CSPI07G09970 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G09970
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrotransposable element Tf2
LocationChr7 : 8033996 .. 8034430 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGAAGAGAAGTTCATTACCAAGTTGGAGATTTGGTATTGTTAAAGATAAGACCATATCAGCAAGTAACTGTCAGAAGAAAAAGAAATGAAAAACTCTCTCCTAAATTATTTGGGTCGTACAAAGTGATAGCTAAAATTGGTCAGATAGCTTACAAGCTAGAACTTCTAGAGAATTCTACCATACACCCGGTATTTCATGTATCGCAGCTAAAGAAAGCAATGGGAGAGCACGAGGAAGACAGGAATGACGTTCCATGTTTAACTGAAAATCATGAATATTGGAGAGATATTCCAGAAGAGGTTTATGGTTATTCGAAAAACAAACCGGGAAGTTGGGATGTGTTGGTGCAGTGGAAGGGTCTTCCACAACATGAGGCTACTTGGGAGTTATATGAGGATTTGAAGCAGCGGTTTCCAGATTTTAGGTGA

mRNA sequence

ATGAAGAGAAGAGAAGTTCATTACCAAGTTGGAGATTTGGTATTGTTAAAGATAAGACCATATCAGCAAGTAACTGTCAGAAGAAAAAGAAATGAAAAACTCTCTCCTAAATTATTTGGGTCGTACAAAGTGATAGCTAAAATTGGTCAGATAGCTTACAAGCTAGAACTTCTAGAGAATTCTACCATACACCCGGTATTTCATGTATCGCAGCTAAAGAAAGCAATGGGAGAGCACGAGGAAGACAGGAATGACGTTCCATGTTTAACTGAAAATCATGAATATTGGAGAGATATTCCAGAAGAGGTTTATGGTTATTCGAAAAACAAACCGGGAAGTTGGGATGTGTTGGTGCAGTGGAAGGGTCTTCCACAACATGAGGCTACTTGGGAGTTATATGAGGATTTGAAGCAGCGGTTTCCAGATTTTAGGTGA

Coding sequence (CDS)

ATGAAGAGAAGAGAAGTTCATTACCAAGTTGGAGATTTGGTATTGTTAAAGATAAGACCATATCAGCAAGTAACTGTCAGAAGAAAAAGAAATGAAAAACTCTCTCCTAAATTATTTGGGTCGTACAAAGTGATAGCTAAAATTGGTCAGATAGCTTACAAGCTAGAACTTCTAGAGAATTCTACCATACACCCGGTATTTCATGTATCGCAGCTAAAGAAAGCAATGGGAGAGCACGAGGAAGACAGGAATGACGTTCCATGTTTAACTGAAAATCATGAATATTGGAGAGATATTCCAGAAGAGGTTTATGGTTATTCGAAAAACAAACCGGGAAGTTGGGATGTGTTGGTGCAGTGGAAGGGTCTTCCACAACATGAGGCTACTTGGGAGTTATATGAGGATTTGAAGCAGCGGTTTCCAGATTTTAGGTGA
Homology
[Close]
BLAST of CSPI07G09970 vs. TrEMBL
Match: A5CAG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.0e-26
Identity = 65/144 (45.14%), Postives = 94/144 (65.28%), Query Frame = 1 

Query: 3   RREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENST 62
           R  V ++VGD V +K+RPY   ++ ++ NEKLSP+ FG YKV+ +I  +AY+LEL  ++T
Sbjct: 855 RXAVQFEVGDFVYIKLRPYXLRSLAKRPNEKLSPRYFGPYKVVXQIXXVAYRLELPXSTT 914

Query: 63  IHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPEEV---YGYSKNKPGSWDVLVQ 122
           IH VFHVS LK+A+G  +  +   P L E+ E W   P++V   +    N     +VL+Q
Sbjct: 915 IHXVFHVSXLKRALGSADLCQPLSPILVEDLE-WLVEPDQVLDIHQSPNNNQLGIEVLIQ 974

Query: 123 WKGLPQHEATWELYEDLKQRFPDF 144
           WKGLPQ EA+WE  + +K+ FPDF
Sbjct: 975 WKGLPQFEASWESVDTIKEHFPDF 997

[Close]
BLAST of CSPI07G09970 vs. TrEMBL
Match: B5U9W4_LOTJA (Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.6e-26
Identity = 62/140 (44.29%), Postives = 91/140 (65.00%), Query Frame = 1 

Query: 3    RREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENST 62
            RR+V Y+VGDLV LKI+PY+  ++ ++ N+KLSP+ +G Y +IAKI   AYKL+L E S 
Sbjct: 1377 RRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQ 1436

Query: 63   IHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPEEVYGYSKNKPGSWDVLVQWKG 122
            +HPVFH+S LKKA+    + +     LTE  E  +  PE +    +N+ G  +VL++WK 
Sbjct: 1437 VHPVFHISLLKKAVNAGVQSQPLPAALTEEWEL-KVEPEAIMDTRENRDGDLEVLIRWKD 1496

Query: 123  LPQHEATWELYEDLKQRFPD 143
            LP  E +WE +  L  +FP+
Sbjct: 1497 LPTFEDSWEDFSKLLDQFPN 1515

[Close]
BLAST of CSPI07G09970 vs. TrEMBL
Match: B5U9W0_LOTJA (Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.6e-26
Identity = 62/140 (44.29%), Postives = 91/140 (65.00%), Query Frame = 1 

Query: 3    RREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENST 62
            RR+V Y+VGDLV LKI+PY+  ++ ++ N+KLSP+ +G Y +IAKI   AYKL+L E S 
Sbjct: 1377 RRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQ 1436

Query: 63   IHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPEEVYGYSKNKPGSWDVLVQWKG 122
            +HPVFH+S LKKA+    + +     LTE  E  +  PE +    +N+ G  +VL++WK 
Sbjct: 1437 VHPVFHISLLKKAVNAGVQSQPLPAALTEEWEL-KVEPEAIMDTRENRDGDLEVLIRWKD 1496

Query: 123  LPQHEATWELYEDLKQRFPD 143
            LP  E +WE +  L  +FP+
Sbjct: 1497 LPTFEDSWEDFSKLLDQFPN 1515

[Close]
BLAST of CSPI07G09970 vs. TrEMBL
Match: B5U9W1_LOTJA (Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.6e-26
Identity = 62/140 (44.29%), Postives = 91/140 (65.00%), Query Frame = 1 

Query: 3    RREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENST 62
            RR+V Y+VGDLV LKI+PY+  ++ ++ N+KLSP+ +G Y +IAKI   AYKL+L E S 
Sbjct: 1377 RRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQ 1436

Query: 63   IHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPEEVYGYSKNKPGSWDVLVQWKG 122
            +HPVFH+S LKKA+    + +     LTE  E  +  PE +    +N+ G  +VL++WK 
Sbjct: 1437 VHPVFHISLLKKAVNAGVQSQPLPAALTEEWEL-KVEPEAIMDTRENRDGDLEVLIRWKD 1496

Query: 123  LPQHEATWELYEDLKQRFPD 143
            LP  E +WE +  L  +FP+
Sbjct: 1497 LPTFEDSWEDFSKLLDQFPN 1515

[Close]
BLAST of CSPI07G09970 vs. TrEMBL
Match: B5U9V8_LOTJA (Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.6e-26
Identity = 62/140 (44.29%), Postives = 91/140 (65.00%), Query Frame = 1 

Query: 3    RREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENST 62
            RR+V Y+VGDLV LKI+PY+  ++ ++ N+KLSP+ +G Y +IAKI   AYKL+L E S 
Sbjct: 1377 RRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQ 1436

Query: 63   IHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPEEVYGYSKNKPGSWDVLVQWKG 122
            +HPVFH+S LKKA+    + +     LTE  E  +  PE +    +N+ G  +VL++WK 
Sbjct: 1437 VHPVFHISLLKKAVNAGVQSQPLPAALTEEWEL-KVEPEAIMDTRENRDGDLEVLIRWKD 1496

Query: 123  LPQHEATWELYEDLKQRFPD 143
            LP  E +WE +  L  +FP+
Sbjct: 1497 LPTFEDSWEDFSKLLDQFPN 1515

[Close]
BLAST of CSPI07G09970 vs. NCBI nr
Match: gi|659131181|ref|XP_008465551.1| (PREDICTED: uncharacterized protein LOC103503179 [Cucumis melo])

HSP 1 Score: 170.2 bits (430), Expect = 2.6e-39
Identity = 80/141 (56.74%), Postives = 107/141 (75.89%), Query Frame = 1 

Query: 1   MKRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLEN 60
           +KRR V ++  ++V LKIRPY+QV++R++RNEKLS K FG Y+++ +IG +AYKLEL  +
Sbjct: 53  LKRRHVEFEEREMVYLKIRPYRQVSMRKRRNEKLSAKYFGPYRILKRIGLVAYKLELPTS 112

Query: 61  STIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPEEVYGYSKNKPGSWDVLVQW 120
           +TIHPVFHVSQLK+A GE ++ +  VP LT NHE W  I +EVYGY KN  G W+VL+ W
Sbjct: 113 ATIHPVFHVSQLKRAFGECKDKQEVVPYLTMNHE-WLTIHDEVYGYHKNDKGEWEVLMSW 172

Query: 121 KGLPQHEATWELYEDLKQRFP 142
           KGLP+HEA  E Y+D +Q  P
Sbjct: 173 KGLPRHEAMKEPYDDFQQVIP 192

[Close]
BLAST of CSPI07G09970 vs. NCBI nr
Match: gi|659072240|ref|XP_008464306.1| (PREDICTED: uncharacterized protein LOC103502220 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 1.4e-37
Identity = 79/142 (55.63%), Postives = 100/142 (70.42%), Query Frame = 1 

Query: 2   KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENS 61
           KRR+V Y VGD V LKIRPY+Q+++RRKRNEKLS K FG YK++ +I  +AYKLELLE +
Sbjct: 60  KRRDVEYAVGDRVFLKIRPYRQLSLRRKRNEKLSAKYFGPYKILERIVPVAYKLELLEGT 119

Query: 62  TIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPEEVYGYSKNKPGSWDVLVQWK 121
            IHPVFHVSQLKK +GE+   +  V  L EN   W   P E   Y +NK   W+V++QW 
Sbjct: 120 LIHPVFHVSQLKKLVGEYINVQPTVQQLDENF-VWTTHPVETLDYRQNKAKEWEVMIQWD 179

Query: 122 GLPQHEATWELYEDLKQRFPDF 144
           GL  HEATWE Y D+  ++P+F
Sbjct: 180 GLSTHEATWEQYNDIADKYPNF 200

[Close]
BLAST of CSPI07G09970 vs. NCBI nr
Match: gi|659118736|ref|XP_008459277.1| (PREDICTED: uncharacterized protein LOC103498453 [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 7.0e-37
Identity = 76/142 (53.52%), Postives = 101/142 (71.13%), Query Frame = 1 

Query: 2   KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENS 61
           +RR+V Y+V DLV  KIRPY+Q+++RRKRNEKLS K FG YK++ +IG +AYKLEL E +
Sbjct: 60  RRRDVEYEVRDLVFFKIRPYRQLSLRRKRNEKLSAKYFGPYKILERIGPVAYKLELPEGT 119

Query: 62  TIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPEEVYGYSKNKPGSWDVLVQWK 121
            IHPVFHVSQLKK +GEH + +  V  L E+   W   P E   Y +NK G W+V+++W 
Sbjct: 120 LIHPVFHVSQLKKLVGEHIDIQPTVQQLDESF-VWTTHPVEALDYRQNKAGEWEVMIRWD 179

Query: 122 GLPQHEATWELYEDLKQRFPDF 144
           GL  HEATWE Y D+  ++ +F
Sbjct: 180 GLSSHEATWEQYADISGKYSNF 200

[Close]
BLAST of CSPI07G09970 vs. NCBI nr
Match: gi|778730254|ref|XP_011659739.1| (PREDICTED: uncharacterized protein LOC105436252 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 3.1e-32
Identity = 68/123 (55.28%), Postives = 91/123 (73.98%), Query Frame = 1 

Query: 1   MKRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLEN 60
           MKRR V ++ GD V LKIRPY+Q ++R+K NEKLSPK FG YK++ +IG + Y+LEL   
Sbjct: 262 MKRRHVEFE-GDKVFLKIRPYRQASLRKKTNEKLSPKYFGPYKIVKRIGPVTYRLELPTA 321

Query: 61  STIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPEEVYGYSKNKPGSWDVLVQW 120
           +T HPVFH+SQLK+A GE   +   +P LT NHE W+ + +EV+GY KN+ G W+VL+ W
Sbjct: 322 ATTHPVFHISQLKRAFGESANNDELLPFLTANHE-WKAVTQEVFGYQKNEKGGWEVLMSW 381

Query: 121 KGL 124
           KGL
Sbjct: 382 KGL 382

[Close]
BLAST of CSPI07G09970 vs. NCBI nr
Match: gi|923532994|ref|XP_013702372.1| (PREDICTED: soluble inorganic pyrophosphatase 1, chloroplastic-like [Brassica napus])

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-27
Identity = 66/143 (46.15%), Postives = 93/143 (65.03%), Query Frame = 1 

Query: 1   MKRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLEN 60
           +KRREV + VGD+VL+KIRPY+Q T+ ++ NEKLS + +G ++V+AK+G++AYKL+L E 
Sbjct: 22  IKRREVEFTVGDMVLVKIRPYRQRTLAKRINEKLSARFYGPFEVLAKVGRVAYKLKLPEG 81

Query: 61  STIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPEEVYGYSKNKPGSWDVLVQW 120
           + IHP FHVSQLKK +GE  E     P L+       +    +      K    +VLVQW
Sbjct: 82  TKIHPTFHVSQLKKMVGELVETVAIPPQLSSEGVLETEPAAVLKKRRNEKTQQEEVLVQW 141

Query: 121 KGLPQHEATWELYEDLKQRFPDF 144
           +GLP H+ TWE    +K +FP F
Sbjct: 142 EGLPAHDCTWEEVSVMKDQFPQF 164

The following BLAST results are available for this feature:
BLAST of CSPI07G09970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G09970 vs. TrEMBL
Match NameE-valueIdentityDescription
A5CAG1_VITVI3.0e-2645.14Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1[more]
B5U9W4_LOTJA8.6e-2644.29Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1[more]
B5U9W0_LOTJA8.6e-2644.29Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1[more]
B5U9W1_LOTJA8.6e-2644.29Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1[more]
B5U9V8_LOTJA8.6e-2644.29Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1[more]
BLAST of CSPI07G09970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G09970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131181|ref|XP_008465551.1|2.6e-3956.74PREDICTED: uncharacterized protein LOC103503179 [Cucumis melo][more]
gi|659072240|ref|XP_008464306.1|1.4e-3755.63PREDICTED: uncharacterized protein LOC103502220 [Cucumis melo][more]
gi|659118736|ref|XP_008459277.1|7.0e-3753.52PREDICTED: uncharacterized protein LOC103498453 [Cucumis melo][more]
gi|778730254|ref|XP_011659739.1|3.1e-3255.28PREDICTED: uncharacterized protein LOC105436252 [Cucumis sativus][more]
gi|923532994|ref|XP_013702372.1|1.3e-2746.15PREDICTED: soluble inorganic pyrophosphatase 1, chloroplastic-like [Brassica nap... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000953Chromo/chromo_shadow_dom
IPR016197Chromo-like_dom_sf
IPR023780Chromo_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G09970.1CSPI07G09970.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000953Chromo/chromo shadow domainPROFILEPS50013CHROMO_2coord: 98..144
score: 10
IPR016197Chromo domain-likeunknownSSF54160Chromo domain-likecoord: 61..140
score: 2.93
IPR023780Chromo domainPFAMPF00385Chromocoord: 99..142
score: 5.5
NoneNo IPR availableGENE3DG3DSA:2.40.50.40coord: 101..139
score: 4.
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 1..143
score: 9.8
NoneNo IPR availablePANTHERPTHR24559:SF186SUBFAMILY NOT NAMEDcoord: 1..143
score: 9.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G09970Cucumber (Chinese Long) v3cpicucB414
CSPI07G09970Watermelon (97103) v2cpiwmbB588
CSPI07G09970Wax gourdcpiwgoB705
CSPI07G09970Cucumber (Gy14) v1cgycpiB223
CSPI07G09970Cucurbita maxima (Rimu)cmacpiB040
CSPI07G09970Cucurbita maxima (Rimu)cmacpiB503
CSPI07G09970Cucurbita moschata (Rifu)cmocpiB030
CSPI07G09970Cucurbita moschata (Rifu)cmocpiB494
CSPI07G09970Cucumber (Chinese Long) v2cpicuB354
CSPI07G09970Melon (DHL92) v3.5.1cpimeB542
CSPI07G09970Watermelon (Charleston Gray)cpiwcgB545
CSPI07G09970Watermelon (97103) v1cpiwmB573
CSPI07G09970Cucurbita pepo (Zucchini)cpecpiB587
CSPI07G09970Cucurbita pepo (Zucchini)cpecpiB797
CSPI07G09970Bottle gourd (USVL1VR-Ls)cpilsiB524
CSPI07G09970Melon (DHL92) v3.6.1cpimedB527
CSPI07G09970Cucumber (Gy14) v2cgybcpiB331
CSPI07G09970Silver-seed gourdcarcpiB0919
CSPI07G09970Silver-seed gourdcarcpiB0943