CSPI07G10730 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G10730
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ty1-copia retrotransposon protein
Location	Chr7 : 8834160 .. 8837406 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAACCTCAAAAAAAGAAAGTCAAGAAAAGGAAATTCATTTGCTATGTTTGCAGAAAGGAAAGACACAAATCCTACCATTGCAATCAAAGGAATGGGAGACCAAACAACCAAAAACCAGCACCTCAAGCCAATCTTGCTGATCAAGATGATGAAGTCATAACTGCTGTTGTGGAAGTTAAACTAATTGAAAACAAGACTGAATGGATCCTGGACACTAGAGCATCTAGAGACTTCTGCACCAATCAAGAACTTCTCCATGACTACAAGGACGTTGCTGATGGAGGATACGTGTTCATGGAAAACTCAGTCACTACAAGAGTAATCAGAAAAGGGAAGATTATCTTAAAATTAACTTATGGAAAAACTTTATCTCTAAGTAATGTTTTGTATGTCTCTTCCCTACGTAGGAACTTGGTGTCTGGGAGTCTGTTGAATCGAGTGGGTCTTAAGATTTTACTAGAAGGTGACAAAGTAGTGCTCACCAAAAACGGAGAATTTGTTGGTAAGTGATATTTGTCTAATAGTCTTTTTGTACTTAATACTGTTTTTATGAATGCAATACGTCTAATTCCGCCTACATAATTGAATCTATTGATTTGTGGCATGGTAGACTAGGACACATGAATTTTGCATCAATTGGGAAGCTTAAAGATTTAAAGCTAATTAATGCATGTGAATTGCATGAAACTGGTAAATGTCCTGTATGTGTAGAAAAGTTCTTCAAGAAACCTTACAAACCTGTTATAACGACAAGTACTAAATTGTTAGAATCAATTCATTATGATCTAGCTTATTTAAAAAACACCTCTAACAGAGAAGGTAAAAATTATTATGTATCTTTTGTTGATGATTTCTCTAGATTTACTAAGGTTTATTTGATAAAATCAAAAGATGAAGCTAGTAGCATGTTTTTTAAATTTAAGTCAAAATCTGAAAATAAGCTAGGCAAAAGGATAAAAAGATTAAGATTAGATAGAGGTGGTGAGTACTCTGATAGAACTCTCAAAGAATATTGTGAATCAAATGGTATTATTCATGAATTCACTGCCCCTTACTCACTACAACAAAATGACATAGTAGAACGTAAAAATAGAACTCTTCAAAGATTTGATGAATGCTATGTTATTAAGCTTTGTTCTATCTGACAATATATGGGTGAAAGTCATGTTGTCTGCCTGTTTTGTTCTGAACAGGGTTTCCCATAGAAAATTGGACAAAAACTCCCTACGAACTCTAGAAGGGACACGCATCGAATCTCAACTACTTGAAAGTGTGGGGATGCTTGGCTAAGGTACCATTTTCGGCACTGAAGAAATCCACAGTAGGGTTTAAAAGTTTTGACGGTGTATTTATTGGTTATGGTTAAAATAGTGTTGCATATAGGTTTATGTGTTTGAATGATAAGAGCATAAATGAATCTAGGGATGCATAATTCTTTGAGCATGTATTTTCTTTAAAGAGATCTCTATTTGTTCCCTATTGATCTAGAAATATGCTTGATCTAGAGAACCCCAAAGTTGTTAGTGAAACACCTGAGTTAGGTGCTTCTAGCGTAAGATATGATTTAGAACCTATAAGAAGTAAAAGACAGAGAACTGAGACAAGTTTCAGACTCGATTTCCTAAGTACCTTTTTAATAGAAAGGCACGATGAAATTGACTGCAATTTCACTAGCTTGTTTTTAATTAATGAAGATCCTAAAAAACTTACCAGTAGGCCTTAAGCTCTGTAGAGTCCATTATGTGGAAGAAGGCTGTTAAAAGTAAATTGGATTCACTAACCATGAATCAAACATGAGAATTAGTAGACCTTCCTAAAGGAAGTAAACCAATTAAGTGTAAGTGGATCTTCAAAACAAGACCAAATGAGTCAATAGCTTTAAGGCAAGACTAGTAGTGGTAGGGTATACTCAAAAGCAAGGTATTGATTACTTTGACACTTATTCCCCTGTAACTAAGATATCCACTATTAGAGCCTTAATTGCACTAGCTGCCATTCACAACCTTCTTATTTATCAAATGGATGTGAAAATTGCCTTTCTAAATTCTGATTTAGAATAAGAAATCTATACGACTCAACCATAATGATTAAAATTTCCTAGCCAAGAAAATAAAGTATGCAGACTTAAAAAATCTTTCTATGGTCTTAAGTAGACTCCTAAACAATGGTATAGAAAATTTAATGATACTTTGATAAACAATGAATTTAAGGTAAATTCTTCAGATACATGCGATTATTCAAAGATGTATGGAGTTGAGTGCATATTAATATGTCTATATGTCGGTGACATGTTGATCTTTGAGACAAACATGGATTTAATAAAAGACACCAAGTTGTTTCTGTCATCACACTTTGAAATGAAAGACCTAGGTGAAACAGACATAATTCTTGGAGTTAAAATTAGGAAAGATGAAAATGGTTTATCCTTGTGTCAATCGCACTATGTTGAGAATTTACTAAAGAAATTTGATTCCTTTGAAGTCTCTCTACTGAAAAGATAATAAGTAGTGTGATGTATTTAATGAACTAGACTTGACCTTACATTGCATATGCTGTCAGTAGATCGAGTAGATATACACATAATCCTGATAAATACCACTGGGATGTCTTACGTCATCTGTTGAAATATCTTAAAAGGAACGGTAAATTATTGGTTGCACTTTAATAAGTTTCCTGTCGTATTAGAAGTATATTGTGATGCAAATTGGGTTACAAATAACGATGAGGTAAATTCTACTAGTGGGTACGTATTTTTGCTCGGGGTGGGAGCAATATCTTGGAAGTCTGCAAAACAGTCTTGCATAGCCAGATCCACTATGGAATCTGAGTTTATAGCATTAGAGCTGGCAGAACAAGAGGCCGAGTGAACTAAAAGTCTATTAGGAGACGTACCATTGTGGGGGACATCAGTGCCTGTTTTCGTACATGTGATTCACAGACTGCCATAAGTATTGCCAAGAACAGTGTTTATAATGGCAAGAGAAGACATATACGTCTTAGACATGGAGCTGTGAAAAATTTGCTAAAGGAAGGAACCATTTCCTTAGAATTTGTTCAGACATATGCGTGTCACACCCAAAAAATCTTATTCCTCTCGATTTTTGCTAAATTTCCAAATGCCACCCCAGATTTTGCCATTCCTATAAATTTCTCTAGAAAGAAACCCTCAAACTCACTTTCAAAAATCTCTCCTAAAATAGCCCAACGAGAACTATTTGAATTCAAGTACCACACTCGATAA

mRNA sequence

ATGGGAGAACCTCAAAAAAAGAAAGTCAAGAAAAGGAAATTCATTTGCTATGTTTGCAGAAAGGAAAGACACAAATCCTACCATTGCAATCAAAGGAATGGGAGACCAAACAACCAAAAACCAGCACCTCAAGCCAATCTTGCTGATCAAGATGATGAAGTCATAACTGCTGTTGTGGAAGTTAAACTAATTGAAAACAAGACTGAATGGATCCTGGACACTAGAGCATCTAGAGACTTCTGCACCAATCAAGAACTTCTCCATGACTACAAGGACGTTGCTGATGGAGGATACGTGTTCATGGAAAACTCAGTCACTACAAGAGTAATCAGAAAAGGGAAGATTATCTTAAAATTAACTTATGGAAAAACTTTATCTCTAAGTAATGTTTTGTATGTCTCTTCCCTACGTAGGAACTTGGTGTCTGGGAGTCTGTTGAATCGAGTGGGTCTTAAGATTTTACTAGAAGGTGACAAAGTAGTGCTCACCAAAAACGGAGAATTTGTTGGACACATGAATTTTGCATCAATTGGGAAGCTTAAAGATTTAAAGCTAATTAATGCATGTGAATTGCATGAAACTGGTAAATGTCCTAAGGGACACGCATCGAATCTCAACTACTTGAAAGTGTGGGGATGCTTGGCTAAGGTACCATTTTCGGCACTGAAGAAATCCACAGTAGGAAATATGCTTGATCTAGAGAACCCCAAAGTTGTTAGTGAAACACCTGAGTTAGGTGCTTCTAGCTTTCCTGTCGTATTAGAAGTATATTGTGATGCAAATTGGGTTACAAATAACGATGAGGTAAATTCTACTAGTGGGTACGTATTTTTGCTCGGGGTGGGAGCAATATCTTGGAAGTCTGCAAAACAGTCTTGCATAGCCAGATCCACTATGGAATCTGAGTTTATAGCATTAGAGCTGGCAGAACAAGAGGCCGATGCCTGTTTTCGTACATGTGATTCACAGACTGCCATAAGTATTGCCAAGAACAGTGTTTATAATGGCAAGAGAAGACATATACGTCTTAGACATGGAGCTGTGAAAAATTTGCTAAAGGAAGGAACCATTTCCTTAGAATTTGTTCAGACATATGCGTGTCACACCCAAAAAATCTTATTCCTCTCGATTTTTGCTAAATTTCCAAATGCCACCCCAGATTTTGCCATTCCTATAAATTTCTCTAGAAAGAAACCCTCAAACTCACTTTCAAAAATCTCTCCTAAAATAGCCCAACGAGAACTATTTGAATTCAAGTACCACACTCGATAA

Coding sequence (CDS)

ATGGGAGAACCTCAAAAAAAGAAAGTCAAGAAAAGGAAATTCATTTGCTATGTTTGCAGAAAGGAAAGACACAAATCCTACCATTGCAATCAAAGGAATGGGAGACCAAACAACCAAAAACCAGCACCTCAAGCCAATCTTGCTGATCAAGATGATGAAGTCATAACTGCTGTTGTGGAAGTTAAACTAATTGAAAACAAGACTGAATGGATCCTGGACACTAGAGCATCTAGAGACTTCTGCACCAATCAAGAACTTCTCCATGACTACAAGGACGTTGCTGATGGAGGATACGTGTTCATGGAAAACTCAGTCACTACAAGAGTAATCAGAAAAGGGAAGATTATCTTAAAATTAACTTATGGAAAAACTTTATCTCTAAGTAATGTTTTGTATGTCTCTTCCCTACGTAGGAACTTGGTGTCTGGGAGTCTGTTGAATCGAGTGGGTCTTAAGATTTTACTAGAAGGTGACAAAGTAGTGCTCACCAAAAACGGAGAATTTGTTGGACACATGAATTTTGCATCAATTGGGAAGCTTAAAGATTTAAAGCTAATTAATGCATGTGAATTGCATGAAACTGGTAAATGTCCTAAGGGACACGCATCGAATCTCAACTACTTGAAAGTGTGGGGATGCTTGGCTAAGGTACCATTTTCGGCACTGAAGAAATCCACAGTAGGAAATATGCTTGATCTAGAGAACCCCAAAGTTGTTAGTGAAACACCTGAGTTAGGTGCTTCTAGCTTTCCTGTCGTATTAGAAGTATATTGTGATGCAAATTGGGTTACAAATAACGATGAGGTAAATTCTACTAGTGGGTACGTATTTTTGCTCGGGGTGGGAGCAATATCTTGGAAGTCTGCAAAACAGTCTTGCATAGCCAGATCCACTATGGAATCTGAGTTTATAGCATTAGAGCTGGCAGAACAAGAGGCCGATGCCTGTTTTCGTACATGTGATTCACAGACTGCCATAAGTATTGCCAAGAACAGTGTTTATAATGGCAAGAGAAGACATATACGTCTTAGACATGGAGCTGTGAAAAATTTGCTAAAGGAAGGAACCATTTCCTTAGAATTTGTTCAGACATATGCGTGTCACACCCAAAAAATCTTATTCCTCTCGATTTTTGCTAAATTTCCAAATGCCACCCCAGATTTTGCCATTCCTATAAATTTCTCTAGAAAGAAACCCTCAAACTCACTTTCAAAAATCTCTCCTAAAATAGCCCAACGAGAACTATTTGAATTCAAGTACCACACTCGATAA

Homology

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BLAST of CSPI07G10730 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-11
Identity = 40/126 (31.75%), Postives = 70/126 (55.56%), Query Frame = 1


Query: 253  VLEVYCDANWVTNNDEVNSTSGYVFLLGVGAISWKSAKQSCIARSTMESEFIALELAEQE 312
            +L+ Y DA+   + D   S++GY+F    GAISW+S  Q C+A ST E+E+IA     +E
Sbjct: 1174 ILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKE 1233

Query: 313  ADACFR--------------TCDSQTAISIAKNSVYNGKRRHIRLRHGAVKNLLKEGTIS 365
                 R               CDSQ+AI ++KNS+Y+ + +HI +R+  ++ ++ + ++ 
Sbjct: 1234 MIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLK 1293

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BLAST of CSPI07G10730 vs. TrEMBL
Match: E5GBG5_CUCME (Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 6.8e-63
Identity = 147/253 (58.10%), Postives = 176/253 (69.57%), Query Frame = 1


Query: 8   KVKKRKFICYVCRKERHKSYHCNQRNGRPNNQKPAPQANLADQDDEVITAVVEVKLIENK 67
           ++KK+K +CYVCRKE HKSY CNQR GRP+ QKP PQANLA+QD E+I A+VE  LIENK
Sbjct: 274 QIKKKKLVCYVCRKEGHKSYQCNQRKGRPS-QKPTPQANLAEQDSEIIAAIVEANLIENK 333

Query: 68  TEWILDTRASRDFCTNQELLHDYKDVADGGYVFMENSVTTRVIRKGKIILKLTYGKTLSL 127
           T+WILDT ASR FCTN+ELLHDY+D  DG  VFM NS T  VI KGK+ILKLT GKTLSL
Sbjct: 334 TDWILDTGASRHFCTNRELLHDYEDTVDGECVFMGNSATAGVIGKGKVILKLTSGKTLSL 393

Query: 128 SNVLYVSSLRRNLVSGSLLNRVGLKILLEGDKVVLTKNGEFVGHMNFASIGKLKDLKLIN 187
           SNVLYV SLRRNLVSGSLLNR GLKI+LEGDKVVLTKNG FVG   + S G    L ++N
Sbjct: 394 SNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGNFVG-KGYLSNG----LFVLN 453

Query: 188 ACELHETGKCPKGHASNLNYL----KVW-GCLAKVPFSALKKSTVGNMLDLENPKVVSET 247
              ++        +AS+  YL     +W G L  V F++++K     +++       SET
Sbjct: 454 TISMN-------ANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLIN------TSET 505

Query: 248 PELGASSFPVVLE 256
            E G    PV +E
Sbjct: 514 HETG--KCPVCIE 505

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BLAST of CSPI07G10730 vs. TrEMBL
Match: Q69FA4_PHAVU (Gag-pol polyprotein OS=Phaseolus vulgaris GN=BA4 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.1e-31
Identity = 73/134 (54.48%), Postives = 94/134 (70.15%), Query Frame = 1


Query: 248  SSFPVVLEVYCDANWVTNNDEVNSTSGYVFLLGVGAISWKSAKQSCIARSTMESEFIALE 307
            S FP VLE Y DANW++++DE  STSGYVF LG GA++W+SA+Q+ IARSTMESEF+ALE
Sbjct: 1117 SGFPAVLEGYSDANWISDSDETKSTSGYVFTLGGGAVTWRSARQTIIARSTMESEFVALE 1176

Query: 308  LAEQEAD-----------------ACFRTCDSQTAISIAKNSVYNGKRRHIRLRHGAVKN 365
            +A  EA+                 +    CD Q+AI+IAKN  YNGK RHI+LRH  VK 
Sbjct: 1177 MAGSEAEWLKNFLANIPLGMKPTPSVSMHCDCQSAIAIAKNKSYNGKNRHIQLRHNLVKQ 1236

[Close]

BLAST of CSPI07G10730 vs. TrEMBL
Match: A0A151TB57_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_018882 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.9e-31
Identity = 73/134 (54.48%), Postives = 93/134 (69.40%), Query Frame = 1


Query: 248  SSFPVVLEVYCDANWVTNNDEVNSTSGYVFLLGVGAISWKSAKQSCIARSTMESEFIALE 307
            S FP VLE Y DANW++++DE  STSGYVF LG GAI+W+S +QS IARSTMESEF+ALE
Sbjct: 1042 SGFPAVLEGYSDANWISDSDETKSTSGYVFTLGGGAIAWRSVRQSIIARSTMESEFVALE 1101

Query: 308  LAEQEAD-----------------ACFRTCDSQTAISIAKNSVYNGKRRHIRLRHGAVKN 365
            +   EA+                 +    CD+Q+AI+IAKN  YNGK RHI+LRH  VK 
Sbjct: 1102 MTSTEAEWLRNFLANIPLGMKPTPSVSIHCDNQSAIAIAKNKSYNGKNRHIQLRHNIVKQ 1161

[Close]

BLAST of CSPI07G10730 vs. TrEMBL
Match: A0A151TB60_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_018881 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.9e-31
Identity = 73/134 (54.48%), Postives = 93/134 (69.40%), Query Frame = 1


Query: 248 SSFPVVLEVYCDANWVTNNDEVNSTSGYVFLLGVGAISWKSAKQSCIARSTMESEFIALE 307
           S FP VLE Y DANW++++DE  STSGYVF LG GAI+W+S +QS IARSTMESEF+ALE
Sbjct: 839 SGFPAVLEGYSDANWISDSDETKSTSGYVFTLGGGAIAWRSVRQSIIARSTMESEFVALE 898

Query: 308 LAEQEAD-----------------ACFRTCDSQTAISIAKNSVYNGKRRHIRLRHGAVKN 365
           +   EA+                 +    CD+Q+AI+IAKN  YNGK RHI+LRH  VK 
Sbjct: 899 MTSTEAEWLRNFLANIPLGMKPTPSVSIHCDNQSAIAIAKNKSYNGKNRHIQLRHNIVKQ 958

[Close]

BLAST of CSPI07G10730 vs. TrEMBL
Match: A0A151SIM4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_000847 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.9e-31
Identity = 73/134 (54.48%), Postives = 93/134 (69.40%), Query Frame = 1


Query: 248 SSFPVVLEVYCDANWVTNNDEVNSTSGYVFLLGVGAISWKSAKQSCIARSTMESEFIALE 307
           S FP VLE Y DANW++++DE  STSGYVF LG GAI+W+S +QS IARSTMESEF+ALE
Sbjct: 727 SGFPAVLEGYSDANWISDSDETKSTSGYVFTLGGGAIAWRSVRQSIIARSTMESEFVALE 786

Query: 308 LAEQEAD-----------------ACFRTCDSQTAISIAKNSVYNGKRRHIRLRHGAVKN 365
           +   EA+                 +    CD+Q+AI+IAKN  YNGK RHI+LRH  VK 
Sbjct: 787 MTSTEAEWLRNFLENIPLGMKPTPSVSIHCDNQSAIAIAKNKSYNGKNRHIQLRHNIVKQ 846

[Close]

BLAST of CSPI07G10730 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-10
Identity = 40/131 (30.53%), Postives = 65/131 (49.62%), Query Frame = 1


Query: 247 ASSFPVVLEVYCDANWVTNNDEVNSTSGYVFLLGVGAISWKSAKQSCIARSTMESEFIAL 306
           +S   + L+V+ DA++ +  D   ST+GY   LG   ISWKS KQ  +++S+ E+E+ AL
Sbjct: 435 SSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRAL 494

Query: 307 ELAEQE---------------ADACFRTCDSQTAISIAKNSVYNGKRRHIRLR-HGAVKN 362
             A  E               +      CD+  AI IA N+V++ + +HI    H   + 
Sbjct: 495 SFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554

[Close]

BLAST of CSPI07G10730 vs. NCBI nr
Match: gi|307135946|gb|ADN33807.1| (ty1-copia retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 249.6 bits (636), Expect = 9.8e-63
Identity = 147/253 (58.10%), Postives = 176/253 (69.57%), Query Frame = 1


Query: 8   KVKKRKFICYVCRKERHKSYHCNQRNGRPNNQKPAPQANLADQDDEVITAVVEVKLIENK 67
           ++KK+K +CYVCRKE HKSY CNQR GRP+ QKP PQANLA+QD E+I A+VE  LIENK
Sbjct: 274 QIKKKKLVCYVCRKEGHKSYQCNQRKGRPS-QKPTPQANLAEQDSEIIAAIVEANLIENK 333

Query: 68  TEWILDTRASRDFCTNQELLHDYKDVADGGYVFMENSVTTRVIRKGKIILKLTYGKTLSL 127
           T+WILDT ASR FCTN+ELLHDY+D  DG  VFM NS T  VI KGK+ILKLT GKTLSL
Sbjct: 334 TDWILDTGASRHFCTNRELLHDYEDTVDGECVFMGNSATAGVIGKGKVILKLTSGKTLSL 393

Query: 128 SNVLYVSSLRRNLVSGSLLNRVGLKILLEGDKVVLTKNGEFVGHMNFASIGKLKDLKLIN 187
           SNVLYV SLRRNLVSGSLLNR GLKI+LEGDKVVLTKNG FVG   + S G    L ++N
Sbjct: 394 SNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGNFVG-KGYLSNG----LFVLN 453

Query: 188 ACELHETGKCPKGHASNLNYL----KVW-GCLAKVPFSALKKSTVGNMLDLENPKVVSET 247
              ++        +AS+  YL     +W G L  V F++++K     +++       SET
Sbjct: 454 TISMN-------ANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLIN------TSET 505

Query: 248 PELGASSFPVVLE 256
            E G    PV +E
Sbjct: 514 HETG--KCPVCIE 505

[Close]

BLAST of CSPI07G10730 vs. NCBI nr
Match: gi|659123904|ref|XP_008461895.1| (PREDICTED: uncharacterized protein LOC103500390 [Cucumis melo])

HSP 1 Score: 247.3 bits (630), Expect = 4.8e-62
Identity = 134/220 (60.91%), Postives = 160/220 (72.73%), Query Frame = 1


Query: 6   KKKVKKRKFICYVCRKERHKSYHCNQRNGRPNNQKPAPQANLADQDDEVITAVVEVKLIE 65
           ++++KK+K +CYVC KE HKSY CNQR GRPN QKP PQANLA+QD+E+I A+VE  LIE
Sbjct: 123 RRQIKKKKLVCYVCGKEGHKSYQCNQRKGRPN-QKPTPQANLAEQDNEIIAAIVEANLIE 182

Query: 66  NKTEWILDTRASRDFCTNQELLHDYKDVADGGYVFMENSVTTRVIRKGKIILKLTYGKTL 125
           NKT WILDT ASR FCTN ELLHDY+D  D  YVFM NS T RVI KGK+ILKLT GKTL
Sbjct: 183 NKTNWILDTGASRHFCTNLELLHDYEDTTDEEYVFMGNSATARVIGKGKVILKLTSGKTL 242

Query: 126 SLSNVLYVSSLRRNLVSGSLLNRVGLKILLEGDKVVLTKNGEFVGHMNFASIGKLKDLKL 185
           SLSNVLYV SLRRNLVSGSLLNR GLKI+LEGDKVVLT N EFVG    ++      L +
Sbjct: 243 SLSNVLYVPSLRRNLVSGSLLNRAGLKIILEGDKVVLTNNEEFVGKRYLSN-----SLFV 302

Query: 186 INACELHETGKCPKGHASNLNYLKVW-GCLAKVPFSALKK 225
           +N   ++         A  +  + +W G L  V F++++K
Sbjct: 303 LNTFSMNANA---SSSAYMIESVNLWHGRLGHVNFASIRK 333

[Close]

BLAST of CSPI07G10730 vs. NCBI nr
Match: gi|659114583|ref|XP_008457127.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 3.1e-61
Identity = 134/218 (61.47%), Postives = 162/218 (74.31%), Query Frame = 1


Query: 8   KVKKRKFICYVCRKERHKSYHCNQRNGRPNNQKPAPQANLADQDDEVITAVVEVKLIENK 67
           ++KK+K +CYVC KE HKSY CNQR GRP+ QKP PQANL +QD+E+I A+VE  LIENK
Sbjct: 703 QIKKKKLVCYVCGKEGHKSYQCNQRKGRPS-QKPTPQANLVEQDNEIIAAIVEANLIENK 762

Query: 68  TEWILDTRASRDFCTNQELLHDYKDVADGGYVFMENSVTTRVIRKGKIILKLTYGKTLSL 127
           T+WILDT ASR FCTN+ELLHDYKD  DG  VFMENS TTRVI KGK+IL LT GKTLSL
Sbjct: 763 TDWILDTGASRHFCTNRELLHDYKDTTDGECVFMENSATTRVIGKGKVILNLTSGKTLSL 822

Query: 128 SNVLYVSSLRRNLVSGSLLNRVGLKILLEGDKVVLTKNGEFVGHMNFASIGKLKDLKLIN 187
           SNVLYV SLRRNLVSGS+LN+VGLK +LE DKVVLTKN +FVG   + S G    L ++N
Sbjct: 823 SNVLYVPSLRRNLVSGSMLNQVGLKTVLEDDKVVLTKNEDFVG-KGYLSNG----LFVLN 882

Query: 188 ACELHETGKCPKGHASNLNYLKVW-GCLAKVPFSALKK 225
              ++E        A  +  + +W G L  V F++++K
Sbjct: 883 TIFINENA---SSSAYVIESVNLWHGRLGHVNFASIRK 911

[Close]

BLAST of CSPI07G10730 vs. NCBI nr
Match: gi|659102488|ref|XP_008452160.1| (PREDICTED: uncharacterized protein LOC103493265 [Cucumis melo])

HSP 1 Score: 193.4 bits (490), Expect = 8.3e-46
Identity = 100/131 (76.34%), Postives = 109/131 (83.21%), Query Frame = 1


Query: 40  KPAPQANLADQDDEVITAVVEVKLIENKTEWILDTRASRDFCTNQELLHDYKDVADGGYV 99
           KP PQANLA+QD E+I A+VE  LIENKT+WILDT ASR FCTN+ELLHDY+D ADG  V
Sbjct: 281 KPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECV 340

Query: 100 FMENSVTTRVIRKGKIILKLTYGKTLSLSNVLYVSSLRRNLVSGSLLNRVGLKILLEGDK 159
           FM NS T  VI KG +ILKLT GKTLSLSNVLYV SLRRNLVSGSLLN   LKI+LEGDK
Sbjct: 341 FMGNSATAGVIGKGTVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNPARLKIVLEGDK 400

Query: 160 VVLTKNGEFVG 171
           V LTKNG+FVG
Sbjct: 401 VFLTKNGDFVG 411

[Close]

BLAST of CSPI07G10730 vs. NCBI nr
Match: gi|659074579|ref|XP_008437680.1| (PREDICTED: uncharacterized protein LOC103483020 [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 1.6e-44
Identity = 105/160 (65.62%), Postives = 119/160 (74.38%), Query Frame = 1


Query: 49  DQDDEVITAVVEVKLIENKTEWILDTRASRDFCTNQELLHDYKDVADGGYVFMENSVTTR 108
           +QD+EVI AVVEV LIENK +WIL+TR SR FC NQELLHDY+D +DG  VFM+NS T R
Sbjct: 30  EQDNEVIAAVVEVNLIENKPDWILETRPSRYFCINQELLHDYEDTSDGECVFMKNSATAR 89

Query: 109 VIRKGKIILKLTYGKTLSLSNVLYVSSLRRNLVSGSLLNRVGLKILLEGDKVVLTKNGEF 168
           VI K K ILKLT  KTLS    LYV SLR NLVSGSLLN+ GLKI+LEGDKV LTKN EF
Sbjct: 90  VIEKRKAILKLTSEKTLS----LYVPSLRSNLVSGSLLNQTGLKIVLEGDKVRLTKNEEF 149

Query: 169 V-----------GHMNFASIGKLKDLKLINACELHETGKC 198
           +            H+NFASI KLKDL+LI+  E HE+GKC
Sbjct: 150 IVEFVDIWHGRLRHVNFASIRKLKDLRLIDTSESHESGKC 185

The following BLAST results are available for this feature:

BLAST of CSPI07G10730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	1.7e-11	31.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CSPI07G10730 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBG5_CUCME	6.8e-63	58.10	Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
Q69FA4_PHAVU	3.1e-31	54.48	Gag-pol polyprotein OS=Phaseolus vulgaris GN=BA4 PE=4 SV=1	[more]
A0A151TB57_CAJCA	6.9e-31	54.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151TB60_CAJCA	6.9e-31	54.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]
A0A151SIM4_CAJCA	6.9e-31	54.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of CSPI07G10730 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	1.6e-10	30.53	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

BLAST of CSPI07G10730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135946\|gb\|ADN33807.1\|	9.8e-63	58.10	ty1-copia retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659123904\|ref\|XP_008461895.1\|	4.8e-62	60.91	PREDICTED: uncharacterized protein LOC103500390 [Cucumis melo]	[more]
gi\|659114583\|ref\|XP_008457127.1\|	3.1e-61	61.47	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis me...	[more]
gi\|659102488\|ref\|XP_008452160.1\|	8.3e-46	76.34	PREDICTED: uncharacterized protein LOC103493265 [Cucumis melo]	[more]
gi\|659074579\|ref\|XP_008437680.1\|	1.6e-44	65.63	PREDICTED: uncharacterized protein LOC103483020 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G10730.1	CSPI07G10730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 11..180 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G10730	Cucurbita pepo (Zucchini)	cpecpiB260
CSPI07G10730	Cucurbita pepo (Zucchini)	cpecpiB303
CSPI07G10730	Cucurbita pepo (Zucchini)	cpecpiB693
CSPI07G10730	Bottle gourd (USVL1VR-Ls)	cpilsiB504
CSPI07G10730	Bottle gourd (USVL1VR-Ls)	cpilsiB511
CSPI07G10730	Melon (DHL92) v3.6.1	cpimedB502
CSPI07G10730	Melon (DHL92) v3.6.1	cpimedB526
CSPI07G10730	Cucumber (Gy14) v2	cgybcpiB296
CSPI07G10730	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G10730	Silver-seed gourd	carcpiB0379
CSPI07G10730	Silver-seed gourd	carcpiB0428
CSPI07G10730	Silver-seed gourd	carcpiB0570
CSPI07G10730	Cucumber (Chinese Long) v3	cpicucB410
CSPI07G10730	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G10730	Watermelon (97103) v2	cpiwmbB548
CSPI07G10730	Watermelon (97103) v2	cpiwmbB585
CSPI07G10730	Wax gourd	cpiwgoB682
CSPI07G10730	Wax gourd	cpiwgoB695
CSPI07G10730	Wild cucumber (PI 183967)	cpicpiB190
CSPI07G10730	Cucumber (Gy14) v1	cgycpiB158
CSPI07G10730	Cucumber (Gy14) v1	cgycpiB357
CSPI07G10730	Cucurbita maxima (Rimu)	cmacpiB146
CSPI07G10730	Cucurbita maxima (Rimu)	cmacpiB535
CSPI07G10730	Cucurbita maxima (Rimu)	cmacpiB577
CSPI07G10730	Cucurbita moschata (Rifu)	cmocpiB132
CSPI07G10730	Cucurbita moschata (Rifu)	cmocpiB526
CSPI07G10730	Cucurbita moschata (Rifu)	cmocpiB566
CSPI07G10730	Cucumber (Chinese Long) v2	cpicuB352
CSPI07G10730	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G10730	Melon (DHL92) v3.5.1	cpimeB523
CSPI07G10730	Melon (DHL92) v3.5.1	cpimeB541
CSPI07G10730	Watermelon (Charleston Gray)	cpiwcgB542
CSPI07G10730	Watermelon (Charleston Gray)	cpiwcgB570
CSPI07G10730	Watermelon (97103) v1	cpiwmB570
CSPI07G10730	Watermelon (97103) v1	cpiwmB618