CSPI07G06200 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G06200
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Phloem filament protein
Location	Chr7 : 4593631 .. 4594339 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATTCTTTCCAAAATTATTCTTTGACTTGCACTATTTCTCCCATGAATACACTTGTATATAAAGCTTCAACAACTCATGCAATGGCAACCCACCAAACAAAATTTTCAATACTATCAAATATCAACTAAATTAGCTCACATAAAAATGACGATTGGTATTGGTGGAGGAATTGGTATTGGCATTGGCGTTCCTGGTATCAAAGTATCGATCGGTGGAGGCATCGGTATCGGAAGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGAGTCAAGTTCCCAATGCGCATGCAGATCAAGTTATTATAAATGTTGCTAACTTTGCAGTGGCAGCGTTCAACCAAAAATATGGAAATAGGCTTGTGTTTCATGCAGTTTTGGAAGCTTGGGTTGTTGTTCTTCCTGATGGCAAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGCATCGTTGCCTCTACTTTCATGCTATTGTGATTGAAATAGTTGGCGTTCCCCCTGGCTGGAATCTTTTTTCTTTCACCCAAATCATCGACTAAATTAAAAGAAAAGTTATATGTATAATCGAAGTTCATACTTATGTGTGAGAAGTACACAATAATAAATCTTATATGATACTGTACTGCTCTACTTTTTTTAACTATCTGTTATAGAATAATAATGGAGGCCAAACGACGTTTTTAGTCCCAAACCC

mRNA sequence

ATGCAATGGCAACCCACCAAACAAAATTTTCAATACTATCAAATATCAACTAAATTAGCTCACATAAAAATGACGATTGGTATTGGTGGAGGAATTGGTATTGGCATTGGCGTTCCTGGTATCAAAGTATCGATCGGTGGAGGCATCGGTATCGGAAGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGAGTCAAGTTCCCAATGCGCATGCAGATCAAGTTATTATAAATGTTGCTAACTTTGCAGTGGCAGCGTTCAACCAAAAATATGGAAATAGGCTTGTGTTTCATGCAGTTTTGGAAGCTTGGGTTGTTGTTCTTCCTGATGGCAAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGCATCGTTGCCTCTACTTTCATGCTATTGTGATTGAAATAGTTGGCGTTCCCCCTGGCTGGAATCTTTTTTCTTTCACCCAAATCATCGACTAA

Coding sequence (CDS)

ATGCAATGGCAACCCACCAAACAAAATTTTCAATACTATCAAATATCAACTAAATTAGCTCACATAAAAATGACGATTGGTATTGGTGGAGGAATTGGTATTGGCATTGGCGTTCCTGGTATCAAAGTATCGATCGGTGGAGGCATCGGTATCGGAAGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGAGTCAAGTTCCCAATGCGCATGCAGATCAAGTTATTATAAATGTTGCTAACTTTGCAGTGGCAGCGTTCAACCAAAAATATGGAAATAGGCTTGTGTTTCATGCAGTTTTGGAAGCTTGGGTTGTTGTTCTTCCTGATGGCAAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGCATCGTTGCCTCTACTTTCATGCTATTGTGATTGAAATAGTTGGCGTTCCCCCTGGCTGGAATCTTTTTTCTTTCACCCAAATCATCGACTAA

Homology

[Close]

BLAST of CSPI07G06200 vs. TrEMBL
Match: A0A0A0K477_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067390 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 1.7e-83
Identity = 154/158 (97.47%), Postives = 156/158 (98.73%), Query Frame = 1


Query: 1   MQWQPTKQNFQYYQISTKLAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKS 60
           MQWQPTKQNFQYYQISTKLAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKS
Sbjct: 1   MQWQPTKQNFQYYQISTKLAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKS 60

Query: 61  HDPSKKWSQVPNAHADQVIINVANFAVAAFNQKYGNRLVFHAVLEAWVVVLPDGKKEYSI 120
           HDPSKKWSQVPNA ADQVIINVANFAVAAFNQKYGN+LVFHAVLEAWVVVLPDGKKEYSI
Sbjct: 61  HDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSI 120

Query: 121 ELVAKDCLHRCLYFHAIVIEIVGVPPGWNLFSFTQIID 159
           ELVAKDCL+RCLYFHAIVIEIVGVPPGWNLFSFTQI D
Sbjct: 121 ELVAKDCLNRCLYFHAIVIEIVGVPPGWNLFSFTQISD 158

[Close]

BLAST of CSPI07G06200 vs. TrEMBL
Match: E5GCR5_CUCME (Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.5e-50
Identity = 97/135 (71.85%), Postives = 112/135 (82.96%), Query Frame = 1


Query: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAHADQVIINVA 83
           MT+GIGGGI IG+G+PGI +SIGGGIGI  RKGGCKSHDPSKKW+++ + + D  II +A
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVN-DPAIIEIA 60

Query: 84  NFAVAAFNQKYGNRLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLHRCLYFHAIVIEIVG 143
            FAV  FNQK+GN L F AVLEAWVVV  DGKKEYSIELVAKDCLHRCL +HA+VIEI G
Sbjct: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICG 120

Query: 144 VPPGWNLFSFTQIID 159
            PPGWNL SF QI++
Sbjct: 121 TPPGWNLVSFNQIVE 134

[Close]

BLAST of CSPI07G06200 vs. TrEMBL
Match: E5GCR6_CUCME (Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.2e-34
Identity = 84/136 (61.76%), Postives = 96/136 (70.59%), Query Frame = 1


Query: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAHADQVIINVA 83
           MT+GIGG IGIG G+PG  +SIGGGIGIG RKGGCKSH+PSKKW Q+ N  A  V +  A
Sbjct: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDV-LEAA 60

Query: 84  NFAVAAFNQKYGNRLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLHRCLYFHAIVIE-IV 143
            FAV AFN+KY N L F  V EAWV  + + +KEYSIELVAKDC HR L FHA+VIE  V
Sbjct: 61  KFAVDAFNKKYENNLEFQYVTEAWVHEV-NNEKEYSIELVAKDCFHRLLEFHAVVIEKTV 120

Query: 144 GVPPGWNLFSFTQIID 159
                W L SF +I D
Sbjct: 121 DHKKIWILVSFERIFD 134

[Close]

BLAST of CSPI07G06200 vs. TrEMBL
Match: A0A0A0K281_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067350 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.3e-30
Identity = 77/137 (56.20%), Postives = 96/137 (70.07%), Query Frame = 1


Query: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRK-GGCKSHDPSKKWSQVPNAHADQVIINV 83
           MTIGIGGGIG+G+  PG+ + IGGGIG+G+++ GGCKSHDPSKKWS  PN   D+V+   
Sbjct: 1   MTIGIGGGIGLGL--PGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPN---DRVVEIY 60

Query: 84  ANFAVAAFNQKYGNRLVFHAVLEAWVVVLPDGKKEYSIELVAKD-CLHRCLYFHAIVIEI 143
           A FAV  +N+K+G  LVF +VLEAWV V P GKKEYSIELV ++ C +  L +HA+V E 
Sbjct: 61  ARFAVDEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHAVVTET 120

Query: 144 VGVPPGWNLFSFTQIID 159
                   L SF QI D
Sbjct: 121 GCAARRKTLVSFDQIDD 132

[Close]

BLAST of CSPI07G06200 vs. TrEMBL
Match: A0A0A0K660_CUCSA (Phloem filament protein OS=Cucumis sativus GN=Csa_7G067370 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.6e-27
Identity = 77/134 (57.46%), Postives = 88/134 (65.67%), Query Frame = 1


Query: 27  GIGGGIGIGIGVPGIKVSIGGGIGIGSRK-GGCKSHDPSKKWSQVPNAHADQVIINVANF 86
           G+ GG+G G     +K  IGGGI +GS++ GGCKSHDPSKKW   PN   DQV+   A F
Sbjct: 7   GLDGGLGFGFSPFSLK--IGGGIDLGSKRPGGCKSHDPSKKWVICPN---DQVV-EAAKF 66

Query: 87  AVAAFNQKYGNRLVFHAVLEAWVVVLPDGKKEYSIELVAKD-CLHRCLYFHAIVIEIVGV 146
           AVA FN+KYGN LVF  VLEAWV   P GKKEYSIELV  D CL+R L FHA+V E    
Sbjct: 67  AVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCA 126

Query: 147 PPGWNLFSFTQIID 159
                L SF QI+D
Sbjct: 127 ARKRTLVSFDQIVD 134

[Close]

BLAST of CSPI07G06200 vs. NCBI nr
Match: gi|778724618|ref|XP_011658840.1| (PREDICTED: uncharacterized protein LOC105436098 [Cucumis sativus])

HSP 1 Score: 316.6 bits (810), Expect = 2.4e-83
Identity = 154/158 (97.47%), Postives = 156/158 (98.73%), Query Frame = 1


Query: 1   MQWQPTKQNFQYYQISTKLAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKS 60
           MQWQPTKQNFQYYQISTKLAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKS
Sbjct: 1   MQWQPTKQNFQYYQISTKLAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKS 60

Query: 61  HDPSKKWSQVPNAHADQVIINVANFAVAAFNQKYGNRLVFHAVLEAWVVVLPDGKKEYSI 120
           HDPSKKWSQVPNA ADQVIINVANFAVAAFNQKYGN+LVFHAVLEAWVVVLPDGKKEYSI
Sbjct: 61  HDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSI 120

Query: 121 ELVAKDCLHRCLYFHAIVIEIVGVPPGWNLFSFTQIID 159
           ELVAKDCL+RCLYFHAIVIEIVGVPPGWNLFSFTQI D
Sbjct: 121 ELVAKDCLNRCLYFHAIVIEIVGVPPGWNLFSFTQISD 158

[Close]

BLAST of CSPI07G06200 vs. NCBI nr
Match: gi|659110227|ref|XP_008455116.1| (PREDICTED: uncharacterized protein LOC103495368 [Cucumis melo])

HSP 1 Score: 224.9 bits (572), Expect = 9.7e-56
Identity = 110/160 (68.75%), Postives = 126/160 (78.75%), Query Frame = 1


Query: 1   MQWQPTKQNF--QYYQISTKLAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGC 60
           MQWQPT        YQISTK  + KMT+GIGGGI IG+G+PGI +SIGGGIGI  RKGGC
Sbjct: 1   MQWQPTHHKIFNTIYQISTKDQYKKMTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGC 60

Query: 61  KSHDPSKKWSQVPNAHADQVIINVANFAVAAFNQKYGNRLVFHAVLEAWVVVLPDGKKEY 120
           KSHDPSKKW+++ + + D  II +A FAV  FNQK+GN L F AVLEAWVVV  DGKKEY
Sbjct: 61  KSHDPSKKWTEIKSVN-DPAIIEIAKFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEY 120

Query: 121 SIELVAKDCLHRCLYFHAIVIEIVGVPPGWNLFSFTQIID 159
           SIELVAKDCLHRCL +HA+VIEI G PPGWNL SF QI++
Sbjct: 121 SIELVAKDCLHRCLQYHAVVIEICGTPPGWNLVSFNQIVE 159

[Close]

BLAST of CSPI07G06200 vs. NCBI nr
Match: gi|307136458|gb|ADN34263.1| (phloem filament protein [Cucumis melo subsp. melo])

HSP 1 Score: 205.3 bits (521), Expect = 7.9e-50
Identity = 97/135 (71.85%), Postives = 112/135 (82.96%), Query Frame = 1


Query: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAHADQVIINVA 83
           MT+GIGGGI IG+G+PGI +SIGGGIGI  RKGGCKSHDPSKKW+++ + + D  II +A
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVN-DPAIIEIA 60

Query: 84  NFAVAAFNQKYGNRLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLHRCLYFHAIVIEIVG 143
            FAV  FNQK+GN L F AVLEAWVVV  DGKKEYSIELVAKDCLHRCL +HA+VIEI G
Sbjct: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICG 120

Query: 144 VPPGWNLFSFTQIID 159
            PPGWNL SF QI++
Sbjct: 121 TPPGWNLVSFNQIVE 134

[Close]

BLAST of CSPI07G06200 vs. NCBI nr
Match: gi|307136459|gb|ADN34264.1| (phloem filament protein [Cucumis melo subsp. melo])

HSP 1 Score: 152.5 bits (384), Expect = 6.1e-34
Identity = 84/136 (61.76%), Postives = 96/136 (70.59%), Query Frame = 1


Query: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAHADQVIINVA 83
           MT+GIGG IGIG G+PG  +SIGGGIGIG RKGGCKSH+PSKKW Q+ N  A  V +  A
Sbjct: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDV-LEAA 60

Query: 84  NFAVAAFNQKYGNRLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLHRCLYFHAIVIE-IV 143
            FAV AFN+KY N L F  V EAWV  + + +KEYSIELVAKDC HR L FHA+VIE  V
Sbjct: 61  KFAVDAFNKKYENNLEFQYVTEAWVHEV-NNEKEYSIELVAKDCFHRLLEFHAVVIEKTV 120

Query: 144 GVPPGWNLFSFTQIID 159
                W L SF +I D
Sbjct: 121 DHKKIWILVSFERIFD 134

[Close]

BLAST of CSPI07G06200 vs. NCBI nr
Match: gi|778724610|ref|XP_011658838.1| (PREDICTED: uncharacterized protein LOC105436096 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 9.1e-30
Identity = 77/137 (56.20%), Postives = 96/137 (70.07%), Query Frame = 1


Query: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRK-GGCKSHDPSKKWSQVPNAHADQVIINV 83
           MTIGIGGGIG+G+  PG+ + IGGGIG+G+++ GGCKSHDPSKKWS  PN   D+V+   
Sbjct: 1   MTIGIGGGIGLGL--PGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPN---DRVVEIY 60

Query: 84  ANFAVAAFNQKYGNRLVFHAVLEAWVVVLPDGKKEYSIELVAKD-CLHRCLYFHAIVIEI 143
           A FAV  +N+K+G  LVF +VLEAWV V P GKKEYSIELV ++ C +  L +HA+V E 
Sbjct: 61  ARFAVDEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHAVVTET 120

Query: 144 VGVPPGWNLFSFTQIID 159
                   L SF QI D
Sbjct: 121 GCAARRKTLVSFDQIDD 132

The following BLAST results are available for this feature:

BLAST of CSPI07G06200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G06200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K477_CUCSA	1.7e-83	97.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067390 PE=4 SV=1	[more]
E5GCR5_CUCME	5.5e-50	71.85	Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCR6_CUCME	4.2e-34	61.76	Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0K281_CUCSA	6.3e-30	56.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067350 PE=4 SV=1	[more]
A0A0A0K660_CUCSA	6.6e-27	57.46	Phloem filament protein OS=Cucumis sativus GN=Csa_7G067370 PE=4 SV=1	[more]

BLAST of CSPI07G06200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G06200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724618\|ref\|XP_011658840.1\|	2.4e-83	97.47	PREDICTED: uncharacterized protein LOC105436098 [Cucumis sativus]	[more]
gi\|659110227\|ref\|XP_008455116.1\|	9.7e-56	68.75	PREDICTED: uncharacterized protein LOC103495368 [Cucumis melo]	[more]
gi\|307136458\|gb\|ADN34263.1\|	7.9e-50	71.85	phloem filament protein [Cucumis melo subsp. melo]	[more]
gi\|307136459\|gb\|ADN34264.1\|	6.1e-34	61.76	phloem filament protein [Cucumis melo subsp. melo]	[more]
gi\|778724610\|ref\|XP_011658838.1\|	9.1e-30	56.20	PREDICTED: uncharacterized protein LOC105436096 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009994	PP1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G06200.1	CSPI07G06200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009994	Phloem filament PP1	PFAM	PF07430	PP1	coord: 79..140 score: 1.
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 67..131 score: 2.
None	No IPR available	unknown	SSF54403	Cystatin/monellin	coord: 67..140 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G06200	Cucurbita pepo (Zucchini)	cpecpiB258
CSPI07G06200	Cucurbita pepo (Zucchini)	cpecpiB472
CSPI07G06200	Cucurbita pepo (Zucchini)	cpecpiB697
CSPI07G06200	Bottle gourd (USVL1VR-Ls)	cpilsiB534
CSPI07G06200	Bottle gourd (USVL1VR-Ls)	cpilsiB536
CSPI07G06200	Melon (DHL92) v3.6.1	cpimedB558
CSPI07G06200	Melon (DHL92) v3.6.1	cpimedB523
CSPI07G06200	Cucumber (Gy14) v2	cgybcpiB332
CSPI07G06200	Silver-seed gourd	carcpiB0323
CSPI07G06200	Silver-seed gourd	carcpiB0414
CSPI07G06200	Silver-seed gourd	carcpiB0767
CSPI07G06200	Cucumber (Chinese Long) v3	cpicucB415
CSPI07G06200	Watermelon (97103) v2	cpiwmbB542
CSPI07G06200	Watermelon (97103) v2	cpiwmbB584
CSPI07G06200	Wax gourd	cpiwgoB659
CSPI07G06200	Wax gourd	cpiwgoB672
CSPI07G06200	Cucumber (Gy14) v1	cgycpiB336
CSPI07G06200	Cucurbita maxima (Rimu)	cmacpiB143
CSPI07G06200	Cucurbita maxima (Rimu)	cmacpiB534
CSPI07G06200	Cucurbita moschata (Rifu)	cmocpiB136
CSPI07G06200	Cucurbita moschata (Rifu)	cmocpiB525
CSPI07G06200	Cucurbita moschata (Rifu)	cmocpiB777
CSPI07G06200	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G06200	Melon (DHL92) v3.5.1	cpimeB538
CSPI07G06200	Watermelon (Charleston Gray)	cpiwcgB541
CSPI07G06200	Watermelon (Charleston Gray)	cpiwcgB561
CSPI07G06200	Watermelon (97103) v1	cpiwmB574
CSPI07G06200	Watermelon (97103) v1	cpiwmB594