CSPI07G12230 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G12230
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTransposon Ty3-I Gag-Pol polyprotein
LocationChr7 : 10491882 .. 10492208 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTAGAGAGAAGTGAATCATTAGAAGAAGTAGAATCATGGGAGGAAGAATTAATAGTAGAAGAATCAGTAACTGTGATACTAAAAAGTTTTAAAGATGTCTTCGAGTGGCCCGAAACATTTCCTTCTGGAAGAGCAATTGAACACCATATTCACCTTAAAAAAGGAATGGATCTGGTGAATGTGAGACCATATCGTTATGCAAACCAACAGAAAACGGAAATGAAAAAGTTGGTAGAGGAAATGTTGTCATCAGGGGTAATCCGACCAAGTACAAGTCCTTATTCAAGCCATGTGTTGTTGGTAAGGAAGAAAGATGGAAGC

mRNA sequence

ATGGCCTTAGAGAGAAGTGAATCATTAGAAGAAGTAGAATCATGGGAGGAAGAATTAATAGTAGAAGAATCAGTAACTGTGATACTAAAAAGTTTTAAAGATGTCTTCGAGTGGCCCGAAACATTTCCTTCTGGAAGAGCAATTGAACACCATATTCACCTTAAAAAAGGAATGGATCTGGTGAATGTGAGACCATATCGTTATGCAAACCAACAGAAAACGGAAATGAAAAAGTTGGTAGAGGAAATGTTGTCATCAGGGGTAATCCGACCAAGTACAAGTCCTTATTCAAGCCATGTGTTGTTGGTAAGGAAGAAAGATGGAAGC

Coding sequence (CDS)

ATGGCCTTAGAGAGAAGTGAATCATTAGAAGAAGTAGAATCATGGGAGGAAGAATTAATAGTAGAAGAATCAGTAACTGTGATACTAAAAAGTTTTAAAGATGTCTTCGAGTGGCCCGAAACATTTCCTTCTGGAAGAGCAATTGAACACCATATTCACCTTAAAAAAGGAATGGATCTGGTGAATGTGAGACCATATCGTTATGCAAACCAACAGAAAACGGAAATGAAAAAGTTGGTAGAGGAAATGTTGTCATCAGGGGTAATCCGACCAAGTACAAGTCCTTATTCAAGCCATGTGTTGTTGGTAAGGAAGAAAGATGGAAGC
Homology
[Close]
BLAST of CSPI07G12230 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-06
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 48  IEHHIHLKKGMDLVNVRPYRYANQQKTEMKKLVEEMLSSGVIRPSTSPYSSHVLLVRKKD 107
           ++H I +K G  L  ++PY    + + E+ K+V+++L +  I PS SP SS V+LV KKD
Sbjct: 584 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 643

Query: 108 GS 110
           G+
Sbjct: 644 GT 645

[Close]
BLAST of CSPI07G12230 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-06
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 48  IEHHIHLKKGMDLVNVRPYRYANQQKTEMKKLVEEMLSSGVIRPSTSPYSSHVLLVRKKD 107
           ++H I +K G  L  ++PY    + + E+ K+V+++L +  I PS SP SS V+LV KKD
Sbjct: 610 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 669

Query: 108 GS 110
           G+
Sbjct: 670 GT 671

[Close]
BLAST of CSPI07G12230 vs. TrEMBL
Match: A5BZW2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040537 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.9e-19
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 1 

Query: 21  VEESVTVILKSFKDVFEWPETFPSGRAIEHHIHLKKGMDLVNVRPYRYANQQKTEMKKLV 80
           V++ +  ++++F D+F+ P   P  R IEH I LK+G D +NVRPYRYA  QK E+++ V
Sbjct: 420 VQQELKELIEAFDDIFQAPSQLPPQRDIEHQITLKEGTDPINVRPYRYAYFQKDEIERQV 479

Query: 81  EEMLSSGVIRPSTSPYSSHVLLVRKKDGS 110
            +ML+SG+IRPS+SP+SS VLLV+KKDGS
Sbjct: 480 SDMLNSGLIRPSSSPFSSPVLLVKKKDGS 508

[Close]
BLAST of CSPI07G12230 vs. TrEMBL
Match: A0A151R7E6_CAJCA (Retrotransposable element Tf2 (Fragment) OS=Cajanus cajan GN=KK1_040325 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.9e-19
Identity = 47/94 (50.00%), Postives = 69/94 (73.40%), Query Frame = 1 

Query: 16  EEELIVEESVTVILKSFKDVFEWPETFPSGRAIEHHIHLKKGMDLVNVRPYRYANQQKTE 75
           E+   + ES+  IL+ FK+VF  P+  P  R  +H I+LK+G ++ N+RPYRY   QK E
Sbjct: 241 EKMRAIPESIKQILEEFKEVFREPQGLPPSRGQDHAINLKEGAEIPNLRPYRYPYYQKNE 300

Query: 76  MKKLVEEMLSSGVIRPSTSPYSSHVLLVRKKDGS 110
           ++KLV++ML +G+IRPS SPY+S ++LV+KKDGS
Sbjct: 301 IEKLVQDMLRTGIIRPSISPYASSIILVKKKDGS 334

[Close]
BLAST of CSPI07G12230 vs. TrEMBL
Match: A0A151QTT8_CAJCA (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cajanus cajan GN=KK1_045445 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-18
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 1 

Query: 22  EESVTVILKSFKDVFEWPETFPSGRAIEHHIHLKKGMDLVNVRPYRYANQQKTEMKKLVE 81
           EE +  IL+ F  VF  P+T P  R  +H I +K G+D +NVRPYRY   QK E++K V+
Sbjct: 22  EEQLQQILREFHVVFSIPQTLPPHRDADHKISIKAGVDPINVRPYRYPYLQKNEIEKQVD 81

Query: 82  EMLSSGVIRPSTSPYSSHVLLVRKKDGS 110
           EML+ G+IRPS SPYSS V+LV+KKDGS
Sbjct: 82  EMLTVGLIRPSNSPYSSPVILVKKKDGS 109

[Close]
BLAST of CSPI07G12230 vs. TrEMBL
Match: A5AJJ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043900 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-18
Identity = 47/89 (52.81%), Postives = 67/89 (75.28%), Query Frame = 1 

Query: 21  VEESVTVILKSFKDVFEWPETFPSGRAIEHHIHLKKGMDLVNVRPYRYANQQKTEMKKLV 80
           V++ +  ++++F D+F+ P   P  R IEH I LK+G D +NVRPYRYA  QK E+++ V
Sbjct: 408 VQQELKELIEAFDDIFQAPSQLPPQRDIEHQITLKEGTDPINVRPYRYAYFQKDEIERQV 467

Query: 81  EEMLSSGVIRPSTSPYSSHVLLVRKKDGS 110
            +ML+SG+IRPS+SP+SS VLL +KKDGS
Sbjct: 468 SDMLNSGLIRPSSSPFSSPVLLEKKKDGS 496

[Close]
BLAST of CSPI07G12230 vs. TrEMBL
Match: A0A151SHK9_CAJCA (Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_000426 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-18
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 1 

Query: 22  EESVTVILKSFKDVFEWPETFPSGRAIEHHIHLKKGMDLVNVRPYRYANQQKTEMKKLVE 81
           EE +  IL+ F  VF  P+T P  R  +H I +K G+D +NVRPYRY   QK E++K V+
Sbjct: 161 EEQLQQILREFHVVFSIPQTLPPHRDADHKISIKAGVDPINVRPYRYPYLQKNEIEKQVD 220

Query: 82  EMLSSGVIRPSTSPYSSHVLLVRKKDGS 110
           EML+ G+IRPS SPYSS V+LV+KKDGS
Sbjct: 221 EMLTVGLIRPSNSPYSSPVILVKKKDGS 248

[Close]
BLAST of CSPI07G12230 vs. NCBI nr
Match: gi|659115474|ref|XP_008457576.1| (PREDICTED: uncharacterized protein LOC103497241 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-22
Identity = 57/87 (65.52%), Postives = 69/87 (79.31%), Query Frame = 1 

Query: 23  ESVTVILKSFKDVFEWPETFPSGRAIEHHIHLKKGMDLVNVRPYRYANQQKTEMKKLVEE 82
           E V VIL    DVFEWPET PS + I+HHIHLK+G +LVNVR Y YA+QQK ++++L +E
Sbjct: 134 EGVGVIL----DVFEWPETLPSKKGIKHHIHLKQGTNLVNVRSYHYAHQQKEKIERLADE 193

Query: 83  MLSSGVIRPSTSPYSSHVLLVRKKDGS 110
           ML+S +IRPSTSP SS VLL RKKDGS
Sbjct: 194 MLASRIIRPSTSPNSSPVLLARKKDGS 216

[Close]
BLAST of CSPI07G12230 vs. NCBI nr
Match: gi|1012257886|ref|XP_015945324.1| (PREDICTED: uncharacterized protein LOC107470435 [Arachis duranensis])

HSP 1 Score: 108.6 bits (270), Expect = 6.9e-21
Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = 1 

Query: 22  EESVTVILKSFKDVFEWPETFPSGRAIEHHIHLKKGMDLVNVRPYRYANQQKTEMKKLVE 81
           +E+V ++L  +++VF+ PET P  R IEH IHL+ G D VNVRPYRY + QK E+++LVE
Sbjct: 547 DEAVQLLLSEYQEVFKEPETLPPPREIEHQIHLQPGADPVNVRPYRYPHYQKEEIERLVE 606

Query: 82  EMLSSGVIRPSTSPYSSHVLLVRKKDGS 110
           EML SGVIR S S +SS VLLVRKKDGS
Sbjct: 607 EMLQSGVIRESHSAFSSPVLLVRKKDGS 634

[Close]
BLAST of CSPI07G12230 vs. NCBI nr
Match: gi|922465627|ref|XP_013633310.1| (PREDICTED: uncharacterized protein LOC106339017 [Brassica oleracea var. oleracea])

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-19
Identity = 50/89 (56.18%), Postives = 68/89 (76.40%), Query Frame = 1 

Query: 21  VEESVTVILKSFKDVFEWPETFPSGRAIEHHIHLKKGMDLVNVRPYRYANQQKTEMKKLV 80
           + ES++++L+ +  +F+ P T P  R IEHHI LK+G D VNVRPYRYA+ QK E++K V
Sbjct: 530 IPESMSMLLQQYTGIFDTPTTLPPERDIEHHITLKEGSDPVNVRPYRYAHFQKEEIEKQV 589

Query: 81  EEMLSSGVIRPSTSPYSSHVLLVRKKDGS 110
            E L +G+IR S+SP+SS VLLV+KKDGS
Sbjct: 590 NETLKTGLIRNSSSPFSSPVLLVKKKDGS 618

[Close]
BLAST of CSPI07G12230 vs. NCBI nr
Match: gi|147816473|emb|CAN64046.1| (hypothetical protein VITISV_040537 [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 8.5e-19
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 1 

Query: 21  VEESVTVILKSFKDVFEWPETFPSGRAIEHHIHLKKGMDLVNVRPYRYANQQKTEMKKLV 80
           V++ +  ++++F D+F+ P   P  R IEH I LK+G D +NVRPYRYA  QK E+++ V
Sbjct: 420 VQQELKELIEAFDDIFQAPSQLPPQRDIEHQITLKEGTDPINVRPYRYAYFQKDEIERQV 479

Query: 81  EEMLSSGVIRPSTSPYSSHVLLVRKKDGS 110
            +ML+SG+IRPS+SP+SS VLLV+KKDGS
Sbjct: 480 SDMLNSGLIRPSSSPFSSPVLLVKKKDGS 508

[Close]
BLAST of CSPI07G12230 vs. NCBI nr
Match: gi|731410617|ref|XP_010657629.1| (PREDICTED: uncharacterized protein LOC104880969 [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 8.5e-19
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 1 

Query: 21  VEESVTVILKSFKDVFEWPETFPSGRAIEHHIHLKKGMDLVNVRPYRYANQQKTEMKKLV 80
           V++ +  ++++F D+F+ P   P  R IEH I LK+G D +NVRPYRYA  QK E+++ V
Sbjct: 440 VQQELKELIEAFDDIFQAPSQLPPQRDIEHQITLKEGTDPINVRPYRYAYFQKDEIERQV 499

Query: 81  EEMLSSGVIRPSTSPYSSHVLLVRKKDGS 110
            +ML+SG+IRPS+SP+SS VLLV+KKDGS
Sbjct: 500 SDMLNSGLIRPSSSPFSSPVLLVKKKDGS 528

The following BLAST results are available for this feature:
BLAST of CSPI07G12230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YG31B_YEAST2.2e-0640.32Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
YI31B_YEAST2.2e-0640.32Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
BLAST of CSPI07G12230 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BZW2_VITVI5.9e-1953.93Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040537 PE=4 SV=1[more]
A0A151R7E6_CAJCA5.9e-1950.00Retrotransposable element Tf2 (Fragment) OS=Cajanus cajan GN=KK1_040325 PE=4 SV=... [more]
A0A151QTT8_CAJCA2.9e-1855.68Retrovirus-related Pol polyprotein from transposon 297 family OS=Cajanus cajan G... [more]
A5AJJ1_VITVI2.9e-1852.81Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043900 PE=4 SV=1[more]
A0A151SHK9_CAJCA2.9e-1855.68Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_000426 PE=4 SV=1[more]
BLAST of CSPI07G12230 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G12230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115474|ref|XP_008457576.1|2.2e-2265.52PREDICTED: uncharacterized protein LOC103497241 [Cucumis melo][more]
gi|1012257886|ref|XP_015945324.1|6.9e-2161.36PREDICTED: uncharacterized protein LOC107470435 [Arachis duranensis][more]
gi|922465627|ref|XP_013633310.1|2.9e-1956.18PREDICTED: uncharacterized protein LOC106339017 [Brassica oleracea var. oleracea... [more]
gi|147816473|emb|CAN64046.1|8.5e-1953.93hypothetical protein VITISV_040537 [Vitis vinifera][more]
gi|731410617|ref|XP_010657629.1|8.5e-1953.93PREDICTED: uncharacterized protein LOC104880969 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0034641 cellular nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0043229 intracellular organelle
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G12230.1CSPI07G12230.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.10.10coord: 54..107
score: 8.9
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 29..108
score: 5.11