRSTSGMAFYFNGSLVSWSSQKQKTVA 1265

Query: 602  LSSCKAEFIAATTAACQALWLRCIVSEIVRMEPRSVTLFVDNKSAIALMKNPVFHGCGKH 656
            LSSC+AEF+AAT AAC ALWLR ++ E++  E R V L+VDNKSAIALMKNPVFHG  KH
Sbjct: 1266 LSSCEAEFMAATAAACHALWLRGLLIEMIGAEARPVKLYVDNKSAIALMKNPVFHGRSKH 1325

The following BLAST results are available for this feature:
BLAST of CSPI07G13050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC3.6e-10434.78Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME1.6e-8334.92Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
YCH4_YEAST2.5e-3331.02Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
M810_ARATH2.4e-3132.29Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0... [more]
YH41B_YEAST1.6e-1920.11Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
BLAST of CSPI07G13050 vs. TrEMBL
Match NameE-valueIdentityDescription
B8BDZ6_ORYSI1.7e-21756.15Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4... [more]
Q10RM4_ORYSJ2.9e-21754.85Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
Q0J8A6_ORYSJ3.7e-21756.15Os08g0125300 protein OS=Oryza sativa subsp. japonica GN=Os08g0125300 PE=2 SV=1[more]
Q338J6_ORYSJ1.7e-18252.57Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
Q84SW8_ORYSJ2.5e-18150.42Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1[more]
BLAST of CSPI07G13050 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.12.8e-7533.70 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00810.11.3e-3232.29ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
ATMG00820.15.5e-1040.91ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)[more]
BLAST of CSPI07G13050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|218201855|gb|EEC84282.1|2.4e-21756.15hypothetical protein OsI_30754 [Oryza sativa Indica Group][more]
gi|108706239|gb|ABF94034.1|4.1e-21754.85retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group][more]
gi|113622864|dbj|BAF22809.1|5.3e-21756.15Os08g0125300 [Oryza sativa Japonica Group][more]
gi|110289052|gb|ABB47537.2|2.5e-18252.57retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group][more]
gi|29150404|gb|AAO72413.1|3.6e-18150.42gag-pol polyprotein [Oryza sativa Japonica Group][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009536 plastid
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G13050.1CSPI07G13050.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 181..418
score: 8.5
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..578
score: 4.7E
NoneNo IPR availablePANTHERPTHR11439:SF127SUBFAMILY NOT NAMEDcoord: 1..578
score: 4.7E
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 180..397
score: 7.78E-26coord: 422..609
score: 7.78

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G13050Silver-seed gourdcarcpiB0324
CSPI07G13050Silver-seed gourdcarcpiB1050
CSPI07G13050Cucumber (Chinese Long) v3cpicucB414
CSPI07G13050Watermelon (97103) v2cpiwmbB597
CSPI07G13050Wax gourdcpiwgoB708
CSPI07G13050Cucumber (Gy14) v1cgycpiB079
CSPI07G13050Cucurbita maxima (Rimu)cmacpiB045
CSPI07G13050Cucurbita maxima (Rimu)cmacpiB493
CSPI07G13050Cucurbita moschata (Rifu)cmocpiB035
CSPI07G13050Cucurbita moschata (Rifu)cmocpiB484
CSPI07G13050Cucumber (Chinese Long) v2cpicuB354
CSPI07G13050Melon (DHL92) v3.5.1cpimeB529
CSPI07G13050Watermelon (Charleston Gray)cpiwcgB554
CSPI07G13050Watermelon (97103) v1cpiwmB586
CSPI07G13050Cucurbita pepo (Zucchini)cpecpiB593
CSPI07G13050Cucurbita pepo (Zucchini)cpecpiB801
CSPI07G13050Bottle gourd (USVL1VR-Ls)cpilsiB517
CSPI07G13050Melon (DHL92) v3.6.1cpimedB517
CSPI07G13050Cucumber (Gy14) v2cgybcpiB331