CSPI07G09480 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G09480
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr7 : 7493456 .. 7494181 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAATTCGGTCTCGGCTTGGTTAGGACAAGCAAGATACTTCTTGGGTCTAGAATTATCAAGATCTGAACGAGGACTTATGCTCTCCCAAAGAAAATATTGTCTTCAAATCCTAGAAGATACTGGTTTTCTTGATTCTAAACCAGTTGTAGCACCTATGGATCCTAATCTGAAGCTATGTAAATTTGAAGGAGAACAAATAACTGAGGAAGACGCCACTTGCTATAGAAGATTAATTGGCAGATTGATATACTTACAAATATCCAGTCCTGATCTTTGCTTCTTTGTTCACCGCTTAAGCCAATTTTTGCACAAACCAACTAAACATCACCTAGATGCTGCTCATCACCTATTGAAGTACCTCAAAGGTTCCCCAGGACAAGGTGTTTTAATAAAACCTATTGATTCGTTTCACTTAAAAGCCTTCGTTGATGCTGATTGGGGATCGTGCTTTGACACTAGAAGATCGGTCACAGGGTTCTGTATCTTCCTAGGGGATTTCATCATCTCCTGGAAATCTAAGAAACAAGCAACCGTCTCAAGGTCCTCTGCAGAAGCTGAATATAGGGTCTTAGCATCAGTCACCAGTGAGCTAGTATGGATCACACAGCTGCTTACTGATTTTAAAGTAAAGACCTTGATGCCAACCACTGTTTTCTGTGATAATCAAGCAGTCATTGCTATTGCTTCGAATCCGACATTTCATGAAGGACAAAGCACATAG

mRNA sequence

ATGGATAATTCGGTCTCGGCTTGGTTAGGACAAGCAAGATACTTCTTGGGTCTAGAATTATCAAGATCTGAACGAGGACTTATGCTCTCCCAAAGAAAATATTGTCTTCAAATCCTAGAAGATACTGGTTTTCTTGATTCTAAACCAGTTGTAGCACCTATGGATCCTAATCTGAAGCTATGTAAATTTGAAGGAGAACAAATAACTGAGGAAGACGCCACTTGCTATAGAAGATTAATTGGCAGATTGATATACTTACAAATATCCAGTCCTGATCTTTGCTTCTTTGTTCACCGCTTAAGCCAATTTTTGCACAAACCAACTAAACATCACCTAGATGCTGCTCATCACCTATTGAAGTACCTCAAAGGTTCCCCAGGACAAGGTGTTTTAATAAAACCTATTGATTCGTTTCACTTAAAAGCCTTCGTTGATGCTGATTGGGGATCGTGCTTTGACACTAGAAGATCGGTCACAGGGTTCTGTATCTTCCTAGGGGATTTCATCATCTCCTGGAAATCTAAGAAACAAGCAACCGTCTCAAGGTCCTCTGCAGAAGCTGAATATAGGGTCTTAGCATCAGTCACCAGTGAGCTAGTATGGATCACACAGCTGCTTACTGATTTTAAAGTAAAGACCTTGATGCCAACCACTGTTTTCTGTGATAATCAAGCAGTCATTGCTATTGCTTCGAATCCGACATTTCATGAAGGACAAAGCACATAG

Coding sequence (CDS)

ATGGATAATTCGGTCTCGGCTTGGTTAGGACAAGCAAGATACTTCTTGGGTCTAGAATTATCAAGATCTGAACGAGGACTTATGCTCTCCCAAAGAAAATATTGTCTTCAAATCCTAGAAGATACTGGTTTTCTTGATTCTAAACCAGTTGTAGCACCTATGGATCCTAATCTGAAGCTATGTAAATTTGAAGGAGAACAAATAACTGAGGAAGACGCCACTTGCTATAGAAGATTAATTGGCAGATTGATATACTTACAAATATCCAGTCCTGATCTTTGCTTCTTTGTTCACCGCTTAAGCCAATTTTTGCACAAACCAACTAAACATCACCTAGATGCTGCTCATCACCTATTGAAGTACCTCAAAGGTTCCCCAGGACAAGGTGTTTTAATAAAACCTATTGATTCGTTTCACTTAAAAGCCTTCGTTGATGCTGATTGGGGATCGTGCTTTGACACTAGAAGATCGGTCACAGGGTTCTGTATCTTCCTAGGGGATTTCATCATCTCCTGGAAATCTAAGAAACAAGCAACCGTCTCAAGGTCCTCTGCAGAAGCTGAATATAGGGTCTTAGCATCAGTCACCAGTGAGCTAGTATGGATCACACAGCTGCTTACTGATTTTAAAGTAAAGACCTTGATGCCAACCACTGTTTTCTGTGATAATCAAGCAGTCATTGCTATTGCTTCGAATCCGACATTTCATGAAGGACAAAGCACATAG

Homology

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BLAST of CSPI07G09480 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.6e-38
Identity = 81/193 (41.97%), Postives = 112/193 (58.03%), Query Frame = 1


Query: 9   LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKFEGEQI 68
           LG   YFLG+++     GL LSQ KY  QIL + G LD KP+  P+   L       +  
Sbjct: 36  LGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKY- 95

Query: 69  TEEDATCYRRLIGRLIYLQISSPDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQ 128
              D + +R ++G L YL ++ PD+ + V+ + Q +H+PT    D    +L+Y+KG+   
Sbjct: 96  --PDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFH 155

Query: 129 GVLIKPIDSFHLKAFVDADWGSCFDTRRSVTGFCIFLGDFIISWKSKKQATVSRSSAEAE 188
           G+ I      +++AF D+DW  C  TRRS TGFC FLG  IISW +K+Q TVSRSS E E
Sbjct: 156 GLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETE 215

Query: 189 YRVLASVTSELVW 202
           YR LA   +EL W
Sbjct: 216 YRALALTAAELTW 225

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BLAST of CSPI07G09480 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 9.9e-28
Identity = 77/235 (32.77%), Postives = 119/235 (50.64%), Query Frame = 1


Query: 9    LGQARYFLGLEL--SRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKFEGE 68
            LG A+  LG+++   R+ R L LSQ KY  ++LE     ++KPV  P+  +LKL K    
Sbjct: 1038 LGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCP 1097

Query: 69   QITEEDATC----YRRLIGRLIYLQISS-PDLCFFVHRLSQFLHKPTKHHLDAAHHLLKY 128
               EE        Y   +G L+Y  + + PD+   V  +S+FL  P K H +A   +L+Y
Sbjct: 1098 TTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRY 1157

Query: 129  LKGSPGQGVLIKPIDSFHLKAFVDADWGSCFDTRRSVTGFCIFLGDFIISWKSKKQATVS 188
            L+G+ G  +     D   LK + DAD     D R+S TG+        ISW+SK Q  V+
Sbjct: 1158 LRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVA 1217

Query: 189  RSSAEAEYRVLASVTSELVWITQLLTDFKVKTLMPTTVFCDNQAVIAIASNPTFH 237
             S+ EAEY        E++W+ + L +  +       V+CD+Q+ I ++ N  +H
Sbjct: 1218 LSTTEAEYIAATETGKEMIWLKRFLQELGLHQ-KEYVVYCDSQSAIDLSKNSMYH 1270

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BLAST of CSPI07G09480 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-25
Identity = 74/233 (31.76%), Postives = 119/233 (51.07%), Query Frame = 1


Query: 9    LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKFEGEQI 68
            L + ++F+G+ +   E  + LSQ  Y  +IL      +   V  P+   +    +E    
Sbjct: 1117 LNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKIN---YELLNS 1176

Query: 69   TEEDATCYRRLIGRLIYLQISS-PDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPG 128
             E+  T  R LIG L+Y+ + + PDL   V+ LS++  K           +L+YLKG+  
Sbjct: 1177 DEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTID 1236

Query: 129  QGVLIKPIDSFHLK--AFVDADWGSCFDTRRSVTGFCIFLGDF-IISWKSKKQATVSRSS 188
              ++ K   +F  K   +VD+DW      R+S TG+   + DF +I W +K+Q +V+ SS
Sbjct: 1237 MKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASS 1296

Query: 189  AEAEYRVLASVTSELVWITQLLTDFKVKTLMPTTVFCDNQAVIAIASNPTFHE 238
             EAEY  L     E +W+  LLT   +K   P  ++ DNQ  I+IA+NP+ H+
Sbjct: 1297 TEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHK 1346

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BLAST of CSPI07G09480 vs. Swiss-Prot
Match: M240_ARATH (Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana GN=AtMg00240 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.7e-16
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 1


Query: 84  IYLQISSPDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQGVLIKPIDSFHLKAF 143
           +YL I+ PDL F V+RLSQF        + A + +L Y+KG+ GQG+         LKAF
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 144 VDADWGSCFDTRRSVTGFC 163
            D+DW SC DTRRSVTGFC
Sbjct: 61  ADSDWASCPDTRRSVTGFC 79

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BLAST of CSPI07G09480 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 5.3e-13
Identity = 56/204 (27.45%), Postives = 91/204 (44.61%), Query Frame = 1


Query: 9   LGQARYFLGLELSRSERG-LMLSQRKYCLQI----------LEDTGFLDSKPVVAPMDPN 68
           LG+   FLGL + +S  G + LS + Y  +           L  T   +SKP+     P+
Sbjct: 117 LGKVDKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPH 176

Query: 69  LKLCKFEGEQITEEDATCYRRLIGRLIYL-QISSPDLCFFVHRLSQFLHKPTKHHLDAAH 128
           LK            D T Y+ ++G+L++      PD+ + V  LS+FL +P   HL++A 
Sbjct: 177 LK------------DITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESAR 236

Query: 129 HLLKYLKGSPGQGVLIKPIDSFHLKAFVDADWGSCFDTRRSVTGFCIFLGDFIISWKSKK 188
            +L+YL  +    +  +      L  + DA  G+  D   S  G+   L    ++W SKK
Sbjct: 237 RVLRYLYTTRSMCLKYRSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKK 296

Query: 189 -QATVSRSSAEAEYRVLASVTSEL 200
            +  +   S EAEY   +    E+
Sbjct: 297 LKGVIPVPSTEAEYITASETVMEI 308

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BLAST of CSPI07G09480 vs. TrEMBL
Match: A0A151SS25_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_003891 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.4e-68
Identity = 125/229 (54.59%), Postives = 168/229 (73.36%), Query Frame = 1


Query: 9   LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKFEGEQI 68
           +G  +YFLGLE+++S +G+ L QRKY +Q+LEDTGF ++KP V PMDPN      +GE +
Sbjct: 102 VGDLKYFLGLEIAKSNQGIHLCQRKYTIQLLEDTGFSNAKPAVVPMDPNQHFNSTDGEPL 161

Query: 69  TEEDATCYRRLIGRLIYLQISSPDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQ 128
             +D + YRRL+GRL+Y+ IS PD+CF V++LSQF+  P   HL   H +L+YLK +PGQ
Sbjct: 162 --QDPSAYRRLLGRLMYISISRPDVCFAVNKLSQFMSHPRTPHLQVVHQVLRYLKATPGQ 221

Query: 129 GVLIKPIDSFHLKAFVDADWGSCFDTRRSVTGFCIFLGDFIISWKSKKQATVSRSSAEAE 188
           G+       F L A+VDADWGSC D+RRS TGFCIF+GD +++WKSKKQATVSRSSAEAE
Sbjct: 222 GIFFSSQSKFTLSAYVDADWGSCVDSRRSTTGFCIFMGDSLLTWKSKKQATVSRSSAEAE 281

Query: 189 YRVLASVTSELVWITQLLTDFKVKTLMPTTVFCDNQAVIAIASNPTFHE 238
           YR +AS+TSEL+W+ QLL  F+ +  M   V CDN + I +++NP  H+
Sbjct: 282 YRAIASITSELLWLKQLLRFFQTQPQM-VMVLCDNISAIYLSTNPISHQ 327

[Close]

BLAST of CSPI07G09480 vs. TrEMBL
Match: A0A151RF45_CAJCA (Copia protein OS=Cajanus cajan GN=KK1_037356 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 3.1e-68
Identity = 130/229 (56.77%), Postives = 168/229 (73.36%), Query Frame = 1


Query: 9   LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKFEGEQI 68
           LG  ++FLGLELS+S+ G+ L QR Y L ILED+G L  KP   PM+ NLKL    G ++
Sbjct: 106 LGDLKFFLGLELSKSQEGIYLCQRHYALAILEDSGMLACKPSAIPMEANLKLHAESGTKL 165

Query: 69  TEEDATCYRRLIGRLIYLQISSPDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQ 128
             +D + YRRLIGRL+YL IS PD+C+ VH+LSQF+  P   H++AA  LL+YLK + GQ
Sbjct: 166 --QDPSIYRRLIGRLLYLTISRPDICYAVHKLSQFVSNPHTDHMNAATLLLRYLKHTAGQ 225

Query: 129 GVLIKPIDSFHLKAFVDADWGSCFDTRRSVTGFCIFLGDFIISWKSKKQATVSRSSAEAE 188
           G+L K      L A+VDADWG+C D+RRS TGFC+FLG+ ++SWK+K+Q TVS+SSAEAE
Sbjct: 226 GILFKANSDTRLHAYVDADWGTCSDSRRSTTGFCVFLGNSLVSWKAKRQTTVSKSSAEAE 285

Query: 189 YRVLASVTSELVWITQLLTDFKVKTLMPTTVFCDNQAVIAIASNPTFHE 238
           Y+ LASV SE++W+  LLTDF+V T     V+CDN+A I IASNP FHE
Sbjct: 286 YQALASVASEIIWLKNLLTDFQVST-THAAVYCDNKAAIHIASNPIFHE 331

[Close]

BLAST of CSPI07G09480 vs. TrEMBL
Match: A0A151RL60_CAJCA (Copia protein OS=Cajanus cajan GN=KK1_035264 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 3.1e-68
Identity = 130/229 (56.77%), Postives = 168/229 (73.36%), Query Frame = 1


Query: 9   LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKFEGEQI 68
           LG  ++FLGLELS+S+ G+ L QR Y L ILED+G L  KP   PM+ NLKL    G ++
Sbjct: 18  LGDLKFFLGLELSKSQEGIYLCQRHYALAILEDSGMLACKPSAIPMEANLKLHAESGTKL 77

Query: 69  TEEDATCYRRLIGRLIYLQISSPDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQ 128
             +D + YRRLIGRL+YL IS PD+C+ VH+LSQF+  P   H++AA  LL+YLK + GQ
Sbjct: 78  --QDPSIYRRLIGRLLYLTISRPDICYAVHKLSQFVSNPHTDHMNAATLLLRYLKHTAGQ 137

Query: 129 GVLIKPIDSFHLKAFVDADWGSCFDTRRSVTGFCIFLGDFIISWKSKKQATVSRSSAEAE 188
           G+L K      L A+VDADWG+C D+RRS TGFC+FLG+ ++SWK+K+Q TVS+SSAEAE
Sbjct: 138 GILFKANSDTRLHAYVDADWGTCSDSRRSTTGFCVFLGNSLVSWKAKRQTTVSKSSAEAE 197

Query: 189 YRVLASVTSELVWITQLLTDFKVKTLMPTTVFCDNQAVIAIASNPTFHE 238
           Y+ LASV SE++W+  LLTDF+V T     V+CDN+A I IASNP FHE
Sbjct: 198 YQALASVASEIIWLKNLLTDFQVST-THAAVYCDNKAAIHIASNPIFHE 243

[Close]

BLAST of CSPI07G09480 vs. TrEMBL
Match: A0A151TGK8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_012475 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 4.0e-68
Identity = 132/229 (57.64%), Postives = 167/229 (72.93%), Query Frame = 1


Query: 9   LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKFEGEQI 68
           LG  ++FLGLELS+S+ G+ L QR Y L ILED+G L  KP   PM+ NLKL    G ++
Sbjct: 207 LGDLKFFLGLELSKSQEGIYLCQRHYALAILEDSGMLACKPSAIPMEANLKLHAESGTKL 266

Query: 69  TEEDATCYRRLIGRLIYLQISSPDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQ 128
             +D + YRRLIGRL+YL IS PD+C+ VH+LSQF+  P   H++AA  LL+YLK + GQ
Sbjct: 267 --QDPSIYRRLIGRLLYLTISRPDICYAVHKLSQFVSNPHTDHMNAATLLLRYLKHTAGQ 326

Query: 129 GVLIKPIDSFHLKAFVDADWGSCFDTRRSVTGFCIFLGDFIISWKSKKQATVSRSSAEAE 188
           G+L K      L A+VDADWG+C D+RRS TGFC+FLG+ ++SWK K+Q TVSRSSAEAE
Sbjct: 327 GILFKANSDTRLHAYVDADWGTCSDSRRSTTGFCVFLGNSLVSWKVKRQKTVSRSSAEAE 386

Query: 189 YRVLASVTSELVWITQLLTDFKVKTLMPTTVFCDNQAVIAIASNPTFHE 238
           YR LASV SE++W+  LLTDF+V T     V+CDN+A I IASNP FHE
Sbjct: 387 YRSLASVASEIIWLKNLLTDFQV-TTTHAAVYCDNKAAIHIASNPIFHE 432

[Close]

BLAST of CSPI07G09480 vs. TrEMBL
Match: A0A151SCL0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_025636 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.4e-67
Identity = 126/229 (55.02%), Postives = 167/229 (72.93%), Query Frame = 1


Query: 9   LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKFEGEQI 68
           LG  ++FLGLELS+S+ G+ + QR Y + ILED G L  KP   PM+ NLKL    G ++
Sbjct: 104 LGDLKFFLGLELSKSKEGIFMCQRHYTMSILEDCGMLGCKPSSIPMESNLKLTTESGTKL 163

Query: 69  TEEDATCYRRLIGRLIYLQISSPDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQ 128
            + +   YRRLIGRL+YL IS PD+CF VH+LSQF+  P   H++A + LL+YLK + GQ
Sbjct: 164 LDPEK--YRRLIGRLLYLTISRPDICFTVHKLSQFVSNPYTDHMNATNMLLRYLKHTAGQ 223

Query: 129 GVLIKPIDSFHLKAFVDADWGSCFDTRRSVTGFCIFLGDFIISWKSKKQATVSRSSAEAE 188
           G+L K      L A+VDADWGSC D+R+S TGFC+FLG+ ++SWKSK+Q TVS+SSAEAE
Sbjct: 224 GILFKANSDTRLHAYVDADWGSCQDSRKSTTGFCVFLGNSLVSWKSKRQQTVSKSSAEAE 283

Query: 189 YRVLASVTSELVWITQLLTDFKVKTLMPTTVFCDNQAVIAIASNPTFHE 238
           YR ++SV+SE+ W+  LLTDF + T    +V+CDN+A I I+SNPTFHE
Sbjct: 284 YRAISSVSSEITWLRNLLTDFNINTPF-ASVYCDNKAAIHISSNPTFHE 329

[Close]

BLAST of CSPI07G09480 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 222.2 bits (565), Expect = 3.4e-58
Identity = 111/229 (48.47%), Postives = 145/229 (63.32%), Query Frame = 1


Query: 9   LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKFEGEQI 68
           LG  +YFLGLE++RS  G+ + QRKY L +L++TG L  KP   PMDP++      G   
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF 372

Query: 69  TEEDATCYRRLIGRLIYLQISSPDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQ 128
              DA  YRRLIGRL+YLQI+  D+ F V++LSQF   P   H  A   +L Y+KG+ GQ
Sbjct: 373 V--DAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQ 432

Query: 129 GVLIKPIDSFHLKAFVDADWGSCFDTRRSVTGFCIFLGDFIISWKSKKQATVSRSSAEAE 188
           G+         L+ F DA + SC DTRRS  G+C+FLG  +ISWKSKKQ  VS+SSAEAE
Sbjct: 433 GLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAE 492

Query: 189 YRVLASVTSELVWITQLLTDFKVKTLMPTTVFCDNQAVIAIASNPTFHE 238
           YR L+  T E++W+ Q   + ++    PT +FCDN A I IA+N  FHE
Sbjct: 493 YRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHE 539

[Close]

BLAST of CSPI07G09480 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-39
Identity = 81/193 (41.97%), Postives = 112/193 (58.03%), Query Frame = 1


Query: 9   LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKFEGEQI 68
           LG   YFLG+++     GL LSQ KY  QIL + G LD KP+  P+   L       +  
Sbjct: 36  LGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKY- 95

Query: 69  TEEDATCYRRLIGRLIYLQISSPDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQ 128
              D + +R ++G L YL ++ PD+ + V+ + Q +H+PT    D    +L+Y+KG+   
Sbjct: 96  --PDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFH 155

Query: 129 GVLIKPIDSFHLKAFVDADWGSCFDTRRSVTGFCIFLGDFIISWKSKKQATVSRSSAEAE 188
           G+ I      +++AF D+DW  C  TRRS TGFC FLG  IISW +K+Q TVSRSS E E
Sbjct: 156 GLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETE 215

Query: 189 YRVLASVTSELVW 202
           YR LA   +EL W
Sbjct: 216 YRALALTAAELTW 225

[Close]

BLAST of CSPI07G09480 vs. TAIR10
Match: ATMG00240.1 (ATMG00240.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 85.5 bits (210), Expect = 4.9e-17
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 1


Query: 84  IYLQISSPDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQGVLIKPIDSFHLKAF 143
           +YL I+ PDL F V+RLSQF        + A + +L Y+KG+ GQG+         LKAF
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 144 VDADWGSCFDTRRSVTGFC 163
            D+DW SC DTRRSVTGFC
Sbjct: 61  ADSDWASCPDTRRSVTGFC 79

[Close]

BLAST of CSPI07G09480 vs. NCBI nr
Match: gi|694351566|ref|XP_009357571.1| (PREDICTED: uncharacterized protein LOC103948287 [Pyrus x bretschneideri])

HSP 1 Score: 271.6 bits (693), Expect = 1.4e-69
Identity = 130/229 (56.77%), Postives = 169/229 (73.80%), Query Frame = 1


Query: 9   LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKFEGEQI 68
           +GQ +YFLGLE++RS+ G+ LSQRKY L+ILEDTGFL +KP   P+D N+ L + +G  +
Sbjct: 660 MGQLKYFLGLEVARSKHGIALSQRKYALEILEDTGFLGAKPSRFPVDQNITLTQGDGRLL 719

Query: 69  TEEDATCYRRLIGRLIYLQISSPDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQ 128
              DA+ YRRL+GRLIYL I+ PDL + VH LSQF+ KP + HLDAAH +L+YLK +PGQ
Sbjct: 720 A--DASQYRRLVGRLIYLTITRPDLVYAVHILSQFMDKPRQPHLDAAHKVLRYLKQTPGQ 779

Query: 129 GVLIKPIDSFHLKAFVDADWGSCFDTRRSVTGFCIFLGDFIISWKSKKQATVSRSSAEAE 188
           G+ +    S  L+A+ DADW  C D RRS+TG+CIFLG   ISWK+KKQ+TVSRSSAEAE
Sbjct: 780 GIFLPSKGSLELRAYCDADWARCKDNRRSITGYCIFLGHAPISWKTKKQSTVSRSSAEAE 839

Query: 189 YRVLASVTSELVWITQLLTDFKVKTLMPTTVFCDNQAVIAIASNPTFHE 238
           YR +A+   E+ W+  +L D  ++ L P  +FCDN+A I IASNP FHE
Sbjct: 840 YRSMATACCEITWLQYILKDLNIQHLQPVKLFCDNKAAIHIASNPVFHE 886

[Close]

BLAST of CSPI07G09480 vs. NCBI nr
Match: gi|1012346434|gb|KYP57626.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 267.7 bits (683), Expect = 2.0e-68
Identity = 125/229 (54.59%), Postives = 168/229 (73.36%), Query Frame = 1


Query: 9   LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKFEGEQI 68
           +G  +YFLGLE+++S +G+ L QRKY +Q+LEDTGF ++KP V PMDPN      +GE +
Sbjct: 102 VGDLKYFLGLEIAKSNQGIHLCQRKYTIQLLEDTGFSNAKPAVVPMDPNQHFNSTDGEPL 161

Query: 69  TEEDATCYRRLIGRLIYLQISSPDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQ 128
             +D + YRRL+GRL+Y+ IS PD+CF V++LSQF+  P   HL   H +L+YLK +PGQ
Sbjct: 162 --QDPSAYRRLLGRLMYISISRPDVCFAVNKLSQFMSHPRTPHLQVVHQVLRYLKATPGQ 221

Query: 129 GVLIKPIDSFHLKAFVDADWGSCFDTRRSVTGFCIFLGDFIISWKSKKQATVSRSSAEAE 188
           G+       F L A+VDADWGSC D+RRS TGFCIF+GD +++WKSKKQATVSRSSAEAE
Sbjct: 222 GIFFSSQSKFTLSAYVDADWGSCVDSRRSTTGFCIFMGDSLLTWKSKKQATVSRSSAEAE 281

Query: 189 YRVLASVTSELVWITQLLTDFKVKTLMPTTVFCDNQAVIAIASNPTFHE 238
           YR +AS+TSEL+W+ QLL  F+ +  M   V CDN + I +++NP  H+
Sbjct: 282 YRAIASITSELLWLKQLLRFFQTQPQM-VMVLCDNISAIYLSTNPISHQ 327

[Close]

BLAST of CSPI07G09480 vs. NCBI nr
Match: gi|923854029|ref|XP_013704406.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Brassica napus])

HSP 1 Score: 266.5 bits (680), Expect = 4.4e-68
Identity = 127/229 (55.46%), Postives = 160/229 (69.87%), Query Frame = 1


Query: 9   LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKFEGEQI 68
           LGQAR+FLGLE++R+  G+ +SQRKY L +L DTGFL SKP   P+DPN+ L    G  +
Sbjct: 141 LGQARFFLGLEIARNSTGISVSQRKYALDLLADTGFLASKPCAVPLDPNVALSATTGVPL 200

Query: 69  TEEDATCYRRLIGRLIYLQISSPDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQ 128
            E  +T YR LIGRL+YL I+ PD+ F VH LSQFL  PT  HL  AHH+L+YLK SPGQ
Sbjct: 201 PE--STSYRELIGRLLYLTITRPDITFAVHHLSQFLSAPTDAHLKVAHHVLRYLKSSPGQ 260

Query: 129 GVLIKPIDSFHLKAFVDADWGSCFDTRRSVTGFCIFLGDFIISWKSKKQATVSRSSAEAE 188
           G+         L AF DADW +C DTRRSVTGFC++LG  +ISWKSK Q TVSRSS EAE
Sbjct: 261 GLFYAVDSDLCLNAFPDADWATCLDTRRSVTGFCVYLGQSLISWKSKIQHTVSRSSTEAE 320

Query: 189 YRVLASVTSELVWITQLLTDFKVKTLMPTTVFCDNQAVIAIASNPTFHE 238
           Y ++A    E++W+ QLL D K+    P  +FCDN++ + IA+NP FH+
Sbjct: 321 YHIMALTRCEMLWLQQLLNDMKITVTAPAKLFCDNKSAMHIATNPVFHK 367

[Close]

BLAST of CSPI07G09480 vs. NCBI nr
Match: gi|1012331852|gb|KYP43307.1| (Copia protein [Cajanus cajan])

HSP 1 Score: 266.5 bits (680), Expect = 4.4e-68
Identity = 130/229 (56.77%), Postives = 168/229 (73.36%), Query Frame = 1


Query: 9   LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKFEGEQI 68
           LG  ++FLGLELS+S+ G+ L QR Y L ILED+G L  KP   PM+ NLKL    G ++
Sbjct: 18  LGDLKFFLGLELSKSQEGIYLCQRHYALAILEDSGMLACKPSAIPMEANLKLHAESGTKL 77

Query: 69  TEEDATCYRRLIGRLIYLQISSPDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQ 128
             +D + YRRLIGRL+YL IS PD+C+ VH+LSQF+  P   H++AA  LL+YLK + GQ
Sbjct: 78  --QDPSIYRRLIGRLLYLTISRPDICYAVHKLSQFVSNPHTDHMNAATLLLRYLKHTAGQ 137

Query: 129 GVLIKPIDSFHLKAFVDADWGSCFDTRRSVTGFCIFLGDFIISWKSKKQATVSRSSAEAE 188
           G+L K      L A+VDADWG+C D+RRS TGFC+FLG+ ++SWK+K+Q TVS+SSAEAE
Sbjct: 138 GILFKANSDTRLHAYVDADWGTCSDSRRSTTGFCVFLGNSLVSWKAKRQTTVSKSSAEAE 197

Query: 189 YRVLASVTSELVWITQLLTDFKVKTLMPTTVFCDNQAVIAIASNPTFHE 238
           Y+ LASV SE++W+  LLTDF+V T     V+CDN+A I IASNP FHE
Sbjct: 198 YQALASVASEIIWLKNLLTDFQVST-THAAVYCDNKAAIHIASNPIFHE 243

[Close]

BLAST of CSPI07G09480 vs. NCBI nr
Match: gi|1012329698|gb|KYP41264.1| (Copia protein [Cajanus cajan])

HSP 1 Score: 266.5 bits (680), Expect = 4.4e-68
Identity = 130/229 (56.77%), Postives = 168/229 (73.36%), Query Frame = 1


Query: 9   LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKFEGEQI 68
           LG  ++FLGLELS+S+ G+ L QR Y L ILED+G L  KP   PM+ NLKL    G ++
Sbjct: 106 LGDLKFFLGLELSKSQEGIYLCQRHYALAILEDSGMLACKPSAIPMEANLKLHAESGTKL 165

Query: 69  TEEDATCYRRLIGRLIYLQISSPDLCFFVHRLSQFLHKPTKHHLDAAHHLLKYLKGSPGQ 128
             +D + YRRLIGRL+YL IS PD+C+ VH+LSQF+  P   H++AA  LL+YLK + GQ
Sbjct: 166 --QDPSIYRRLIGRLLYLTISRPDICYAVHKLSQFVSNPHTDHMNAATLLLRYLKHTAGQ 225

Query: 129 GVLIKPIDSFHLKAFVDADWGSCFDTRRSVTGFCIFLGDFIISWKSKKQATVSRSSAEAE 188
           G+L K      L A+VDADWG+C D+RRS TGFC+FLG+ ++SWK+K+Q TVS+SSAEAE
Sbjct: 226 GILFKANSDTRLHAYVDADWGTCSDSRRSTTGFCVFLGNSLVSWKAKRQTTVSKSSAEAE 285

Query: 189 YRVLASVTSELVWITQLLTDFKVKTLMPTTVFCDNQAVIAIASNPTFHE 238
           Y+ LASV SE++W+  LLTDF+V T     V+CDN+A I IASNP FHE
Sbjct: 286 YQALASVASEIIWLKNLLTDFQVST-THAAVYCDNKAAIHIASNPIFHE 331

The following BLAST results are available for this feature:

BLAST of CSPI07G09480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
M810_ARATH	3.6e-38	41.97	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0...	[more]
POLX_TOBAC	9.9e-28	32.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	2.1e-25	31.76	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
M240_ARATH	8.7e-16	50.63	Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana GN=AtMg0...	[more]
YCH4_YEAST	5.3e-13	27.45	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of CSPI07G09480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151SS25_CAJCA	1.4e-68	54.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151RF45_CAJCA	3.1e-68	56.77	Copia protein OS=Cajanus cajan GN=KK1_037356 PE=4 SV=1	[more]
A0A151RL60_CAJCA	3.1e-68	56.77	Copia protein OS=Cajanus cajan GN=KK1_035264 PE=4 SV=1	[more]
A0A151TGK8_CAJCA	4.0e-68	57.64	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151SCL0_CAJCA	3.4e-67	55.02	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of CSPI07G09480 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	3.4e-58	48.47	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.0e-39	41.97	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	4.9e-17	50.63	ATMG00240.1 Gag-Pol-related retrotransposon family protein	[more]

BLAST of CSPI07G09480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|694351566\|ref\|XP_009357571.1\|	1.4e-69	56.77	PREDICTED: uncharacterized protein LOC103948287 [Pyrus x bretschneideri]	[more]
gi\|1012346434\|gb\|KYP57626.1\|	2.0e-68	54.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|923854029\|ref\|XP_013704406.1\|	4.4e-68	55.46	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Brassica napus]	[more]
gi\|1012331852\|gb\|KYP43307.1\|	4.4e-68	56.77	Copia protein [Cajanus cajan]	[more]
gi\|1012329698\|gb\|KYP41264.1\|	4.4e-68	56.77	Copia protein [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005488	binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G09480.1	CSPI07G09480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 9..55 score: 3.
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 9..216 score: 1.5
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 9..216 score: 1.5
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 10..34 score: 4.22E-12coord: 66..237 score: 4.22

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G09480	CmaCh01G009360	Cucurbita maxima (Rimu)	cmacpiB497

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G09480	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G09480	Melon (DHL92) v3.5.1	cpimeB542
CSPI07G09480	Melon (DHL92) v3.6.1	cpimedB527
CSPI07G09480	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G09480	Cucumber (Chinese Long) v3	cpicucB414