CSPI07G06190 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G06190
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Multidrug resistance protein ABC transporter family
Location	Chr7 : 4591576 .. 4592054 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGCATTAGAAGAGAGGTGTCAGCTGAAGGCCACTGTCAGCAGTCTACCGAATCAGCTCGACTCATCTGTGAACTGATGAAGGTGGAAACTGGAATGTGGGACATCGCCAACTCTTCTGTCTTGGTCAAGTGCTACTCAAACCAAACAAAATTCTCGTTCTCAATTAGGCTACCGCTTCAATCGACTCGGCAACTGACACCATTTTACAAAGAATTATAAGGGAAGGAGTTTTCAGAATGCACTGTTGTAACAGTAGCTCACAGAATTCTACCGTCTTTGACAATGACTTTGGTCATTTGGTTGAATATGAAGAACCCTCAAAGCTGATGGAAACCAACTCTTATTTCTCCAAACTTGTAGCTGATCAATACTGGGCTAACTGTCAAAGAGAGACTCTTCTCATCACTAGACACAACTTCTTGGAAACAAAGTACTTCTCCTTTTGGTACAATTGTAGGGATTTTGACTTCTAA

mRNA sequence

ATGGAAGGCATTAGAAGAGAGGTGTCAGCTGAAGGCCACTGTCAGCAGTCTACCGAATCAGCTCGACTCATCTGTGAACTGATGAAGGTGGAAACTGGAATGTGGGACATCGCCAACTCTTCTGTCTTGGCTACCGCTTCAATCGACTCGGCAACTGACACCATTTTACAAAGAATTATAAGGGAAGGAGTTTTCAGAATGCACTGTTGTAACAGTAGCTCACAGAATTCTACCGTCTTTGACAATGACTTTGGTCATTTGGTTGAATATGAAGAACCCTCAAAGCTGATGGAAACCAACTCTTATTTCTCCAAACTTGTAGCTGATCAATACTGGGCTAACTGTCAAAGAGAGACTCTTCTCATCACTAGACACAACTTCTTGGAAACAAAGTACTTCTCCTTTTGGTACAATTGTAGGGATTTTGACTTCTAA

Coding sequence (CDS)

ATGGAAGGCATTAGAAGAGAGGTGTCAGCTGAAGGCCACTGTCAGCAGTCTACCGAATCAGCTCGACTCATCTGTGAACTGATGAAGGTGGAAACTGGAATGTGGGACATCGCCAACTCTTCTGTCTTGGCTACCGCTTCAATCGACTCGGCAACTGACACCATTTTACAAAGAATTATAAGGGAAGGAGTTTTCAGAATGCACTGTTGTAACAGTAGCTCACAGAATTCTACCGTCTTTGACAATGACTTTGGTCATTTGGTTGAATATGAAGAACCCTCAAAGCTGATGGAAACCAACTCTTATTTCTCCAAACTTGTAGCTGATCAATACTGGGCTAACTGTCAAAGAGAGACTCTTCTCATCACTAGACACAACTTCTTGGAAACAAAGTACTTCTCCTTTTGGTACAATTGTAGGGATTTTGACTTCTAA

Homology

[Close]

BLAST of CSPI07G06190 vs. Swiss-Prot
Match: AB8C_ARATH (ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3)

HSP 1 Score: 82.0 bits (201), Expect = 5.8e-15
Identity = 47/79 (59.49%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 44   ATASIDSATDTILQRIIREGVFRMHCCNSSSQNSTVFDND------FGHLVEYEEPSKLM 103
            ATASIDSATD I+QRIIRE          + +  TV D+D      FG LVEY EPSKLM
Sbjct: 1378 ATASIDSATDAIIQRIIREEFADCTVITVAHRVPTVIDSDMVMVLSFGDLVEYNEPSKLM 1437

Query: 104  ETNSYFSKLVADQYWANCQ 117
            ET+SYFSKLVA +YWA+C+
Sbjct: 1438 ETDSYFSKLVA-EYWASCR 1455

[Close]

BLAST of CSPI07G06190 vs. TrEMBL
Match: A0A0A0K2Q3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067380 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.6e-40
Identity = 89/111 (80.18%), Postives = 97/111 (87.39%), Query Frame = 1


Query: 25  CELMKVETGMWDIANSSVLATASIDSATDTILQRIIREGVFRMHCCNSSSQNSTVFDNDF 84
           C+L    + + +  +SS  ATASIDSATDTILQRIIREGVFRMH CNSSSQ+STVFDNDF
Sbjct: 98  CQLKATVSSLPNQLDSS--ATASIDSATDTILQRIIREGVFRMHYCNSSSQSSTVFDNDF 157

Query: 85  GHLVEYEEPSKLMETNSYFSKLVADQYWANCQRETLLITRHNFLETKYFSF 136
           GHLVEYEEPSKLMETNSYFSKLVADQY AN QRETLLIT+HN LETKYF+F
Sbjct: 158 GHLVEYEEPSKLMETNSYFSKLVADQYCANYQRETLLITKHNVLETKYFTF 206

[Close]

BLAST of CSPI07G06190 vs. TrEMBL
Match: A0A0A0K7I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067360 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 7.8e-35
Identity = 86/125 (68.80%), Postives = 91/125 (72.80%), Query Frame = 1


Query: 1   MEGIRREVSAEGHCQQSTESARLICELMKVETGMWDIANSSVL----------------- 60
           MEGIR EVSAEGHCQQST+SARLIC       G W +    +                  
Sbjct: 1   MEGIR-EVSAEGHCQQSTKSARLIC-------GNWSVGKRQLFRLGRVLLIRHKILVLDE 60

Query: 61  ATASIDSATDTILQRIIREGVFRMHCCNSSSQNSTVFDNDFGHLVEYEEPSKLMETNSYF 109
           AT SIDSATDTILQRIIREGVFRMH CNSSSQ+STVFDNDFGHLVEYEEPSKLMETNSYF
Sbjct: 61  ATTSIDSATDTILQRIIREGVFRMHYCNSSSQSSTVFDNDFGHLVEYEEPSKLMETNSYF 117

[Close]

BLAST of CSPI07G06190 vs. TrEMBL
Match: A0A0A0KCQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G451910 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-16
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 1


Query: 44   ATASIDSATDTILQRIIREGVFRMHCCNSSSQNSTVFDND------FGHLVEYEEPSKLM 103
            ATASIDSATDT+LQRIIRE          + +  TV D+D      FG+LVEYEEPSKLM
Sbjct: 1104 ATASIDSATDTVLQRIIREEFSECTVVTVAHRVPTVIDSDKVMVLSFGNLVEYEEPSKLM 1163

Query: 104  ETNSYFSKLVADQYWANCQRET 120
            ETNSYFSKLVA +YWA+C+R++
Sbjct: 1164 ETNSYFSKLVA-EYWASCRRDS 1184

[Close]

BLAST of CSPI07G06190 vs. TrEMBL
Match: A0A059AIE4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02875 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-13
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 1


Query: 44   ATASIDSATDTILQRIIREGVFRMHCCNSSSQNSTVFDND------FGHLVEYEEPSKLM 103
            ATASIDSATD +LQRIIR+          + +  TV D+D      +G+LVEYEEP++LM
Sbjct: 1344 ATASIDSATDAVLQRIIRQEFSDCTVITVAHRVPTVIDSDMVMVLSYGNLVEYEEPTRLM 1403

Query: 104  ETNSYFSKLVADQYWANCQRET 120
            ETNSYFSKLVA +YW++C+R +
Sbjct: 1404 ETNSYFSKLVA-EYWSSCRRSS 1424

[Close]

BLAST of CSPI07G06190 vs. TrEMBL
Match: V4M618_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10019895mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.9e-13
Identity = 47/79 (59.49%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 44   ATASIDSATDTILQRIIREGVFRMHCCNSSSQNSTVFDND------FGHLVEYEEPSKLM 103
            ATASIDSATD I+QRIIRE          + +  TV D+D      FG LVEY EPSKLM
Sbjct: 1374 ATASIDSATDAIIQRIIREEFADCTVITVAHRVPTVIDSDMVMVLSFGELVEYNEPSKLM 1433

Query: 104  ETNSYFSKLVADQYWANCQ 117
            ET+SYFSKLVA +YWA+C+
Sbjct: 1434 ETDSYFSKLVA-EYWASCR 1451

[Close]

BLAST of CSPI07G06190 vs. TAIR10
Match: AT3G21250.2 (AT3G21250.2 multidrug resistance-associated protein 6)

HSP 1 Score: 82.0 bits (201), Expect = 3.3e-16
Identity = 47/79 (59.49%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 44   ATASIDSATDTILQRIIREGVFRMHCCNSSSQNSTVFDND------FGHLVEYEEPSKLM 103
            ATASIDSATD I+QRIIRE          + +  TV D+D      FG LVEY EPSKLM
Sbjct: 1378 ATASIDSATDAIIQRIIREEFADCTVITVAHRVPTVIDSDMVMVLSFGDLVEYNEPSKLM 1437

Query: 104  ETNSYFSKLVADQYWANCQ 117
            ET+SYFSKLVA +YWA+C+
Sbjct: 1438 ETDSYFSKLVA-EYWASCR 1455

[Close]

BLAST of CSPI07G06190 vs. TAIR10
Match: AT3G59140.1 (AT3G59140.1 multidrug resistance-associated protein 14)

HSP 1 Score: 50.4 bits (119), Expect = 1.0e-06
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1


Query: 44   ATASIDSATDTILQRIIREGVFRMHCCNSSSQNSTVFDNDF------GHLVEYEEPSKLM 103
            ATASID+ATD ILQ+ IR           + +  TV D         G +VEY+EP KLM
Sbjct: 1370 ATASIDNATDLILQKTIRREFADCTVITVAHRIPTVMDCTMVLSISDGRIVEYDEPMKLM 1429

Query: 104  -ETNSYFSKLVADQYWAN 115
             + NS F KLV  +YW++
Sbjct: 1430 KDENSLFGKLV-KEYWSH 1446

[Close]

BLAST of CSPI07G06190 vs. NCBI nr
Match: gi|700188550|gb|KGN43783.1| (hypothetical protein Csa_7G067380 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 5.2e-40
Identity = 89/111 (80.18%), Postives = 97/111 (87.39%), Query Frame = 1


Query: 25  CELMKVETGMWDIANSSVLATASIDSATDTILQRIIREGVFRMHCCNSSSQNSTVFDNDF 84
           C+L    + + +  +SS  ATASIDSATDTILQRIIREGVFRMH CNSSSQ+STVFDNDF
Sbjct: 98  CQLKATVSSLPNQLDSS--ATASIDSATDTILQRIIREGVFRMHYCNSSSQSSTVFDNDF 157

Query: 85  GHLVEYEEPSKLMETNSYFSKLVADQYWANCQRETLLITRHNFLETKYFSF 136
           GHLVEYEEPSKLMETNSYFSKLVADQY AN QRETLLIT+HN LETKYF+F
Sbjct: 158 GHLVEYEEPSKLMETNSYFSKLVADQYCANYQRETLLITKHNVLETKYFTF 206

[Close]

BLAST of CSPI07G06190 vs. NCBI nr
Match: gi|700188548|gb|KGN43781.1| (hypothetical protein Csa_7G067360 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-34
Identity = 86/125 (68.80%), Postives = 91/125 (72.80%), Query Frame = 1


Query: 1   MEGIRREVSAEGHCQQSTESARLICELMKVETGMWDIANSSVL----------------- 60
           MEGIR EVSAEGHCQQST+SARLIC       G W +    +                  
Sbjct: 1   MEGIR-EVSAEGHCQQSTKSARLIC-------GNWSVGKRQLFRLGRVLLIRHKILVLDE 60

Query: 61  ATASIDSATDTILQRIIREGVFRMHCCNSSSQNSTVFDNDFGHLVEYEEPSKLMETNSYF 109
           AT SIDSATDTILQRIIREGVFRMH CNSSSQ+STVFDNDFGHLVEYEEPSKLMETNSYF
Sbjct: 61  ATTSIDSATDTILQRIIREGVFRMHYCNSSSQSSTVFDNDFGHLVEYEEPSKLMETNSYF 117

[Close]

BLAST of CSPI07G06190 vs. NCBI nr
Match: gi|659124820|ref|XP_008462364.1| (PREDICTED: ABC transporter C family member 8 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-16
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 1


Query: 44   ATASIDSATDTILQRIIREGVFRMHCCNSSSQNSTVFDND------FGHLVEYEEPSKLM 103
            ATASIDSATDTILQRIIRE          + +  TV D+D      FG+LVEYEEPSKLM
Sbjct: 1189 ATASIDSATDTILQRIIREEFSECTVVTVAHRVPTVIDSDKVMVLSFGNLVEYEEPSKLM 1248

Query: 104  ETNSYFSKLVADQYWANCQRET 120
            ETNSYFSKLVA +YWA+C+R++
Sbjct: 1249 ETNSYFSKLVA-EYWASCRRDS 1269

[Close]

BLAST of CSPI07G06190 vs. NCBI nr
Match: gi|778730516|ref|XP_011659804.1| (PREDICTED: ABC transporter C family member 8 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 5.2e-16
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 1


Query: 44   ATASIDSATDTILQRIIREGVFRMHCCNSSSQNSTVFDND------FGHLVEYEEPSKLM 103
            ATASIDSATDT+LQRIIRE          + +  TV D+D      FG+LVEYEEPSKLM
Sbjct: 1115 ATASIDSATDTVLQRIIREEFSECTVVTVAHRVPTVIDSDKVMVLSFGNLVEYEEPSKLM 1174

Query: 104  ETNSYFSKLVADQYWANCQRET 120
            ETNSYFSKLVA +YWA+C+R++
Sbjct: 1175 ETNSYFSKLVA-EYWASCRRDS 1195

[Close]

BLAST of CSPI07G06190 vs. NCBI nr
Match: gi|700190303|gb|KGN45536.1| (hypothetical protein Csa_7G451910 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 5.2e-16
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 1


Query: 44   ATASIDSATDTILQRIIREGVFRMHCCNSSSQNSTVFDND------FGHLVEYEEPSKLM 103
            ATASIDSATDT+LQRIIRE          + +  TV D+D      FG+LVEYEEPSKLM
Sbjct: 1104 ATASIDSATDTVLQRIIREEFSECTVVTVAHRVPTVIDSDKVMVLSFGNLVEYEEPSKLM 1163

Query: 104  ETNSYFSKLVADQYWANCQRET 120
            ETNSYFSKLVA +YWA+C+R++
Sbjct: 1164 ETNSYFSKLVA-EYWASCRRDS 1184

The following BLAST results are available for this feature:

BLAST of CSPI07G06190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AB8C_ARATH	5.8e-15	59.49	ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3	[more]

BLAST of CSPI07G06190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2Q3_CUCSA	3.6e-40	80.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067380 PE=4 SV=1	[more]
A0A0A0K7I7_CUCSA	7.8e-35	68.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067360 PE=4 SV=1	[more]
A0A0A0KCQ4_CUCSA	3.6e-16	62.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G451910 PE=4 SV=1	[more]
A0A059AIE4_EUCGR	2.2e-13	54.88	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02875 PE=4 SV=1	[more]
V4M618_EUTSA	4.9e-13	59.49	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10019895mg PE=4 SV=1	[more]

BLAST of CSPI07G06190 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G21250.2	3.3e-16	59.49	multidrug resistance-associated protein 6	[more]
AT3G59140.1	1.0e-06	43.59	multidrug resistance-associated protein 14	[more]

BLAST of CSPI07G06190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188550\|gb\|KGN43783.1\|	5.2e-40	80.18	hypothetical protein Csa_7G067380 [Cucumis sativus]	[more]
gi\|700188548\|gb\|KGN43781.1\|	1.1e-34	68.80	hypothetical protein Csa_7G067360 [Cucumis sativus]	[more]
gi\|659124820\|ref\|XP_008462364.1\|	4.0e-16	63.41	PREDICTED: ABC transporter C family member 8 [Cucumis melo]	[more]
gi\|778730516\|ref\|XP_011659804.1\|	5.2e-16	62.20	PREDICTED: ABC transporter C family member 8 [Cucumis sativus]	[more]
gi\|700190303\|gb\|KGN45536.1\|	5.2e-16	62.20	hypothetical protein Csa_7G451910 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G06190.1	CSPI07G06190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24223	FAMILY NOT NAMED	coord: 44..125 score: 1.0
None	No IPR available	PANTHER	PTHR24223:SF108	ABC TRANSPORTER C FAMILY MEMBER 8	coord: 44..125 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G06190	Wax gourd	cpiwgoB659
CSPI07G06190	Wax gourd	cpiwgoB672
CSPI07G06190	Cucumber (Gy14) v1	cgycpiB336
CSPI07G06190	Cucurbita maxima (Rimu)	cmacpiB143
CSPI07G06190	Cucurbita maxima (Rimu)	cmacpiB534
CSPI07G06190	Cucurbita moschata (Rifu)	cmocpiB136
CSPI07G06190	Cucurbita moschata (Rifu)	cmocpiB525
CSPI07G06190	Cucurbita moschata (Rifu)	cmocpiB777
CSPI07G06190	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G06190	Melon (DHL92) v3.5.1	cpimeB538
CSPI07G06190	Watermelon (Charleston Gray)	cpiwcgB541
CSPI07G06190	Watermelon (Charleston Gray)	cpiwcgB561
CSPI07G06190	Watermelon (97103) v1	cpiwmB574
CSPI07G06190	Watermelon (97103) v1	cpiwmB594
CSPI07G06190	Cucurbita pepo (Zucchini)	cpecpiB258
CSPI07G06190	Cucurbita pepo (Zucchini)	cpecpiB472
CSPI07G06190	Cucurbita pepo (Zucchini)	cpecpiB697
CSPI07G06190	Bottle gourd (USVL1VR-Ls)	cpilsiB534
CSPI07G06190	Bottle gourd (USVL1VR-Ls)	cpilsiB536
CSPI07G06190	Melon (DHL92) v3.6.1	cpimedB558
CSPI07G06190	Melon (DHL92) v3.6.1	cpimedB523
CSPI07G06190	Cucumber (Gy14) v2	cgybcpiB332
CSPI07G06190	Silver-seed gourd	carcpiB0323
CSPI07G06190	Silver-seed gourd	carcpiB0414
CSPI07G06190	Silver-seed gourd	carcpiB0767
CSPI07G06190	Cucumber (Chinese Long) v3	cpicucB415
CSPI07G06190	Watermelon (97103) v2	cpiwmbB542
CSPI07G06190	Watermelon (97103) v2	cpiwmbB584