CSPI07G12600 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G12600
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr7 : 10890317 .. 10890652 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGCAAAGCTTCCATTATCTGTATGGGGTCATGCTATTCTGCATGTAGCGTCAGTTATACGCATAAGACCGACATCTTATCCTAAGTACGCTCTGGTACAATTAGCTTATGGCCAGGAGCCAAATACTTCATATTTGCGAATTTTTTATTGTGGAGTATATGTTCCAATTTTCCCACCACAACGTACTAAAATGGGATCTCAAAGAAGGTTAGGAATATATGTTGGATTTGAAACCCCATCAGTTATTCGATATCTTGAACCCCTAACGAATGATGTATTTACTGCACAATTTGCTGATTATCATTTTAATGAGACAATTTTCCAACATTAG

mRNA sequence

ATGAGAGCAAAGCTTCCATTATCTGTATGGGGTCATGCTATTCTGCATGTAGCGTCAGTTATACGCATAAGACCGACATCTTATCCTAAGTACGCTCTGGTACAATTAGCTTATGGCCAGGAGCCAAATACTTCATATTTGCGAATTTTTTATTGTGGAGTATATGTTCCAATTTTCCCACCACAACGTACTAAAATGGGATCTCAAAGAAGGTTAGGAATATATGTTGGATTTGAAACCCCATCAGTTATTCGATATCTTGAACCCCTAACGAATGATGTATTTACTGCACAATTTGCTGATTATCATTTTAATGAGACAATTTTCCAACATTAG

Coding sequence (CDS)

ATGAGAGCAAAGCTTCCATTATCTGTATGGGGTCATGCTATTCTGCATGTAGCGTCAGTTATACGCATAAGACCGACATCTTATCCTAAGTACGCTCTGGTACAATTAGCTTATGGCCAGGAGCCAAATACTTCATATTTGCGAATTTTTTATTGTGGAGTATATGTTCCAATTTTCCCACCACAACGTACTAAAATGGGATCTCAAAGAAGGTTAGGAATATATGTTGGATTTGAAACCCCATCAGTTATTCGATATCTTGAACCCCTAACGAATGATGTATTTACTGCACAATTTGCTGATTATCATTTTAATGAGACAATTTTCCAACATTAG
Homology
[Close]
BLAST of CSPI07G12600 vs. TrEMBL
Match: A0A151UBQ7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_020966 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.3e-41
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 1   MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFP 60
           MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI P
Sbjct: 103 MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 162

Query: 61  PQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFADYHFNETIF 110
           PQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FAD HFNE IF
Sbjct: 163 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIF 211

[Close]
BLAST of CSPI07G12600 vs. TrEMBL
Match: A0A151UD30_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_021468 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.3e-41
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 1   MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFP 60
           MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI P
Sbjct: 102 MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 161

Query: 61  PQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFADYHFNETIF 110
           PQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FAD HFNE IF
Sbjct: 162 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIF 210

[Close]
BLAST of CSPI07G12600 vs. TrEMBL
Match: A0A151SJC6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_001031 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.3e-41
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 1   MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFP 60
           MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI P
Sbjct: 171 MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 230

Query: 61  PQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFADYHFNETIF 110
           PQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FAD HFNE IF
Sbjct: 231 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIF 279

[Close]
BLAST of CSPI07G12600 vs. TrEMBL
Match: A0A151RXV3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_031006 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.3e-41
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 1   MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFP 60
           MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI P
Sbjct: 99  MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 158

Query: 61  PQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFADYHFNETIF 110
           PQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FAD HFNE IF
Sbjct: 159 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIF 207

[Close]
BLAST of CSPI07G12600 vs. TrEMBL
Match: A0A151RKM1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_035489 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.3e-41
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 1   MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFP 60
           MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI P
Sbjct: 99  MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 158

Query: 61  PQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFADYHFNETIF 110
           PQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FAD HFNE IF
Sbjct: 159 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIF 207

[Close]
BLAST of CSPI07G12600 vs. NCBI nr
Match: gi|1012365532|gb|KYP76714.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 175.3 bits (443), Expect = 6.2e-41
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 1   MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFP 60
           MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI P
Sbjct: 103 MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 162

Query: 61  PQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFADYHFNETIF 110
           PQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FAD HFNE IF
Sbjct: 163 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIF 211

[Close]
BLAST of CSPI07G12600 vs. NCBI nr
Match: gi|1012343639|gb|KYP54831.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 175.3 bits (443), Expect = 6.2e-41
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 1   MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFP 60
           MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI P
Sbjct: 171 MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 230

Query: 61  PQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFADYHFNETIF 110
           PQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FAD HFNE IF
Sbjct: 231 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIF 279

[Close]
BLAST of CSPI07G12600 vs. NCBI nr
Match: gi|1012336081|gb|KYP47392.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 175.3 bits (443), Expect = 6.2e-41
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 1   MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFP 60
           MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI P
Sbjct: 99  MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 158

Query: 61  PQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFADYHFNETIF 110
           PQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FAD HFNE IF
Sbjct: 159 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIF 207

[Close]
BLAST of CSPI07G12600 vs. NCBI nr
Match: gi|1012331625|gb|KYP43092.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 175.3 bits (443), Expect = 6.2e-41
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 1   MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFP 60
           MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI P
Sbjct: 99  MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 158

Query: 61  PQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFADYHFNETIF 110
           PQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FAD HFNE IF
Sbjct: 159 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIF 207

[Close]
BLAST of CSPI07G12600 vs. NCBI nr
Match: gi|1012366011|gb|KYP77193.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 175.3 bits (443), Expect = 6.2e-41
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 1   MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFP 60
           MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI P
Sbjct: 102 MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 161

Query: 61  PQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFADYHFNETIF 110
           PQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FAD HFNE IF
Sbjct: 162 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIF 210

The following BLAST results are available for this feature:
BLAST of CSPI07G12600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G12600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151UBQ7_CAJCA4.3e-4172.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu... [more]
A0A151UD30_CAJCA4.3e-4172.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu... [more]
A0A151SJC6_CAJCA4.3e-4172.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151RXV3_CAJCA4.3e-4172.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151RKM1_CAJCA4.3e-4172.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
BLAST of CSPI07G12600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G12600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012365532|gb|KYP76714.1|6.2e-4172.48Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca... [more]
gi|1012343639|gb|KYP54831.1|6.2e-4172.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012336081|gb|KYP47392.1|6.2e-4172.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012331625|gb|KYP43092.1|6.2e-4172.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012366011|gb|KYP77193.1|6.2e-4172.48Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0090304 nucleic acid metabolic process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G12600.1CSPI07G12600.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..109
score: 2.5
NoneNo IPR availablePANTHERPTHR11439:SF180SUBFAMILY NOT NAMEDcoord: 1..109
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G12600Cucsa.079580Cucumber (Gy14) v1cgycpiB079
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G12600Cucumber (Chinese Long) v2cpicuB354
CSPI07G12600Melon (DHL92) v3.5.1cpimeB528
CSPI07G12600Watermelon (Charleston Gray)cpiwcgB554
CSPI07G12600Watermelon (97103) v1cpiwmB586
CSPI07G12600Cucurbita pepo (Zucchini)cpecpiB593
CSPI07G12600Cucurbita pepo (Zucchini)cpecpiB801
CSPI07G12600Bottle gourd (USVL1VR-Ls)cpilsiB517
CSPI07G12600Melon (DHL92) v3.6.1cpimedB514
CSPI07G12600Cucumber (Gy14) v2cgybcpiB331
CSPI07G12600Silver-seed gourdcarcpiB0307
CSPI07G12600Cucumber (Chinese Long) v3cpicucB414
CSPI07G12600Watermelon (97103) v2cpiwmbB597
CSPI07G12600Wax gourdcpiwgoB718
CSPI07G12600Cucurbita maxima (Rimu)cmacpiB045
CSPI07G12600Cucurbita maxima (Rimu)cmacpiB493
CSPI07G12600Cucurbita moschata (Rifu)cmocpiB035
CSPI07G12600Cucurbita moschata (Rifu)cmocpiB484