CSPI07G06650 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G06650
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr7 : 4838065 .. 4838244 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCAAAAAGCAGTCCCCAAGATTTCTTAGATGACCACAATGCCATCTGTGCCGAGTACGGTGTCGACCCGGTCACATGGAACAAAACTTTAGCTAAGTATTTGCTTAAAATTATGCCAAAACTAAGATCTCTACCTGCGAGATGGAGAACTCCATGGAACCTTATGGTGAAAACT

mRNA sequence

ATGGTTGCAAAAAGCAGTCCCCAAGATTTCTTAGATGACCACAATGCCATCTGTGCCGAGTACGGTGTCGACCCGGTCACATGGAACAAAACTTTAGCTAAGTATTTGCTTAAAATTATGCCAAAACTAAGATCTCTACCTGCGAGATGGAGAACTCCATGGAACCTTATGGTGAAAACT

Coding sequence (CDS)

ATGGTTGCAAAAAGCAGTCCCCAAGATTTCTTAGATGACCACAATGCCATCTGTGCCGAGTACGGTGTCGACCCGGTCACATGGAACAAAACTTTAGCTAAGTATTTGCTTAAAATTATGCCAAAACTAAGATCTCTACCTGCGAGATGGAGAACTCCATGGAACCTTATGGTGAAAACT

Homology

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BLAST of CSPI07G06650 vs. TrEMBL
Match: A0A0A0K2C5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070230 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-06
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 2  VAKSSPQDFLDDHNAICAEYGVDPVTWNKTLAKYLLK 39
          +A S+PQDF+D HNAI A+YGV PVTWNKT+A Y  K
Sbjct: 27 LANSTPQDFVDAHNAIRAKYGVGPVTWNKTIASYAEK 63

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BLAST of CSPI07G06650 vs. NCBI nr
Match: gi|659110141|ref|XP_008455070.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 5.3e-07
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1


Query: 2  VAKSSPQDFLDDHNAICAEYGVDPVTWNKTLAKY 36
          +AKSSPQ+F+D HNAI A+YGV PVTWNKTLA Y
Sbjct: 27 IAKSSPQEFVDAHNAIRAKYGVGPVTWNKTLASY 60

[Close]

BLAST of CSPI07G06650 vs. NCBI nr
Match: gi|449438606|ref|XP_004137079.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-06
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 2  VAKSSPQDFLDDHNAICAEYGVDPVTWNKTLAKYLLK 39
          +A S+PQDF+D HNAI A+YGV PVTWNKT+A Y  K
Sbjct: 27 LANSTPQDFVDAHNAIRAKYGVGPVTWNKTIASYAEK 63

The following BLAST results are available for this feature:

BLAST of CSPI07G06650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G06650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2C5_CUCSA	3.1e-06	67.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070230 PE=4 SV=1	[more]

BLAST of CSPI07G06650 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G06650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110141\|ref\|XP_008455070.1\|	5.3e-07	76.47	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo]	[more]
gi\|449438606\|ref\|XP_004137079.1\|	4.5e-06	67.57	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G06650.1	CSPI07G06650.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G06650	Cucumber (Chinese Long) v3	cpicucB386
CSPI07G06650	Cucumber (Chinese Long) v3	cpicucB405
CSPI07G06650	Cucumber (Chinese Long) v3	cpicucB415
CSPI07G06650	Watermelon (97103) v2	cpiwmbB542
CSPI07G06650	Watermelon (97103) v2	cpiwmbB554
CSPI07G06650	Watermelon (97103) v2	cpiwmbB580
CSPI07G06650	Wax gourd	cpiwgoB659
CSPI07G06650	Wax gourd	cpiwgoB672
CSPI07G06650	Wax gourd	cpiwgoB689
CSPI07G06650	Wild cucumber (PI 183967)	cpicpiB091
CSPI07G06650	Wild cucumber (PI 183967)	cpicpiB170
CSPI07G06650	Cucumber (Gy14) v1	cgycpiB336
CSPI07G06650	Cucumber (Gy14) v1	cgycpiB582
CSPI07G06650	Cucurbita maxima (Rimu)	cmacpiB143
CSPI07G06650	Cucurbita maxima (Rimu)	cmacpiB534
CSPI07G06650	Cucurbita maxima (Rimu)	cmacpiB786
CSPI07G06650	Cucurbita moschata (Rifu)	cmocpiB136
CSPI07G06650	Cucurbita moschata (Rifu)	cmocpiB525
CSPI07G06650	Cucurbita moschata (Rifu)	cmocpiB777
CSPI07G06650	Cucumber (Chinese Long) v2	cpicuB333
CSPI07G06650	Cucumber (Chinese Long) v2	cpicuB347
CSPI07G06650	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G06650	Melon (DHL92) v3.5.1	cpimeB538
CSPI07G06650	Melon (DHL92) v3.5.1	cpimeB557
CSPI07G06650	Melon (DHL92) v3.5.1	cpimeB569
CSPI07G06650	Melon (DHL92) v3.5.1	cpimeB573
CSPI07G06650	Watermelon (Charleston Gray)	cpiwcgB561
CSPI07G06650	Watermelon (Charleston Gray)	cpiwcgB576
CSPI07G06650	Watermelon (Charleston Gray)	cpiwcgB599
CSPI07G06650	Watermelon (97103) v1	cpiwmB594
CSPI07G06650	Watermelon (97103) v1	cpiwmB596
CSPI07G06650	Watermelon (97103) v1	cpiwmB623
CSPI07G06650	Cucurbita pepo (Zucchini)	cpecpiB258
CSPI07G06650	Cucurbita pepo (Zucchini)	cpecpiB470
CSPI07G06650	Cucurbita pepo (Zucchini)	cpecpiB697
CSPI07G06650	Cucurbita pepo (Zucchini)	cpecpiB804
CSPI07G06650	Bottle gourd (USVL1VR-Ls)	cpilsiB534
CSPI07G06650	Bottle gourd (USVL1VR-Ls)	cpilsiB536
CSPI07G06650	Bottle gourd (USVL1VR-Ls)	cpilsiB550
CSPI07G06650	Melon (DHL92) v3.6.1	cpimedB558
CSPI07G06650	Melon (DHL92) v3.6.1	cpimedB523
CSPI07G06650	Melon (DHL92) v3.6.1	cpimedB542
CSPI07G06650	Cucumber (Gy14) v2	cgybcpiB088
CSPI07G06650	Cucumber (Gy14) v2	cgybcpiB199
CSPI07G06650	Cucumber (Gy14) v2	cgybcpiB332
CSPI07G06650	Silver-seed gourd	carcpiB0214
CSPI07G06650	Silver-seed gourd	carcpiB0493
CSPI07G06650	Silver-seed gourd	carcpiB0767