CSPI07G08620 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G08620
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
Location	Chr7 : 6446704 .. 6447250 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGGTTCTGTAATAGCGATGAGAACAGTGATGTTATTACCGACTATGATTATCTAACAGTTCGAGTACCGTTGATATAGTTGAGGCTCAATCAAAATATGGTTTTTGGGGTTGGAATTTGTGGCGTCAACCTATAGGGTTTGTTATTTTTCTAATTTCTTCCTTAGCAGAATGCGAGAGATTACCTTTTGATTTACCAGAAGCAGAAGAAGAATTAGTAGCGGGTTATCAAACTGAGTATTCGGGTATAAAATTTGGTTTATTTTATGTTGCTTCCTATCTAAATCTATTAGTTTCTTCGTTATTTGTAACTGTTCTTTACTTGGGTGGTTGGGATATCTCTATTCCATACATATTAGGTTATGAACTTTTTGAAATAAATAAAGTGTATGAAGTCTTTGGAATGACAATTAGTATCTTTATTACATTAGCGAAAACTTATTTGTTCTTGTTCATTTCTATAGCAACAAGATGGACTTTACCCCGACTAAGAATAGATCAACTCGGCAATTCATGGAAAGATGAATCGAGGAAAAACTTATGA

mRNA sequence

ATGTACGGTTCTGTAATAGCGATGAGAACAGTGATTTCGAGTACCGTTGATATAGTTGAGGCTCAATCAAAATATGAATGCGAGAGATTACCTTTTGATTTACCAGAAGCAGAAGAAGAATTAGTAGCGGGTTATCAAACTGAGTATTCGGCAACAAGATGGACTTTACCCCGACTAAGAATAGATCAACTCGGCAATTCATGGAAAGATGAATCGAGGAAAAACTTATGA

Coding sequence (CDS)

ATGTACGGTTCTGTAATAGCGATGAGAACAGTGATTTCGAGTACCGTTGATATAGTTGAGGCTCAATCAAAATATGAATGCGAGAGATTACCTTTTGATTTACCAGAAGCAGAAGAAGAATTAGTAGCGGGTTATCAAACTGAGTATTCGGCAACAAGATGGACTTTACCCCGACTAAGAATAGATCAACTCGGCAATTCATGGAAAGATGAATCGAGGAAAAACTTATGA

Homology

[Close]

BLAST of CSPI07G08620 vs. Swiss-Prot
Match: NU1C_SORBI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Sorghum bicolor GN=ndhA PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.6e-11
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 57
           I++ +  SSTVDIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 181 ISLLSNSSSTVDIVEAQSKYGFFGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELV 240

[Close]

BLAST of CSPI07G08620 vs. Swiss-Prot
Match: NU1C_AGRST (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Agrostis stolonifera GN=ndhA PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.6e-11
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 57
           I++ +  SSTVDIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 181 ISLLSNSSSTVDIVEAQSKYGFFGWNIWRQPIGFLVFLISSLAECERLPFDLPEAEEELV 240

[Close]

BLAST of CSPI07G08620 vs. Swiss-Prot
Match: NU1C_CALFG (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Calycanthus floridus var. glaucus GN=ndhA PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.0e-11
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 57
           I++ +  SSTVDIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 182 ISLLSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELV 241

[Close]

BLAST of CSPI07G08620 vs. Swiss-Prot
Match: NU1C_POPAL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus alba GN=ndhA PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.0e-11
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 57
           I++ +  SSTVDIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 182 ISLLSNSSSTVDIVEAQSKYGFGGWNLWRQPIGFIIFFISSLAECERLPFDLPEAEEELV 241

[Close]

BLAST of CSPI07G08620 vs. Swiss-Prot
Match: NU1C_LACSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lactuca sativa GN=ndhA PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.0e-11
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 57
           I++ +  SSTVDIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 182 ISLLSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELV 241

[Close]

BLAST of CSPI07G08620 vs. TrEMBL
Match: A0A124SAL1_CYNCS (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_024865 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-12
Identity = 45/79 (56.96%), Postives = 49/79 (62.03%), Query Frame = 1


Query: 1  MYGSVIAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEA 57
          MYGSVI M TVI ST+DIVEAQSKY                       ECERLPFDLPEA
Sbjct: 1  MYGSVIGMGTVILSTIDIVEAQSKYAFWGWNLWRQLIGFFVFLISSLAECERLPFDLPEA 60

[Close]

BLAST of CSPI07G08620 vs. TrEMBL
Match: A0A096XAW4_9ROSI (NADH-quinone oxidoreductase subunit H OS=Erodium manescavi GN=ndhA PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-09
Identity = 42/76 (55.26%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 4   SVIAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEE 57
           S+ A+R+  SSTVDIVEAQSKY                       ECERLPFDLPEAEEE
Sbjct: 183 SLRAIRSNSSSTVDIVEAQSKYGFWGWNFWRQPIGFIVLLISSLAECERLPFDLPEAEEE 242

[Close]

BLAST of CSPI07G08620 vs. TrEMBL
Match: A0A096XAN7_9ROSI (NADH-quinone oxidoreductase subunit H OS=Erodium rupestre GN=ndhA PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-09
Identity = 42/76 (55.26%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 4   SVIAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEE 57
           S+ A+R+  SSTVDIVEAQSKY                       ECERLPFDLPEAEEE
Sbjct: 183 SLRAIRSNSSSTVDIVEAQSKYGFLGWNFWRQPIGFIVLLISSLAECERLPFDLPEAEEE 242

[Close]

BLAST of CSPI07G08620 vs. TrEMBL
Match: A0A096XCS1_9ROSI (NADH-quinone oxidoreductase subunit H OS=Erodium foetidum subsp. foetidum GN=ndhA PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-09
Identity = 42/76 (55.26%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 4   SVIAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEE 57
           S+ A+R+  SSTVDIVEAQSKY                       ECERLPFDLPEAEEE
Sbjct: 183 SLRAIRSNSSSTVDIVEAQSKYGFLGWNFWRQPIGFIVLLISSLAECERLPFDLPEAEEE 242

[Close]

BLAST of CSPI07G08620 vs. TrEMBL
Match: A0A0H3W322_FRAVE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Fragaria vesca subsp. bracteata GN=ndhA PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-09
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 57
           I++R   SST+DIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 179 ISLRANSSSTIDIVEAQSKYGFGGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELV 238

[Close]

BLAST of CSPI07G08620 vs. TAIR10
Match: ATCG01100.1 (ATCG01100.1 NADH dehydrogenase family protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-11
Identity = 37/66 (56.06%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 14  STVDIVEAQSKY-----------------------ECERLPFDLPEAEEELVAGYQTEYS 57
           STVDIVEAQSKY                       ECERLPFDLPEAEEEL+AGYQTEYS
Sbjct: 190 STVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQTEYS 249

[Close]

BLAST of CSPI07G08620 vs. NCBI nr
Match: gi|976899192|gb|KVH87822.1| (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-12
Identity = 45/79 (56.96%), Postives = 49/79 (62.03%), Query Frame = 1


Query: 1  MYGSVIAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEA 57
          MYGSVI M TVI ST+DIVEAQSKY                       ECERLPFDLPEA
Sbjct: 1  MYGSVIGMGTVILSTIDIVEAQSKYAFWGWNLWRQLIGFFVFLISSLAECERLPFDLPEA 60

[Close]

BLAST of CSPI07G08620 vs. NCBI nr
Match: gi|571031480|gb|AHF21124.1| (NADH-plastoquinone oxidoreductase subunit 1 [Erodium rupestre])

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-09
Identity = 42/76 (55.26%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 4   SVIAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEE 57
           S+ A+R+  SSTVDIVEAQSKY                       ECERLPFDLPEAEEE
Sbjct: 183 SLRAIRSNSSSTVDIVEAQSKYGFLGWNFWRQPIGFIVLLISSLAECERLPFDLPEAEEE 242

[Close]

BLAST of CSPI07G08620 vs. NCBI nr
Match: gi|571031556|gb|AHF21199.1| (NADH-plastoquinone oxidoreductase subunit 1 [Erodium manescavi])

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-09
Identity = 42/76 (55.26%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 4   SVIAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEE 57
           S+ A+R+  SSTVDIVEAQSKY                       ECERLPFDLPEAEEE
Sbjct: 183 SLRAIRSNSSSTVDIVEAQSKYGFWGWNFWRQPIGFIVLLISSLAECERLPFDLPEAEEE 242

[Close]

BLAST of CSPI07G08620 vs. NCBI nr
Match: gi|574450476|gb|AHG24660.1| (NADH-plastoquinone oxidoreductase subunit 1 [Erodium foetidum subsp. foetidum])

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-09
Identity = 42/76 (55.26%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 4   SVIAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEE 57
           S+ A+R+  SSTVDIVEAQSKY                       ECERLPFDLPEAEEE
Sbjct: 183 SLRAIRSNSSSTVDIVEAQSKYGFLGWNFWRQPIGFIVLLISSLAECERLPFDLPEAEEE 242

[Close]

BLAST of CSPI07G08620 vs. NCBI nr
Match: gi|823334190|gb|AKI31042.1| (NADH dehydrogenase subunit 1 (chloroplast) [Fragaria vesca subsp. bracteata])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 57
           I++R   SST+DIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 179 ISLRANSSSTIDIVEAQSKYGFGGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELV 238

The following BLAST results are available for this feature:

BLAST of CSPI07G08620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NU1C_SORBI	4.6e-11	54.05	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Sorghum bicolor GN=nd...	[more]
NU1C_AGRST	4.6e-11	54.05	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Agrostis stolonifera ...	[more]
NU1C_CALFG	6.0e-11	54.05	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Calycanthus floridus ...	[more]
NU1C_POPAL	6.0e-11	54.05	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus alba GN=ndhA ...	[more]
NU1C_LACSA	6.0e-11	54.05	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lactuca sativa GN=ndh...	[more]

BLAST of CSPI07G08620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A124SAL1_CYNCS	2.9e-12	56.96	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H (Fragm...	[more]
A0A096XAW4_9ROSI	1.3e-09	55.26	NADH-quinone oxidoreductase subunit H OS=Erodium manescavi GN=ndhA PE=3 SV=1	[more]
A0A096XAN7_9ROSI	1.3e-09	55.26	NADH-quinone oxidoreductase subunit H OS=Erodium rupestre GN=ndhA PE=3 SV=1	[more]
A0A096XCS1_9ROSI	1.3e-09	55.26	NADH-quinone oxidoreductase subunit H OS=Erodium foetidum subsp. foetidum GN=ndh...	[more]
A0A0H3W322_FRAVE	1.8e-09	54.05	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Fragaria vesca subsp....	[more]

BLAST of CSPI07G08620 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01100.1	1.3e-11	56.06	ATCG01100.1 NADH dehydrogenase family protein	[more]

BLAST of CSPI07G08620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|976899192\|gb\|KVH87822.1\|	4.1e-12	56.96	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H, parti...	[more]
gi\|571031480\|gb\|AHF21124.1\|	1.9e-09	55.26	NADH-plastoquinone oxidoreductase subunit 1 [Erodium rupestre]	[more]
gi\|571031556\|gb\|AHF21199.1\|	1.9e-09	55.26	NADH-plastoquinone oxidoreductase subunit 1 [Erodium manescavi]	[more]
gi\|574450476\|gb\|AHG24660.1\|	1.9e-09	55.26	NADH-plastoquinone oxidoreductase subunit 1 [Erodium foetidum subsp. foetidum]	[more]
gi\|823334190\|gb\|AKI31042.1\|	2.5e-09	54.05	NADH dehydrogenase subunit 1 (chloroplast) [Fragaria vesca subsp. bracteata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001694	NADH_UbQ_OxRdtase_su1/FPO
IPR018086	NADH_UbQ_OxRdtase_su1_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G08620.1	CSPI07G08620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PANTHER	PTHR11432	NADH DEHYDROGENASE SUBUNIT 1	coord: 6..56 score: 7.1
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PFAM	PF00146	NADHdh	coord: 24..56 score: 1.0
IPR018086	NADH:ubiquinone oxidoreductase, subunit 1, conserved site	PROSITE	PS00668	COMPLEX1_ND1_2	coord: 31..44 scor
None	No IPR available	PANTHER	PTHR11432:SF7	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 1, CHLOROPLASTIC	coord: 6..56 score: 7.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G08620	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G08620	Melon (DHL92) v3.5.1	cpimeB533
CSPI07G08620	Watermelon (Charleston Gray)	cpiwcgB549
CSPI07G08620	Watermelon (97103) v1	cpiwmB581
CSPI07G08620	Bottle gourd (USVL1VR-Ls)	cpilsiB527
CSPI07G08620	Melon (DHL92) v3.6.1	cpimedB537
CSPI07G08620	Cucumber (Gy14) v2	cgybcpiB334
CSPI07G08620	Silver-seed gourd	carcpiB0945
CSPI07G08620	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G08620	Cucumber (Chinese Long) v3	cpicucB418
CSPI07G08620	Watermelon (97103) v2	cpiwmbB593
CSPI07G08620	Wax gourd	cpiwgoB713