CSPI07G11410 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G11410
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr7 : 9623629 .. 9624174 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTTCTTTATGGATCTCAAGATCTTTGGGATATTGTTGACATCGGATATTCAGAGCCAGAAAGTGAGAATGGTCTTTCAGCACAACAACTCAATGAGTTGAGAGATGCTAGAAAAAAGGATAAGAAGGCATTATTTTTCATCTACCAATCTGTGGATGAAAATATTTTTGAAAGAATATCAGGAGTCTCTACTGCTAAAGCAGCATGGGATGCATTGCAAAATTTGTATGAAGGAGAAGAAAAGGTAAAATTGGTCCGATTACAAACACTTCGAGCTGAATTTGATACAATTCGAAGATTCTTAGAACCATGACTAGAAGATATGAGCATATTGTTGTAGCAATTGAAGAATCCAAAGATTTGTCAACTCTCTCTATAAATAGCTTAATGGGATCTCTTCAATCTCATGAGCTCAGATTGAAGATGTTTGATTCTAATCCTTCAGAAGAAGCTTTTCATATGCAGTCCTCCTATAGAGGTCGATCCAATGGAAGAAGAGGTGGACGTGGTGGTAGAGGCAATGGACGATCCAACGTTGTAA

mRNA sequence

ATGAAGGTTCTTTATGGATCTCAAGATCTTTGGGATATTGTTGACATCGGATATTCAGAGCCAGAAAGTGAGAATGGTCTTTCAGCACAACAACTCAATGAGTTGAGAGATGCTAGAAAAAAGGATAAGAAGGCATTATTTTTCATCTACCAATCTGTGGATGAAAATATTTTTGAAAGAATATCAGGAGTCTCTACTGCTAAAGCAGCATGGGATGCATTGCAAAATTTGTATGAAGGAGAAGAAAAGAAGAAGCTTTTCATATGCAGTCCTCCTATAGAGGTCGATCCAATGGAAGAAGAGGTGGACGTGGTGGTAGAGGCAATGGACGATCCAACGTTGTAA

Coding sequence (CDS)

ATGAAGGTTCTTTATGGATCTCAAGATCTTTGGGATATTGTTGACATCGGATATTCAGAGCCAGAAAGTGAGAATGGTCTTTCAGCACAACAACTCAATGAGTTGAGAGATGCTAGAAAAAAGGATAAGAAGGCATTATTTTTCATCTACCAATCTGTGGATGAAAATATTTTTGAAAGAATATCAGGAGTCTCTACTGCTAAAGCAGCATGGGATGCATTGCAAAATTTGTATGAAGGAGAAGAAAAGAAGAAGCTTTTCATATGCAGTCCTCCTATAGAGGTCGATCCAATGGAAGAAGAGGTGGACGTGGTGGTAGAGGCAATGGACGATCCAACGTTGTAA

Homology

[Close]

BLAST of CSPI07G11410 vs. TrEMBL
Match: A6YTD9_CUCME (Integrase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.1e-23
Identity = 59/105 (56.19%), Postives = 78/105 (74.29%), Query Frame = 1


Query: 1   MKVLYGSQDLWDIVDIGYSEPESENGLSAQQLNELRDARKKDKKALFFIYQSVDENIFER 60
           MKVLYGSQ+LWDIV+ GY+E E+++ L+ QQL ELR+ R KDKKALFFIYQ+VDE I ER
Sbjct: 27  MKVLYGSQELWDIVERGYTEVENQSELTNQQLVELRENRNKDKKALFFIYQAVDEFISER 86

Query: 61  ISGVSTAKAAWDALQNLYEGEEKKKLFICSPPIEVDPMEEEVDVV 106
           IS  ++AKAAWD L++ Y+GE+K K+      I +  +  E D +
Sbjct: 87  ISTATSAKAAWDILRSTYQGEDKVKM------IRLQALRSEFDCI 125

[Close]

BLAST of CSPI07G11410 vs. TrEMBL
Match: A0A0D3DHC7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.4e-17
Identity = 42/85 (49.41%), Postives = 63/85 (74.12%), Query Frame = 1


Query: 1   MKVLYGSQDLWDIVDIGYSEPESENGLSAQQLNELRDARKKDKKALFFIYQSVDENIFER 60
           M  + G+ D+W+IV+ G++EPE++ GLS  Q + LRD+RK+DKKAL  IYQ +DE+ FE+
Sbjct: 25  MMAILGAHDVWEIVEKGFNEPENDCGLSQTQKDGLRDSRKRDKKALCLIYQGLDEDTFEK 84

Query: 61  ISGVSTAKAAWDALQNLYEGEEKKK 86
           ++G  T+K AW+ LQ  Y+G E+ K
Sbjct: 85  VAGARTSKEAWEKLQTSYKGAEQVK 109

[Close]

BLAST of CSPI07G11410 vs. TrEMBL
Match: A0A151TGP0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_012507 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.9e-17
Identity = 43/85 (50.59%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 1  MKVLYGSQDLWDIVDIGYSEPESENGLSAQQLNELRDARKKDKKALFFIYQSVDENIFER 60
          M  L G+ D+W++V+ G++EPE+   LS  Q + LRD+RK+DKKAL  IYQ +DE+ FE+
Sbjct: 14 MVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKALCLIYQGLDEDTFEK 73

Query: 61 ISGVSTAKAAWDALQNLYEGEEKKK 86
          ISGV TAK AW+ L+  Y+G ++ K
Sbjct: 74 ISGVKTAKEAWEKLKISYKGADQVK 98

[Close]

BLAST of CSPI07G11410 vs. TrEMBL
Match: A0A151R357_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_041812 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.9e-17
Identity = 43/85 (50.59%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 1   MKVLYGSQDLWDIVDIGYSEPESENGLSAQQLNELRDARKKDKKALFFIYQSVDENIFER 60
           M  L G+ D+W++V+ G++EPE+   LS  Q + LRD+RK+DKKAL  IYQ +DE+ FE+
Sbjct: 25  MVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKALCLIYQGLDEDTFEK 84

Query: 61  ISGVSTAKAAWDALQNLYEGEEKKK 86
           ISGV TAK AW+ L+  Y+G ++ K
Sbjct: 85  ISGVKTAKEAWEKLKISYKGADQVK 109

[Close]

BLAST of CSPI07G11410 vs. TrEMBL
Match: A0A151QP37_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_047341 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.9e-17
Identity = 43/85 (50.59%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 1   MKVLYGSQDLWDIVDIGYSEPESENGLSAQQLNELRDARKKDKKALFFIYQSVDENIFER 60
           M  L G+ D+W++V+ G++EPE+   LS  Q + LRD+RK+DKKAL  IYQ +DE+ FE+
Sbjct: 25  MVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKALCLIYQGLDEDTFEK 84

Query: 61  ISGVSTAKAAWDALQNLYEGEEKKK 86
           ISGV TAK AW+ L+  Y+G ++ K
Sbjct: 85  ISGVKTAKEAWEKLKISYKGADQVK 109

[Close]

BLAST of CSPI07G11410 vs. TAIR10
Match: AT1G48720.1 (AT1G48720.1 unknown protein)

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-14
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 1  MKVLYGSQDLWDIVDIGYSEPESENGLSAQQLNELRDARKKDKKALFFIYQSVDENIFER 60
          MK + G+ D+W+IV+ G+ EPE+E  LS  Q + LRD+RK+DKKAL  IYQ +DE+ FE+
Sbjct: 25 MKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQGLDEDTFEK 84

Query: 61 ISGVSTAK 69
          +   ++AK
Sbjct: 85 VVEATSAK 92

[Close]

BLAST of CSPI07G11410 vs. NCBI nr
Match: gi|659109769|ref|XP_008454868.1| (PREDICTED: uncharacterized protein LOC103495177 [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 59/105 (56.19%), Postives = 79/105 (75.24%), Query Frame = 1


Query: 1   MKVLYGSQDLWDIVDIGYSEPESENGLSAQQLNELRDARKKDKKALFFIYQSVDENIFER 60
           MKVLYGSQ+LWDI++ GY+E E+++ L+ QQL ELR+ RKKDKKALFFIYQ+VDE IFER
Sbjct: 27  MKVLYGSQELWDIIERGYTEVENQSELTNQQLVELRENRKKDKKALFFIYQAVDEFIFER 86

Query: 61  ISGVSTAKAAWDALQNLYEGEEKKKLFICSPPIEVDPMEEEVDVV 106
            S  ++AKAAWD L++ Y+GE+K K+      I +  +  E D +
Sbjct: 87  TSTATSAKAAWDILRSTYQGEDKAKM------IRLQALRSEFDCI 125

[Close]

BLAST of CSPI07G11410 vs. NCBI nr
Match: gi|659099180|ref|XP_008450471.1| (PREDICTED: uncharacterized protein LOC103492064 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 2.7e-23
Identity = 62/109 (56.88%), Postives = 79/109 (72.48%), Query Frame = 1


Query: 1   MKVLYGSQDLWDIVDIGYSEPESENGLSAQQLNELRDARKKDKKALFFIYQSVDENIFER 60
           MKVLY SQ+LWDIV+ GY+E E+++ L+ QQL ELR+  KKDKKALFFIYQ VDE IFER
Sbjct: 27  MKVLYDSQELWDIVERGYTEVENQSELTNQQLVELRENCKKDKKALFFIYQVVDEFIFER 86

Query: 61  ISGVSTAKAAWDALQNLYEGEEKKKL---------FICSPPIEVDPMEE 101
           IS  ++AKAAWD L++ Y+GE+K K+         F C    E +P+EE
Sbjct: 87  ISTATSAKAAWDILRSTYQGEDKVKMIRLQALRSEFDCIKMKETEPIEE 135

[Close]

BLAST of CSPI07G11410 vs. NCBI nr
Match: gi|150036244|gb|ABR67407.1| (integrase [Cucumis melo subsp. melo])

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-22
Identity = 59/105 (56.19%), Postives = 78/105 (74.29%), Query Frame = 1


Query: 1   MKVLYGSQDLWDIVDIGYSEPESENGLSAQQLNELRDARKKDKKALFFIYQSVDENIFER 60
           MKVLYGSQ+LWDIV+ GY+E E+++ L+ QQL ELR+ R KDKKALFFIYQ+VDE I ER
Sbjct: 27  MKVLYGSQELWDIVERGYTEVENQSELTNQQLVELRENRNKDKKALFFIYQAVDEFISER 86

Query: 61  ISGVSTAKAAWDALQNLYEGEEKKKLFICSPPIEVDPMEEEVDVV 106
           IS  ++AKAAWD L++ Y+GE+K K+      I +  +  E D +
Sbjct: 87  ISTATSAKAAWDILRSTYQGEDKVKM------IRLQALRSEFDCI 125

[Close]

BLAST of CSPI07G11410 vs. NCBI nr
Match: gi|659119553|ref|XP_008459718.1| (PREDICTED: uncharacterized protein LOC103498760 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-22
Identity = 59/105 (56.19%), Postives = 78/105 (74.29%), Query Frame = 1


Query: 1   MKVLYGSQDLWDIVDIGYSEPESENGLSAQQLNELRDARKKDKKALFFIYQSVDENIFER 60
           MKVLYGSQ+LWDIV+ GY + E+++ L+ QQL ELR+ RKKD+KALFFIYQ VDE IFER
Sbjct: 27  MKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFER 86

Query: 61  ISGVSTAKAAWDALQNLYEGEEKKKLFICSPPIEVDPMEEEVDVV 106
           IS  ++AKAAWD L++ Y+GE+K K+      I +  +  E D +
Sbjct: 87  ISTATSAKAAWDILRSTYQGEDKIKM------IRLQALRSEFDCI 125

[Close]

BLAST of CSPI07G11410 vs. NCBI nr
Match: gi|659115480|ref|XP_008457579.1| (PREDICTED: uncharacterized protein LOC103497246 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 2.8e-20
Identity = 52/74 (70.27%), Postives = 63/74 (85.14%), Query Frame = 1


Query: 1   MKVLYGSQDLWDIVDIGYSEPESENGLSAQQLNELRDARKKDKKALFFIYQSVDENIFER 60
           MKVLYGSQ+LWDIV+ GY+E E+++ L+ QQL ELR+ RKKDKKALFFIYQ+VDE IFER
Sbjct: 87  MKVLYGSQELWDIVERGYTEVENQSELTNQQLVELRENRKKDKKALFFIYQAVDEFIFER 146

Query: 61  ISGVSTAKAAWDAL 75
            S  ++AKAAWD L
Sbjct: 147 FSTATSAKAAWDIL 160

The following BLAST results are available for this feature:

BLAST of CSPI07G11410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G11410 vs. TrEMBL


Match Name	E-value	Identity	Description
A6YTD9_CUCME	7.1e-23	56.19	Integrase OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0D3DHC7_BRAOL	3.4e-17	49.41	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A151TGP0_CAJCA	9.9e-17	50.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151R357_CAJCA	9.9e-17	50.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151QP37_CAJCA	9.9e-17	50.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of CSPI07G11410 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48720.1	1.8e-14	50.00	unknown protein	[more]

BLAST of CSPI07G11410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109769\|ref\|XP_008454868.1\|	1.2e-23	56.19	PREDICTED: uncharacterized protein LOC103495177 [Cucumis melo]	[more]
gi\|659099180\|ref\|XP_008450471.1\|	2.7e-23	56.88	PREDICTED: uncharacterized protein LOC103492064 [Cucumis melo]	[more]
gi\|150036244\|gb\|ABR67407.1\|	1.0e-22	56.19	integrase [Cucumis melo subsp. melo]	[more]
gi\|659119553\|ref\|XP_008459718.1\|	1.7e-22	56.19	PREDICTED: uncharacterized protein LOC103498760 [Cucumis melo]	[more]
gi\|659115480\|ref\|XP_008457579.1\|	2.8e-20	70.27	PREDICTED: uncharacterized protein LOC103497246 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G11410.1	CSPI07G11410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 39..85 score: 3.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G11410	Cucurbita pepo (Zucchini)	cpecpiB261
CSPI07G11410	Cucurbita pepo (Zucchini)	cpecpiB770
CSPI07G11410	Bottle gourd (USVL1VR-Ls)	cpilsiB501
CSPI07G11410	Bottle gourd (USVL1VR-Ls)	cpilsiB508
CSPI07G11410	Silver-seed gourd	carcpiB0240
CSPI07G11410	Melon (DHL92) v3.6.1	cpimedB526
CSPI07G11410	Cucumber (Gy14) v2	cgybcpiB092
CSPI07G11410	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G11410	Silver-seed gourd	carcpiB0690
CSPI07G11410	Silver-seed gourd	carcpiB0928
CSPI07G11410	Cucumber (Chinese Long) v3	cpicucB388
CSPI07G11410	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G11410	Watermelon (97103) v2	cpiwmbB545
CSPI07G11410	Watermelon (97103) v2	cpiwmbB555
CSPI07G11410	Wax gourd	cpiwgoB675
CSPI07G11410	Wax gourd	cpiwgoB696
CSPI07G11410	Wild cucumber (PI 183967)	cpicpiB093
CSPI07G11410	Cucumber (Gy14) v1	cgycpiB135
CSPI07G11410	Cucumber (Gy14) v1	cgycpiB364
CSPI07G11410	Cucurbita maxima (Rimu)	cmacpiB155
CSPI07G11410	Cucurbita maxima (Rimu)	cmacpiB536
CSPI07G11410	Cucurbita maxima (Rimu)	cmacpiB653
CSPI07G11410	Cucurbita moschata (Rifu)	cmocpiB527
CSPI07G11410	Cucurbita moschata (Rifu)	cmocpiB646
CSPI07G11410	Cucumber (Chinese Long) v2	cpicuB331
CSPI07G11410	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G11410	Melon (DHL92) v3.5.1	cpimeB541
CSPI07G11410	Watermelon (Charleston Gray)	cpiwcgB565
CSPI07G11410	Watermelon (Charleston Gray)	cpiwcgB577
CSPI07G11410	Watermelon (97103) v1	cpiwmB625
CSPI07G11410	Watermelon (97103) v1	cpiwmB630