CSPI07G12550 (gene) Wild cucumber (PI 183967)

NameCSPI07G12550
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionHolocarboxylase synthetase
LocationChr7 : 10850125 .. 10851075 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTAAATGACTGTAATTTTGCTGGAGTTCACCAAATTTAGTGAAGGTTCATTTTATTATTATTTTATCTTTAGCTGTATGAGTTTTCTGAATTCCATTCTGACTCTGCAGAACGAGTTGGATTACTGTGGAGAGGAACCGTCGATGTCCCCAAGACCCGCAGTCCACCAACATCAACATGCTCAACCAACAATGCAGTTTACAAACTCAAGCTTTCCAGCCTCAGGTCTTTCTGGGCAAGCAACCACCGGACAAGGTAGTCGAACCGAGCACTCTGAGAATCATTCCAAAAGTTCAGTCTTCTCAAACGCTCTGTCTAGCCCTGTTCGCCGAAGTTTGCAACAGTATCACATTGCTCAGGAAGCTCACTACCCAAACAGCGGGATGTCGGGAGGAAATGGTGCCACTCGAAACAATGAACCCAACTTTCTTCAGCATCAAAACACTGACCCTAATTCAGTCAGCTCTAACGACTCGTCGATGGACATGCATGCAGACAGTCCTGCACATGATTCACATTACTGATTTTGGAGATCGCCAATCATATCTAAGTTTTATCAGCCTGTGACAACACATGCTCAAGTTCCTGGCTGCCAATGGCGTTTACTTTCTTTTGTTGGAAATTTCTTTAGGTCTTTTATCTGTAAAGGGTTTCTTCATAACAGAACCTGAAAGGGGAGAAAAAAAAAAAAAGGAAAGAAAACTGGAAGTTGCCAATACCGTTTGTCATTTATTATGCTGTTGTTTCAAACAGTGCTTTGTTTCCACCCCTCGTTTTTAGAACTGAACAATATCTTCTGTAGATTGGCAAAGTGTGTGGATCTGCTGAGTGAGAAATTATAGAATATGGTTTAGGGTTCATTTCCTCTCATATTTTCAAAACCCATGGTTTGAAGATGTCTTTGTATTCTTTGGGCAACTATGCCTATGGTACAGATAGGATGCTTCTTT

mRNA sequence

ATGACTGTAATTTTGCTGGAGTTCACCAAATTTAGTGAAGGTTCATTTTATTATTATTTTATCTTTAGCTGTATGAGTTTTCTGAATTCCATTCTGACTCTGCAGAACGAGTTGGATTACTGTGGAGAGGAACCGTCGATGTCCCCAAGACCCGCAGTCCACCAACATCAACATGCTCAACCAACAATGCAGTTTACAAACTCAAGCTTTCCAGCCTCAGGTCTTTCTGGGCAAGCAACCACCGGACAAGGTAGTCGAACCGAGCACTCTGAGAATCATTCCAAAAGTTCAGTCTTCTCAAACGCTCTGTCTAGCCCTGTTCGCCGAAGTTTGCAACAGTATCACATTGCTCAGGAAGCTCACTACCCAAACAGCGGGATGTCGGGAGGAAATGGTGCCACTCGAAACAATGAACCCAACTTTCTTCAGCATCAAAACACTGACCCTAATTCAGTCAGCTCTAACGACTCGTCGATGGACATGCATGCAGACAGTCCTGCACATGATTCACATTACTGA

Coding sequence (CDS)

ATGACTGTAATTTTGCTGGAGTTCACCAAATTTAGTGAAGGTTCATTTTATTATTATTTTATCTTTAGCTGTATGAGTTTTCTGAATTCCATTCTGACTCTGCAGAACGAGTTGGATTACTGTGGAGAGGAACCGTCGATGTCCCCAAGACCCGCAGTCCACCAACATCAACATGCTCAACCAACAATGCAGTTTACAAACTCAAGCTTTCCAGCCTCAGGTCTTTCTGGGCAAGCAACCACCGGACAAGGTAGTCGAACCGAGCACTCTGAGAATCATTCCAAAAGTTCAGTCTTCTCAAACGCTCTGTCTAGCCCTGTTCGCCGAAGTTTGCAACAGTATCACATTGCTCAGGAAGCTCACTACCCAAACAGCGGGATGTCGGGAGGAAATGGTGCCACTCGAAACAATGAACCCAACTTTCTTCAGCATCAAAACACTGACCCTAATTCAGTCAGCTCTAACGACTCGTCGATGGACATGCATGCAGACAGTCCTGCACATGATTCACATTACTGA
BLAST of CSPI07G12550 vs. TrEMBL
Match: A0A0A0K448_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298810 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.2e-76
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1

Query: 25  MSFLNSILTLQNELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFPASGLSGQATTGQG 84
           MSFLNSILTLQNELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFPASGLSGQATTGQG
Sbjct: 1   MSFLNSILTLQNELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFPASGLSGQATTGQG 60

Query: 85  SRTEHSENHSKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQH 144
           SRTEHSENHSKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQH
Sbjct: 61  SRTEHSENHSKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQH 120

Query: 145 QNTDPNSVSSNDSSMDMHADSPAHDSHY 173
           QNTDPNSVSSNDSSMDMHADSPAHDSHY
Sbjct: 121 QNTDPNSVSSNDSSMDMHADSPAHDSHY 148

BLAST of CSPI07G12550 vs. TrEMBL
Match: W9RDA2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023790 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.1e-38
Identity = 96/144 (66.67%), Postives = 109/144 (75.69%), Query Frame = 1

Query: 31  ILTLQNELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFP-ASGLSGQATTGQGSRTEH 90
           ++ +QNELDYCGEEPSMSPR  + Q+QH Q  M  TNS FP +SG S     GQ   TEH
Sbjct: 92  LVPMQNELDYCGEEPSMSPR-VLAQNQHTQAPMHSTNSGFPVSSGSSVPTNAGQRVHTEH 151

Query: 91  SENHSKSSVFSNALSSPVRRSLQQYHIAQE-AHYPNSGMSGGNGATRNNEPNFLQHQNTD 150
            ++ SK+SVFSNALSSPVRRSLQ YHI+QE  +YPNS +S GNG  RNNEPNFLQ QN D
Sbjct: 152 CDHQSKNSVFSNALSSPVRRSLQHYHISQERGYYPNSSLSSGNG-PRNNEPNFLQPQNRD 211

Query: 151 PNSVSSNDSSMDMHADSPAHDSHY 173
            N  SSNDSSMDMHADSPA DS+Y
Sbjct: 212 SNPPSSNDSSMDMHADSPAQDSNY 233

BLAST of CSPI07G12550 vs. TrEMBL
Match: A0A061FJG9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035706 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.7e-36
Identity = 88/139 (63.31%), Postives = 103/139 (74.10%), Query Frame = 1

Query: 34  LQNELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFPASGLSGQATTGQGSRTEHSENH 93
           LQNELDYCGEEP MSPR A  QHQH+QPTM F N++F  S  S   T G G+R +  +  
Sbjct: 79  LQNELDYCGEEPPMSPR-APSQHQHSQPTMHFMNTNFMVSSGSSGQTAGLGTRPDQCDQQ 138

Query: 94  SKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQHQNTDPNSVS 153
            K+ VFSNALSSPVR+SLQ YHI+Q  + PN G+  GNGA RN+E NFLQHQ  D N +S
Sbjct: 139 PKNLVFSNALSSPVRQSLQHYHISQGGYCPNGGLPSGNGA-RNHESNFLQHQTRDSNPLS 198

Query: 154 SNDSSMDMHADSPAHDSHY 173
           SNDSSMDMHADSP+H+S Y
Sbjct: 199 SNDSSMDMHADSPSHESTY 215

BLAST of CSPI07G12550 vs. TrEMBL
Match: A0A0D2QN61_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G258500 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.2e-36
Identity = 92/139 (66.19%), Postives = 105/139 (75.54%), Query Frame = 1

Query: 34  LQNELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFPASGLSGQATTGQGSRTEHSENH 93
           LQNELDY GEEPSMSPR A  Q QH+QP MQF N+ F  S  S   T  QG+R +H +  
Sbjct: 79  LQNELDY-GEEPSMSPR-APSQQQHSQPAMQFMNTGFMVSTGSSGQTAVQGTRPDHCDQQ 138

Query: 94  SKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQHQNTDPNSVS 153
           SK+ VFSNALSSPVRRSLQ YHIAQE + PN G+  GNGA RNNEP+FLQ+Q  D N +S
Sbjct: 139 SKNLVFSNALSSPVRRSLQHYHIAQEGYCPNGGLPSGNGA-RNNEPSFLQNQTRDSNPLS 198

Query: 154 SNDSSMDMHADSPAHDSHY 173
           SNDSSMDMHADSP+H+S Y
Sbjct: 199 SNDSSMDMHADSPSHESTY 214

BLAST of CSPI07G12550 vs. TrEMBL
Match: A0A0B0NSY2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_02753 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-35
Identity = 90/137 (65.69%), Postives = 103/137 (75.18%), Query Frame = 1

Query: 36  NELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFPASGLSGQATTGQGSRTEHSENHSK 95
           NELDY GEEPSMSPR A  Q QH+QP MQF N+ F  S  S   T GQG+R +H +  SK
Sbjct: 130 NELDY-GEEPSMSPR-APSQQQHSQPAMQFMNTGFMVSTGSSGQTAGQGTRPDHCDQQSK 189

Query: 96  SSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQHQNTDPNSVSSN 155
           + VFSNALSSPVRRSLQ YHIAQE + PN G+  GNGA RNNEP+FL +Q  D N +SSN
Sbjct: 190 NLVFSNALSSPVRRSLQHYHIAQEGYCPNGGLPSGNGA-RNNEPSFLPNQTRDSNPLSSN 249

Query: 156 DSSMDMHADSPAHDSHY 173
           DSSMDMHADSP+H+S Y
Sbjct: 250 DSSMDMHADSPSHESTY 263

BLAST of CSPI07G12550 vs. TAIR10
Match: AT4G09830.1 (AT4G09830.1 Uncharacterised conserved protein UCP009193)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-14
Identity = 58/131 (44.27%), Postives = 72/131 (54.96%), Query Frame = 1

Query: 34  LQNELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFPASGLSGQATTGQGSRTEHSENH 93
           +QNEL+ C +EP +SPR         QPTM  TN     +  +   T     R+E  EN 
Sbjct: 79  IQNELECCIDEPPISPRAPP-----PQPTMHVTNPGLMTTSGTSFPTAVPVVRSEQCENQ 138

Query: 94  SKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQHQNTDPNSVS 153
           +K+SVFSNALSSP+RRSLQ Y I      P  G + G G TR++E       N   NS  
Sbjct: 139 AKNSVFSNALSSPIRRSLQNYQI------PQGGYTSG-GTTRSSE------VNRGSNSPG 191

Query: 154 SNDSSMDMHAD 165
           S DSSMDMHA+
Sbjct: 199 SIDSSMDMHAE 191

BLAST of CSPI07G12550 vs. NCBI nr
Match: gi|700189232|gb|KGN44465.1| (hypothetical protein Csa_7G298810 [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 3.1e-76
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1

Query: 25  MSFLNSILTLQNELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFPASGLSGQATTGQG 84
           MSFLNSILTLQNELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFPASGLSGQATTGQG
Sbjct: 1   MSFLNSILTLQNELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFPASGLSGQATTGQG 60

Query: 85  SRTEHSENHSKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQH 144
           SRTEHSENHSKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQH
Sbjct: 61  SRTEHSENHSKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQH 120

Query: 145 QNTDPNSVSSNDSSMDMHADSPAHDSHY 173
           QNTDPNSVSSNDSSMDMHADSPAHDSHY
Sbjct: 121 QNTDPNSVSSNDSSMDMHADSPAHDSHY 148

BLAST of CSPI07G12550 vs. NCBI nr
Match: gi|449443845|ref|XP_004139686.1| (PREDICTED: uncharacterized protein LOC101216474 [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 8.9e-71
Identity = 137/139 (98.56%), Postives = 139/139 (100.00%), Query Frame = 1

Query: 34  LQNELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFPASGLSGQATTGQGSRTEHSENH 93
           ++NELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFPASGLSGQATTGQGSRTEHSENH
Sbjct: 79  IRNELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFPASGLSGQATTGQGSRTEHSENH 138

Query: 94  SKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQHQNTDPNSVS 153
           SKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQHQNTDPNSVS
Sbjct: 139 SKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQHQNTDPNSVS 198

Query: 154 SNDSSMDMHADSPAHDSHY 173
           SNDSSMDMHADSPAHDSHY
Sbjct: 199 SNDSSMDMHADSPAHDSHY 217

BLAST of CSPI07G12550 vs. NCBI nr
Match: gi|659123945|ref|XP_008461917.1| (PREDICTED: uncharacterized protein LOC103500405 [Cucumis melo])

HSP 1 Score: 268.5 bits (685), Expect = 8.3e-69
Identity = 134/139 (96.40%), Postives = 137/139 (98.56%), Query Frame = 1

Query: 34  LQNELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFPASGLSGQATTGQGSRTEHSENH 93
           ++NELDYCGEEPSMSPRPAVHQH HAQPTMQFTNSSFPASGLSGQATTGQGSRTEHSENH
Sbjct: 79  IRNELDYCGEEPSMSPRPAVHQHHHAQPTMQFTNSSFPASGLSGQATTGQGSRTEHSENH 138

Query: 94  SKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQHQNTDPNSVS 153
           SKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNE NFLQHQNT+PNSVS
Sbjct: 139 SKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNESNFLQHQNTEPNSVS 198

Query: 154 SNDSSMDMHADSPAHDSHY 173
           SNDSSMDMHADSPAHDSHY
Sbjct: 199 SNDSSMDMHADSPAHDSHY 217

BLAST of CSPI07G12550 vs. NCBI nr
Match: gi|645263998|ref|XP_008237488.1| (PREDICTED: uncharacterized protein LOC103336223 [Prunus mume])

HSP 1 Score: 169.5 bits (428), Expect = 5.2e-39
Identity = 96/141 (68.09%), Postives = 111/141 (78.72%), Query Frame = 1

Query: 34  LQNELDYCGEE-PSMSPRPAVHQHQHAQPTMQFTNSSFP-ASGLSGQATTGQGSRTEHSE 93
           LQNELDYCGEE PSMSPR  + QHQH QPT+ FTNS FP +SG SG   TGQG R+E  +
Sbjct: 79  LQNELDYCGEEQPSMSPRVPL-QHQHLQPTVHFTNSGFPVSSGSSGPTNTGQGIRSEQCD 138

Query: 94  NHSKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQHQNTDPNS 153
           + SK+SVFSNALSSPVR+SLQ YHI+Q+ +YP +G+  GNGA RNNEP+FL H N D N 
Sbjct: 139 HQSKNSVFSNALSSPVRQSLQHYHISQDGYYPGAGLPSGNGA-RNNEPSFL-HPNRDANP 198

Query: 154 VSSNDSSMDMHADSPAHDSHY 173
            SSND+SMDMHADSP HDS Y
Sbjct: 199 PSSNDTSMDMHADSPGHDSTY 216

BLAST of CSPI07G12550 vs. NCBI nr
Match: gi|694413765|ref|XP_009335132.1| (PREDICTED: uncharacterized protein LOC103927893 [Pyrus x bretschneideri])

HSP 1 Score: 169.1 bits (427), Expect = 6.8e-39
Identity = 94/140 (67.14%), Postives = 109/140 (77.86%), Query Frame = 1

Query: 34  LQNELDYCGEEPSMSPRPAVHQHQHAQPTMQFTNSSFPA-SGLSGQATTGQGSRTEHSEN 93
           LQNELDYCGEEPSMSPR  + QHQH QPT  F+NS FP  SG SG   TGQG R+E  ++
Sbjct: 79  LQNELDYCGEEPSMSPRLPL-QHQHLQPTAHFSNSGFPVTSGSSGPTNTGQGIRSEQCDH 138

Query: 94  HSKSSVFSNALSSPVRRSLQQYHIAQEAHYPNSGMSGGNGATRNNEPNFLQHQNTDPNSV 153
            SK+SVFSNALSSPVR+SLQ YHI+Q+ +YP +G+  GNGA RN+EP+FL H N D N  
Sbjct: 139 QSKNSVFSNALSSPVRQSLQHYHISQDGYYPGAGLPSGNGA-RNSEPSFL-HPNRDANPP 198

Query: 154 SSNDSSMDMHADSPAHDSHY 173
           SSND+SMDMHADSP HDS Y
Sbjct: 199 SSNDTSMDMHADSPGHDSTY 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K448_CUCSA2.2e-76100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298810 PE=4 SV=1[more]
W9RDA2_9ROSA3.1e-3866.67Uncharacterized protein OS=Morus notabilis GN=L484_023790 PE=4 SV=1[more]
A0A061FJG9_THECC1.7e-3663.31Uncharacterized protein OS=Theobroma cacao GN=TCM_035706 PE=4 SV=1[more]
A0A0D2QN61_GOSRA2.2e-3666.19Uncharacterized protein OS=Gossypium raimondii GN=B456_009G258500 PE=4 SV=1[more]
A0A0B0NSY2_GOSAR1.1e-3565.69Uncharacterized protein OS=Gossypium arboreum GN=F383_02753 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G09830.11.6e-1444.27 Uncharacterised conserved protein UCP009193[more]
Match NameE-valueIdentityDescription
gi|700189232|gb|KGN44465.1|3.1e-76100.00hypothetical protein Csa_7G298810 [Cucumis sativus][more]
gi|449443845|ref|XP_004139686.1|8.9e-7198.56PREDICTED: uncharacterized protein LOC101216474 [Cucumis sativus][more]
gi|659123945|ref|XP_008461917.1|8.3e-6996.40PREDICTED: uncharacterized protein LOC103500405 [Cucumis melo][more]
gi|645263998|ref|XP_008237488.1|5.2e-3968.09PREDICTED: uncharacterized protein LOC103336223 [Prunus mume][more]
gi|694413765|ref|XP_009335132.1|6.8e-3967.14PREDICTED: uncharacterized protein LOC103927893 [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G12550.1CSPI07G12550.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33675FAMILY NOT NAMEDcoord: 34..172
score: 1.4
NoneNo IPR availablePANTHERPTHR33675:SF1SUBFAMILY NOT NAMEDcoord: 34..172
score: 1.4