CSPI07G12030 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G12030
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Nuclear pore complex protein Nup155
Location	Chr7 : 10273041 .. 10273903 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGTCTGGGAAATTTCAAGGCTAAATTATACAACCCACCCCAGGGAGGTAATTGTTGTTGGTTTATGATGGGTTTTGAAAATTTGAATTGAAGTTTGAGGTTTATGATTTTTGGTAGTACTCTTTTTTTTTTTTTTCAATTGGCAACATGTTATCTTCTCGTTTTTTTTTTTGTTTTCCACCAAAACAAGTTTTAGACTTATTCTTGTTTATCTTTTATGGAAGTCTTTAGCAAGTTCTACATGACATTGGCTTTATATTGATTAAAAAATTTGCAAATGTTGATATTTGGTTTGTATTATAGTGTTTTTGAGGTATATTTTTGTTTAGTGTTACAGTCTACAAATTTTCGTTGTTATTATATAATTTTTGATACTTTCAAGAACTATTAACCATTGCATCATCTAAAAGCAGTCTAGTCATTTTGTACACTGTCAAATGTTTGGTTTGGCAATGTACAACCTTGCGTACTTGTTTGAATTGAGAAATTGCATTAATTTCATGCTATTATGTTCATTACTTCTTTTATAGTGGCCTCCTATAGTGGAAGTGGTGGATACTTGGGAGTTACCTCCAGTGCTCGTAGAAAGATATAATGCTGCTGGTGGGGAAGGAACTGCCTTATGTGGAATACTTCCAGAAATACGAATAGCTTGGGCATCTGTTGACAATTCTTTATTTCTTTGGTGATTTGACAAGCGGTGAGTATAATTTGGCCATGTTAGATAATTTCATTATTAATGTGTATTTTGAAATCTAATTGTGATCCACAATATTGTTTGTTGCACCAAGATATCTTGTCAAATTGAACATTCAACGCATTTGTAATTGTGATGATTTTGGAATTAATGTTTGGTCAA

mRNA sequence

ATGCATGTCTGGGAAATTTCAAGGCTAAATTATACAACCCACCCCAGGGAGTGGCCTCCTATAGTGGAAGTGGTGGATACTTGGGAGTTACCTCCAGTGCTCGTAGAAAGATATAATGCTGCTGGTGGGGAAGGAACTGCCTTATGTGGAATACTTCCAGAAATACGAATAGCTTGGGCATCTGTTGACAATTCTTTATTTCTTTGGTGA

Coding sequence (CDS)

ATGCATGTCTGGGAAATTTCAAGGCTAAATTATACAACCCACCCCAGGGAGTGGCCTCCTATAGTGGAAGTGGTGGATACTTGGGAGTTACCTCCAGTGCTCGTAGAAAGATATAATGCTGCTGGTGGGGAAGGAACTGCCTTATGTGGAATACTTCCAGAAATACGAATAGCTTGGGCATCTGTTGACAATTCTTTATTTCTTTGGTGA

Homology

[Close]

BLAST of CSPI07G12030 vs. Swiss-Prot
Match: NU155_ARATH (Nuclear pore complex protein NUP155 OS=Arabidopsis thaliana GN=NUP155 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 7.8e-26
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 1


Query: 11  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW 70
           Y+THPREWPP++EV +TWELP VL+ERYN AGGEGTALCGI PEIR AWASVDNSLFLW
Sbjct: 47  YSTHPREWPPLIEVGETWELPSVLIERYNTAGGEGTALCGIFPEIRRAWASVDNSLFLW 105

[Close]

BLAST of CSPI07G12030 vs. TrEMBL
Match: A0A0A0K661_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G280350 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 9.3e-34
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MHVWEISRLNYTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWA 60
          MHVWEISRLNYTTHPREWPP+VEVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWA
Sbjct: 1  MHVWEISRLNYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWA 60

Query: 61 SVDNSLFLW 70
          SVDNSLFLW
Sbjct: 61 SVDNSLFLW 69

[Close]

BLAST of CSPI07G12030 vs. TrEMBL
Match: A0A0A0KJ04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G082300 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.9e-27
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 11  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW 70
           YTTHPREWPP+VEVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Sbjct: 47  YTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWASVDNSLFLW 105

[Close]

BLAST of CSPI07G12030 vs. TrEMBL
Match: A0A061E9P5_THECC (Nucleoporin 155 OS=Theobroma cacao GN=TCM_011050 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-26
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 11  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW 70
           Y+THPREWPP++EVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Sbjct: 47  YSTHPREWPPLIEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWASVDNSLFLW 105

[Close]

BLAST of CSPI07G12030 vs. TrEMBL
Match: A0A022QRB7_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a000179mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.2e-26
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 11  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW 70
           YT+HPREWPP+VEVVDTWELPPVL+ERYN+AGGEGTALCGI PEIR AWASVDNSLFLW
Sbjct: 48  YTSHPREWPPLVEVVDTWELPPVLIERYNSAGGEGTALCGIFPEIRRAWASVDNSLFLW 106

[Close]

BLAST of CSPI07G12030 vs. TrEMBL
Match: F6HFD8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05730 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.2e-26
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 11  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW 70
           Y+THPREWPP+VEV+DTWELPPVL+ERYNAAGGEGTALCG+ PEIR AWASVDNSLFLW
Sbjct: 47  YSTHPREWPPLVEVMDTWELPPVLIERYNAAGGEGTALCGVFPEIRRAWASVDNSLFLW 105

[Close]

BLAST of CSPI07G12030 vs. TAIR10
Match: AT1G14850.1 (AT1G14850.1 nucleoporin 155)

HSP 1 Score: 117.1 bits (292), Expect = 4.4e-27
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 1


Query: 11  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW 70
           Y+THPREWPP++EV +TWELP VL+ERYN AGGEGTALCGI PEIR AWASVDNSLFLW
Sbjct: 47  YSTHPREWPPLIEVGETWELPSVLIERYNTAGGEGTALCGIFPEIRRAWASVDNSLFLW 105

[Close]

BLAST of CSPI07G12030 vs. NCBI nr
Match: gi|700189171|gb|KGN44404.1| (hypothetical protein Csa_7G280350 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-33
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MHVWEISRLNYTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWA 60
          MHVWEISRLNYTTHPREWPP+VEVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWA
Sbjct: 1  MHVWEISRLNYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWA 60

Query: 61 SVDNSLFLW 70
          SVDNSLFLW
Sbjct: 61 SVDNSLFLW 69

[Close]

BLAST of CSPI07G12030 vs. NCBI nr
Match: gi|778698347|ref|XP_011654516.1| (PREDICTED: nuclear pore complex protein NUP155 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 7.1e-27
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 11  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW 70
           YTTHPREWPP+VEVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Sbjct: 47  YTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWASVDNSLFLW 105

[Close]

BLAST of CSPI07G12030 vs. NCBI nr
Match: gi|659129532|ref|XP_008464720.1| (PREDICTED: nuclear pore complex protein Nup155 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 7.1e-27
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 11  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW 70
           YTTHPREWPP+VEVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Sbjct: 47  YTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWASVDNSLFLW 105

[Close]

BLAST of CSPI07G12030 vs. NCBI nr
Match: gi|700194538|gb|KGN49715.1| (hypothetical protein Csa_5G082300 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 7.1e-27
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 11  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW 70
           YTTHPREWPP+VEVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Sbjct: 47  YTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWASVDNSLFLW 105

[Close]

BLAST of CSPI07G12030 vs. NCBI nr
Match: gi|747049075|ref|XP_011070569.1| (PREDICTED: LOW QUALITY PROTEIN: nuclear pore complex protein NUP155 [Sesamum indicum])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 11  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW 70
           Y+THPREWPP+VEVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Sbjct: 48  YSTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWASVDNSLFLW 106

The following BLAST results are available for this feature:

BLAST of CSPI07G12030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NU155_ARATH	7.8e-26	83.05	Nuclear pore complex protein NUP155 OS=Arabidopsis thaliana GN=NUP155 PE=1 SV=1	[more]

BLAST of CSPI07G12030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K661_CUCSA	9.3e-34	94.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G280350 PE=4 SV=1	[more]
A0A0A0KJ04_CUCSA	4.9e-27	93.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G082300 PE=4 SV=1	[more]
A0A061E9P5_THECC	1.9e-26	89.83	Nucleoporin 155 OS=Theobroma cacao GN=TCM_011050 PE=4 SV=1	[more]
A0A022QRB7_ERYGU	3.2e-26	89.83	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a000179mg PE=4 SV=1	[more]
F6HFD8_VITVI	4.2e-26	88.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05730 PE=4 SV=...	[more]

BLAST of CSPI07G12030 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14850.1	4.4e-27	83.05	nucleoporin 155	[more]

BLAST of CSPI07G12030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189171\|gb\|KGN44404.1\|	1.3e-33	94.20	hypothetical protein Csa_7G280350 [Cucumis sativus]	[more]
gi\|778698347\|ref\|XP_011654516.1\|	7.1e-27	93.22	PREDICTED: nuclear pore complex protein NUP155 [Cucumis sativus]	[more]
gi\|659129532\|ref\|XP_008464720.1\|	7.1e-27	93.22	PREDICTED: nuclear pore complex protein Nup155 [Cucumis melo]	[more]
gi\|700194538\|gb\|KGN49715.1\|	7.1e-27	93.22	hypothetical protein Csa_5G082300 [Cucumis sativus]	[more]
gi\|747049075\|ref\|XP_011070569.1\|	2.1e-26	91.53	PREDICTED: LOW QUALITY PROTEIN: nuclear pore complex protein NUP155 [Sesamum ind...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004870	Nucleoporin_Nup155
IPR014908	Nucleoporin_Nup133/Nup155_N

Vocabulary: **Cellular Component**
Term	Definition
GO:0005643	nuclear pore

Vocabulary: **Biological Process**
Term	Definition
GO:0006913	nucleocytoplasmic transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0017056	structural constituent of nuclear pore

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0001510	RNA methylation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005643	nuclear pore
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0005487	nucleocytoplasmic transporter activity
molecular_function	GO:0017056	structural constituent of nuclear pore

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G12030.1	CSPI07G12030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004870	Nucleoporin, Nup155-like	PANTHER	PTHR10350	NUCLEAR PORE COMPLEX PROTEIN NUP155	coord: 6..69 score: 1.5
IPR014908	Nucleoporin, Nup133/Nup155-like, N-terminal	PFAM	PF08801	Nucleoporin_N	coord: 18..69 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G12030	Csa7G280350	Cucumber (Chinese Long) v2	cpicuB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G12030	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G12030	Bottle gourd (USVL1VR-Ls)	cpilsiB528
CSPI07G12030	Melon (DHL92) v3.6.1	cpimedB534
CSPI07G12030	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G12030	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G12030	Wax gourd	cpiwgoB718
CSPI07G12030	Cucumber (Gy14) v1	cgycpiB364
CSPI07G12030	Cucurbita maxima (Rimu)	cmacpiB039
CSPI07G12030	Cucurbita moschata (Rifu)	cmocpiB029
CSPI07G12030	Melon (DHL92) v3.5.1	cpimeB548
CSPI07G12030	Watermelon (97103) v1	cpiwmB582