CSPI07G10470 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G10470
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr7 : 8565416 .. 8565637 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTAGCAAGGTATGATATTGAGAAGTTTGATGGTAAGGGAGATTTTACCTTATGGAAAGCTAAGATCAAAGCAATAGTCGACAAGAAAAAGGCATTGGAAGCCCTCACATATTTAGAAAAGCTACCTGAAACAATGACTCAAGAAGACAAAGAAACTGTGGAGAATGCAGCCTATGGTGTCATAGTTTTAAACCTAAGTGACAATGTTCTTAGGGAG

mRNA sequence

ATGGCAGTAGCAAGGTATGATATTGAGAAGTTTGATGGTAAGGGAGATTTTACCTTATGGAAAGCTAAGATCAAAGCAATAGTCGACAAGAAAAAGGCATTGGAAGCCCTCACATATTTAGAAAAGCTACCTGAAACAATGACTCAAGAAGACAAAGAAACTGTGGAGAATGCAGCCTATGGTGTCATAGTTTTAAACCTAAGTGACAATGTTCTTAGGGAG

Coding sequence (CDS)

ATGGCAGTAGCAAGGTATGATATTGAGAAGTTTGATGGTAAGGGAGATTTTACCTTATGGAAAGCTAAGATCAAAGCAATAGTCGACAAGAAAAAGGCATTGGAAGCCCTCACATATTTAGAAAAGCTACCTGAAACAATGACTCAAGAAGACAAAGAAACTGTGGAGAATGCAGCCTATGGTGTCATAGTTTTAAACCTAAGTGACAATGTTCTTAGGGAG

Homology

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BLAST of CSPI07G10470 vs. TrEMBL
Match: A0A151RWE4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_031512 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.4e-10
Identity = 33/74 (44.59%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 1  MAVARYDIEKFDGKGDFTLWKAKIKAIVDKKKALEALTYLEKLPETMTQEDKETVENAAY 60
          M++ ++DI+KF+G  DFTLWK K+KA++  +    AL   +KLP TMT ++K+ +   A+
Sbjct: 1  MSLYKFDIDKFNGSNDFTLWKLKMKAVIVHQGCAAALEGADKLPITMTDDEKKAMLEKAH 60

Query: 61 GVIVLNLSDNVLRE 75
           +I+L+L+D VLRE
Sbjct: 61 NLILLSLTDEVLRE 74

[Close]

BLAST of CSPI07G10470 vs. TrEMBL
Match: A5BE52_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039063 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.6e-10
Identity = 33/74 (44.59%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 1   MAVARYDIEKFDGKGDFTLWKAKIKAIVDKKKALEALTYLEKLPETMTQEDKETVENAAY 60
           M+  ++++EKF+G  DFTLWK K+KA++ ++K  +A+   EKLP  +T  +KE V + A+
Sbjct: 408 MSSQKFEVEKFNGSNDFTLWKLKMKALLVQQKCAQAIEGEEKLPVGLTAAEKEEVVSRAH 467

Query: 61  GVIVLNLSDNVLRE 75
             I+L+L+D VLRE
Sbjct: 468 SAILLSLADEVLRE 481

[Close]

BLAST of CSPI07G10470 vs. TrEMBL
Match: A0A151U102_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_005583 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.9e-09
Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 1  MAVARYDIEKFDGKGDFTLWKAKIKAIVDKKKALEALTYLEKLPETMTQEDKETVENAAY 60
          M+  ++DI+KF+G  DFTLWK K+KA++  +    AL   +KLP TM  +DK+ +   A+
Sbjct: 1  MSSYKFDIDKFNGSNDFTLWKLKMKAVLVHQGCAAALEGADKLPITMIDDDKKAMLEKAH 60

Query: 61 GVIVLNLSDNVLRE 75
           +I+L+L+D VLRE
Sbjct: 61 SLILLSLTDEVLRE 74

[Close]

BLAST of CSPI07G10470 vs. TrEMBL
Match: A0A151TJ18_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_013361 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-09
Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 1  MAVARYDIEKFDGKGDFTLWKAKIKAIVDKKKALEALTYLEKLPETMTQEDKETVENAAY 60
          M+  ++DI+KF+G  DFTLWK K+KA++  +    AL   +KLP TMT + K+ +   A+
Sbjct: 1  MSSYKFDIDKFNGSNDFTLWKLKMKAVLVHQGCAAALEGADKLPTTMTDDVKKAMLEKAH 60

Query: 61 GVIVLNLSDNVLRE 75
           +I+L+L+D VLRE
Sbjct: 61 SLILLSLTDEVLRE 74

[Close]

BLAST of CSPI07G10470 vs. TrEMBL
Match: A5BPE6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044177 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.9e-09
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 1


Query: 1  MAVARYDIEKFDGKGDFTLWKAKIKAIVDKKKALEALTYLEKLPETMTQEDKETVENAAY 60
          M+  ++++EKF+G  DFTLWK K+KA++ ++K  +A+   E LP  +T  +KE V + A+
Sbjct: 1  MSSQKFEVEKFNGSNDFTLWKLKMKALLVQQKCAQAIEGEETLPVGLTAVEKEEVVSRAH 60

Query: 61 GVIVLNLSDNVLRE 75
            I+L+L+D VLRE
Sbjct: 61 SAILLSLADEVLRE 74

[Close]

BLAST of CSPI07G10470 vs. NCBI nr
Match: gi|659123171|ref|XP_008461529.1| (PREDICTED: uncharacterized protein LOC103500101 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-14
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1


Query: 1  MAVARYDIEKFDGKGDFTLWKAKIKAIVDKKKALEALTYLEKLPETMTQEDKETVENAAY 60
          MAVARY+IEKFD K DFT WKAKIKAI+D++K  +AL  L+     MT + KET++NA Y
Sbjct: 1  MAVARYNIEKFDRKEDFTFWKAKIKAIIDQQKTFKALWILKSYLLQMTHKKKETMKNATY 60

Query: 61 GVIVLNLSDNVLRE 75
            I+LNL  NVLR+
Sbjct: 61 VFIILNLRGNVLRK 74

[Close]

BLAST of CSPI07G10470 vs. NCBI nr
Match: gi|1012335540|gb|KYP46866.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 33/74 (44.59%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 1  MAVARYDIEKFDGKGDFTLWKAKIKAIVDKKKALEALTYLEKLPETMTQEDKETVENAAY 60
          M++ ++DI+KF+G  DFTLWK K+KA++  +    AL   +KLP TMT ++K+ +   A+
Sbjct: 1  MSLYKFDIDKFNGSNDFTLWKLKMKAVIVHQGCAAALEGADKLPITMTDDEKKAMLEKAH 60

Query: 61 GVIVLNLSDNVLRE 75
           +I+L+L+D VLRE
Sbjct: 61 NLILLSLTDEVLRE 74

[Close]

BLAST of CSPI07G10470 vs. NCBI nr
Match: gi|658032800|ref|XP_008351909.1| (PREDICTED: transcription initiation factor TFIID subunit 2-like [Malus domestica])

HSP 1 Score: 71.2 bits (173), Expect = 8.3e-10
Identity = 33/70 (47.14%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 5  RYDIEKFDGKGDFTLWKAKIKAIVDKKKALEALTYLEKLPETMTQEDKETVENAAYGVIV 64
          +YDIEKF+G+ DF+LW+ K++A++ ++  L+AL  +E LP+  + E+KE   N A+  I+
Sbjct: 4  KYDIEKFNGRNDFSLWRVKMRAVLVQQGLLKALQGVEALPQDWSAEEKEDALNRAHSAIM 63

Query: 65 LNLSDNVLRE 75
          L+LSD VLRE
Sbjct: 64 LSLSDEVLRE 73

[Close]

BLAST of CSPI07G10470 vs. NCBI nr
Match: gi|147769855|emb|CAN61272.1| (hypothetical protein VITISV_039063 [Vitis vinifera])

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 33/74 (44.59%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 1   MAVARYDIEKFDGKGDFTLWKAKIKAIVDKKKALEALTYLEKLPETMTQEDKETVENAAY 60
           M+  ++++EKF+G  DFTLWK K+KA++ ++K  +A+   EKLP  +T  +KE V + A+
Sbjct: 408 MSSQKFEVEKFNGSNDFTLWKLKMKALLVQQKCAQAIEGEEKLPVGLTAAEKEEVVSRAH 467

Query: 61  GVIVLNLSDNVLRE 75
             I+L+L+D VLRE
Sbjct: 468 SAILLSLADEVLRE 481

[Close]

BLAST of CSPI07G10470 vs. NCBI nr
Match: gi|1012361794|gb|KYP72977.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 68.9 bits (167), Expect = 4.1e-09
Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 1  MAVARYDIEKFDGKGDFTLWKAKIKAIVDKKKALEALTYLEKLPETMTQEDKETVENAAY 60
          M+  ++DI+KF+G  DFTLWK K+KA++  +    AL   +KLP TM  +DK+ +   A+
Sbjct: 1  MSSYKFDIDKFNGSNDFTLWKLKMKAVLVHQGCAAALEGADKLPITMIDDDKKAMLEKAH 60

Query: 61 GVIVLNLSDNVLRE 75
           +I+L+L+D VLRE
Sbjct: 61 SLILLSLTDEVLRE 74

The following BLAST results are available for this feature:

BLAST of CSPI07G10470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G10470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151RWE4_CAJCA	4.4e-10	44.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A5BE52_VITVI	7.6e-10	44.59	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039063 PE=4 SV=1	[more]
A0A151U102_CAJCA	2.9e-09	44.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151TJ18_CAJCA	3.8e-09	44.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A5BPE6_VITVI	4.9e-09	43.24	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044177 PE=4 SV=1	[more]

BLAST of CSPI07G10470 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G10470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123171\|ref\|XP_008461529.1\|	2.5e-14	59.46	PREDICTED: uncharacterized protein LOC103500101 [Cucumis melo]	[more]
gi\|1012335540\|gb\|KYP46866.1\|	6.4e-10	44.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|658032800\|ref\|XP_008351909.1\|	8.3e-10	47.14	PREDICTED: transcription initiation factor TFIID subunit 2-like [Malus domestica...	[more]
gi\|147769855\|emb\|CAN61272.1\|	1.1e-09	44.59	hypothetical protein VITISV_039063 [Vitis vinifera]	[more]
gi\|1012361794\|gb\|KYP72977.1\|	4.1e-09	44.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G10470.1	CSPI07G10470.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G10470	Cucsa.239400	Cucumber (Gy14) v1	cgycpiB357

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G10470	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G10470	Silver-seed gourd	carcpiB0359
CSPI07G10470	Cucumber (Chinese Long) v3	cpicucB397
CSPI07G10470	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G10470	Cucumber (Chinese Long) v3	cpicucB417
CSPI07G10470	Watermelon (97103) v2	cpiwmbB566
CSPI07G10470	Watermelon (97103) v2	cpiwmbB572
CSPI07G10470	Wax gourd	cpiwgoB660
CSPI07G10470	Wax gourd	cpiwgoB668
CSPI07G10470	Wild cucumber (PI 183967)	cpicpiB145
CSPI07G10470	Wild cucumber (PI 183967)	cpicpiB193
CSPI07G10470	Cucurbita maxima (Rimu)	cmacpiB390
CSPI07G10470	Cucurbita maxima (Rimu)	cmacpiB937
CSPI07G10470	Cucurbita moschata (Rifu)	cmocpiB379
CSPI07G10470	Cucurbita moschata (Rifu)	cmocpiB916
CSPI07G10470	Cucumber (Chinese Long) v2	cpicuB341
CSPI07G10470	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G10470	Cucumber (Chinese Long) v2	cpicuB356
CSPI07G10470	Melon (DHL92) v3.5.1	cpimeB541
CSPI07G10470	Melon (DHL92) v3.5.1	cpimeB566
CSPI07G10470	Watermelon (Charleston Gray)	cpiwcgB591
CSPI07G10470	Watermelon (97103) v1	cpiwmB607
CSPI07G10470	Watermelon (97103) v1	cpiwmB633
CSPI07G10470	Cucurbita pepo (Zucchini)	cpecpiB161
CSPI07G10470	Cucurbita pepo (Zucchini)	cpecpiB348
CSPI07G10470	Cucurbita pepo (Zucchini)	cpecpiB639
CSPI07G10470	Bottle gourd (USVL1VR-Ls)	cpilsiB495
CSPI07G10470	Bottle gourd (USVL1VR-Ls)	cpilsiB542
CSPI07G10470	Melon (DHL92) v3.6.1	cpimedB526
CSPI07G10470	Melon (DHL92) v3.6.1	cpimedB551