CSPI07G06180 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G06180
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Phloem filament protein
Location	Chr7 : 4588562 .. 4589221 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATTTTCATTACTATCAAATATCAACTAAAGATCACAAAAAAATGACAATTGGTATTGGTGGAGGAATTGGCCTTGGTCTTCCTGGTCTCAGTATAAAGATCGGCGGAGGTATCGGTCTCGGGAGTAAAAGGCCGGGGGTCTGCAAGAGTCATGATCCATCAAAAAAATGGGTTATATGTCCCAATGATCAAGTTGTAGAAGCTGCTAAGTTTGCAGTGGCTGAGTTCAACAAAAAATATGGAAATAATCTTGTGTTTCAAGTAGTTTTGGAAGCTTGGGTTTTTACTAATCCTTGTGGGAAGAAAGAGTATAGTATTGAATTAGTAGTAATAGACGGCTGCTTGAATCGTGTTCTAAAGTTTCATGCAGTCGTGACTGAAACACCCTGTGCTGCTCGCAAGAGGACTCTGGTGTCTTTCGACCAAATCGTCGACTAAAAGAGAAGTTATATGTGCAATCAAAGTTTATACTGTGTGAGAAGTACACAATAATAAATCTTGTAGGATATTGTACTGCTCTACTTTCTTTCACTATCTGTTCTAAAATAATAATGGAGGCCAAACTACGTTTTTAGTCCCGAAACCCTATAATTTTTGTGTTTTACTTTTCATTTTGCTTCTTTACATGCACTCTTAAGTTTCTCAATTAAATTTGCA

mRNA sequence

ATGACAATTGGTATTGGTGGAGGAATTGGCCTTGGTCTTCCTGGTCTCAGTATAAAGATCGGCGGAGGTATCGGTCTCGGGAGTAAAAGGCCGGGGGTCTGCAAGAGTCATGATCCATCAAAAAAATGGGTTATATGTCCCAATGATCAAGTTGTAGAAGCTGCTAAGTTTGCAGTGGCTGAGTTCAACAAAAAATATGGAAATAATCTTGTGTTTCAAGTAGTTTTGGAAGCTTGGGTTTTTACTAATCCTTGTGGGAAGAAAGAGTATAGTATTGAATTAGTAGTAATAGACGGCTGCTTGAATCGTGTTCTAAAGTTTCATGCAGTCGTGACTGAAACACCCTGTGCTGCTCGCAAGAGGACTCTGGTGTCTTTCGACCAAATCGTCGACTAA

Coding sequence (CDS)

ATGACAATTGGTATTGGTGGAGGAATTGGCCTTGGTCTTCCTGGTCTCAGTATAAAGATCGGCGGAGGTATCGGTCTCGGGAGTAAAAGGCCGGGGGTCTGCAAGAGTCATGATCCATCAAAAAAATGGGTTATATGTCCCAATGATCAAGTTGTAGAAGCTGCTAAGTTTGCAGTGGCTGAGTTCAACAAAAAATATGGAAATAATCTTGTGTTTCAAGTAGTTTTGGAAGCTTGGGTTTTTACTAATCCTTGTGGGAAGAAAGAGTATAGTATTGAATTAGTAGTAATAGACGGCTGCTTGAATCGTGTTCTAAAGTTTCATGCAGTCGTGACTGAAACACCCTGTGCTGCTCGCAAGAGGACTCTGGTGTCTTTCGACCAAATCGTCGACTAA

Homology

[Close]

BLAST of CSPI07G06180 vs. TrEMBL
Match: A0A0A0K660_CUCSA (Phloem filament protein OS=Cucumis sativus GN=Csa_7G067370 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.8e-61
Identity = 117/128 (91.41%), Postives = 120/128 (93.75%), Query Frame = 1


Query: 4   GIGGGIGLGLPGLSIKIGGGIGLGSKRPGVCKSHDPSKKWVICPNDQVVEAAKFAVAEFN 63
           G+ GG+G G    S+KIGGGI LGSKRPG CKSHDPSKKWVICPNDQVVEAAKFAVAEFN
Sbjct: 7   GLDGGLGFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKWVICPNDQVVEAAKFAVAEFN 66

Query: 64  KKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAARKRTL 123
           KKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAARKRTL
Sbjct: 67  KKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAARKRTL 126

Query: 124 VSFDQIVD 132
           VSFDQIVD
Sbjct: 127 VSFDQIVD 134

[Close]

BLAST of CSPI07G06180 vs. TrEMBL
Match: A0A0A0K281_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067350 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.4e-53
Identity = 105/132 (79.55%), Postives = 118/132 (89.39%), Query Frame = 1


Query: 1   MTIGIGGGIGLGLPGLSIKIGGGIGLGSKRPGVCKSHDPSKKWVICPNDQVVEA-AKFAV 60
           MTIGIGGGIGLGLPGL+IKIGGGIGLG+KRPG CKSHDPSKKW +CPND+VVE  A+FAV
Sbjct: 1   MTIGIGGGIGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPNDRVVEIYARFAV 60

Query: 61  AEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAAR 120
            E+N+K+G NLVFQ VLEAWV+  PCGKKEYSIELVV +GC N VLK+HAVVTET CAAR
Sbjct: 61  DEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHAVVTETGCAAR 120

Query: 121 KRTLVSFDQIVD 132
           ++TLVSFDQI D
Sbjct: 121 RKTLVSFDQIDD 132

[Close]

BLAST of CSPI07G06180 vs. TrEMBL
Match: A0A0A0K477_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067390 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.7e-33
Identity = 83/137 (60.58%), Postives = 94/137 (68.61%), Query Frame = 1


Query: 1   MTIGIGGGIGLGL--PGLSIKIGGGIGLGSKRPGVCKSHDPSKKWVICPNDQ----VVEA 60
           MTIGIGGGIG+G+  PG+ + IGGGIG+GS++ G CKSHDPSKKW   PN Q    ++  
Sbjct: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGG-CKSHDPSKKWSQVPNAQADQVIINV 83

Query: 61  AKFAVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTET 120
           A FAVA FN+KYGN LVF  VLEAWV   P GKKEYSIELV  D CLNR L FHA+V E 
Sbjct: 84  ANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKD-CLNRCLYFHAIVIEI 143

Query: 121 PCAARKRTLVSFDQIVD 132
                   L SF QI D
Sbjct: 144 VGVPPGWNLFSFTQISD 158

[Close]

BLAST of CSPI07G06180 vs. TrEMBL
Match: E5GCR5_CUCME (Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-30
Identity = 81/136 (59.56%), Postives = 99/136 (72.79%), Query Frame = 1


Query: 1   MTIGIGGGI--GLGLPGLSIKIGGGIGLGSKRPGVCKSHDPSKKW--VICPNDQ-VVEAA 60
           MT+GIGGGI  GLG+PG++I IGGGIG+  ++ G CKSHDPSKKW  +   ND  ++E A
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGG-CKSHDPSKKWTEIKSVNDPAIIEIA 60

Query: 61  KFAVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETP 120
           KFAV  FN+K+GNNL FQ VLEAWV  +  GKKEYSIELV  D CL+R L++HAVV E  
Sbjct: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKD-CLHRCLQYHAVVIEIC 120

Query: 121 CAARKRTLVSFDQIVD 132
                  LVSF+QIV+
Sbjct: 121 GTPPGWNLVSFNQIVE 134

[Close]

BLAST of CSPI07G06180 vs. TrEMBL
Match: E5GCR6_CUCME (Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 8.4e-28
Identity = 80/137 (58.39%), Postives = 95/137 (69.34%), Query Frame = 1


Query: 1   MTIGIGG--GIGLGLPGLSIKIGGGIGLGSKRPGVCKSHDPSKKWVICPN---DQVVEAA 60
           MT+GIGG  GIG GLPG +I IGGGIG+G ++ G CKSH+PSKKW+   N     V+EAA
Sbjct: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGG-CKSHNPSKKWIQLHNVKAPDVLEAA 60

Query: 61  KFAVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETP 120
           KFAV  FNKKY NNL FQ V EAWV      +KEYSIELV  D C +R+L+FHAVV E  
Sbjct: 61  KFAVDAFNKKYENNLEFQYVTEAWVH-EVNNEKEYSIELVAKD-CFHRLLEFHAVVIEKT 120

Query: 121 CAARK-RTLVSFDQIVD 132
              +K   LVSF++I D
Sbjct: 121 VDHKKIWILVSFERIFD 134

[Close]

BLAST of CSPI07G06180 vs. NCBI nr
Match: gi|778724613|ref|XP_011658839.1| (PREDICTED: uncharacterized protein LOC105436097 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 8.3e-61
Identity = 117/128 (91.41%), Postives = 120/128 (93.75%), Query Frame = 1


Query: 4   GIGGGIGLGLPGLSIKIGGGIGLGSKRPGVCKSHDPSKKWVICPNDQVVEAAKFAVAEFN 63
           G+ GG+G G    S+KIGGGI LGSKRPG CKSHDPSKKWVICPNDQVVEAAKFAVAEFN
Sbjct: 7   GLDGGLGFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKWVICPNDQVVEAAKFAVAEFN 66

Query: 64  KKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAARKRTL 123
           KKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAARKRTL
Sbjct: 67  KKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAARKRTL 126

Query: 124 VSFDQIVD 132
           VSFDQIVD
Sbjct: 127 VSFDQIVD 134

[Close]

BLAST of CSPI07G06180 vs. NCBI nr
Match: gi|778724610|ref|XP_011658838.1| (PREDICTED: uncharacterized protein LOC105436096 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 6.4e-53
Identity = 105/132 (79.55%), Postives = 118/132 (89.39%), Query Frame = 1


Query: 1   MTIGIGGGIGLGLPGLSIKIGGGIGLGSKRPGVCKSHDPSKKWVICPNDQVVEA-AKFAV 60
           MTIGIGGGIGLGLPGL+IKIGGGIGLG+KRPG CKSHDPSKKW +CPND+VVE  A+FAV
Sbjct: 1   MTIGIGGGIGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPNDRVVEIYARFAV 60

Query: 61  AEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAAR 120
            E+N+K+G NLVFQ VLEAWV+  PCGKKEYSIELVV +GC N VLK+HAVVTET CAAR
Sbjct: 61  DEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHAVVTETGCAAR 120

Query: 121 KRTLVSFDQIVD 132
           ++TLVSFDQI D
Sbjct: 121 RKTLVSFDQIDD 132

[Close]

BLAST of CSPI07G06180 vs. NCBI nr
Match: gi|778724618|ref|XP_011658840.1| (PREDICTED: uncharacterized protein LOC105436098 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 9.5e-33
Identity = 83/137 (60.58%), Postives = 94/137 (68.61%), Query Frame = 1


Query: 1   MTIGIGGGIGLGL--PGLSIKIGGGIGLGSKRPGVCKSHDPSKKWVICPNDQ----VVEA 60
           MTIGIGGGIG+G+  PG+ + IGGGIG+GS++ G CKSHDPSKKW   PN Q    ++  
Sbjct: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGG-CKSHDPSKKWSQVPNAQADQVIINV 83

Query: 61  AKFAVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTET 120
           A FAVA FN+KYGN LVF  VLEAWV   P GKKEYSIELV  D CLNR L FHA+V E 
Sbjct: 84  ANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKD-CLNRCLYFHAIVIEI 143

Query: 121 PCAARKRTLVSFDQIVD 132
                   L SF QI D
Sbjct: 144 VGVPPGWNLFSFTQISD 158

[Close]

BLAST of CSPI07G06180 vs. NCBI nr
Match: gi|659110227|ref|XP_008455116.1| (PREDICTED: uncharacterized protein LOC103495368 [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-30
Identity = 81/136 (59.56%), Postives = 99/136 (72.79%), Query Frame = 1


Query: 1   MTIGIGGGI--GLGLPGLSIKIGGGIGLGSKRPGVCKSHDPSKKW--VICPNDQ-VVEAA 60
           MT+GIGGGI  GLG+PG++I IGGGIG+  ++ G CKSHDPSKKW  +   ND  ++E A
Sbjct: 26  MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGG-CKSHDPSKKWTEIKSVNDPAIIEIA 85

Query: 61  KFAVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETP 120
           KFAV  FN+K+GNNL FQ VLEAWV  +  GKKEYSIELV  D CL+R L++HAVV E  
Sbjct: 86  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKD-CLHRCLQYHAVVIEIC 145

Query: 121 CAARKRTLVSFDQIVD 132
                  LVSF+QIV+
Sbjct: 146 GTPPGWNLVSFNQIVE 159

[Close]

BLAST of CSPI07G06180 vs. NCBI nr
Match: gi|307136458|gb|ADN34263.1| (phloem filament protein [Cucumis melo subsp. melo])

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-30
Identity = 81/136 (59.56%), Postives = 99/136 (72.79%), Query Frame = 1


Query: 1   MTIGIGGGI--GLGLPGLSIKIGGGIGLGSKRPGVCKSHDPSKKW--VICPNDQ-VVEAA 60
           MT+GIGGGI  GLG+PG++I IGGGIG+  ++ G CKSHDPSKKW  +   ND  ++E A
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGG-CKSHDPSKKWTEIKSVNDPAIIEIA 60

Query: 61  KFAVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETP 120
           KFAV  FN+K+GNNL FQ VLEAWV  +  GKKEYSIELV  D CL+R L++HAVV E  
Sbjct: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKD-CLHRCLQYHAVVIEIC 120

Query: 121 CAARKRTLVSFDQIVD 132
                  LVSF+QIV+
Sbjct: 121 GTPPGWNLVSFNQIVE 134

The following BLAST results are available for this feature:

BLAST of CSPI07G06180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G06180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K660_CUCSA	5.8e-61	91.41	Phloem filament protein OS=Cucumis sativus GN=Csa_7G067370 PE=4 SV=1	[more]
A0A0A0K281_CUCSA	4.4e-53	79.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067350 PE=4 SV=1	[more]
A0A0A0K477_CUCSA	6.7e-33	60.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067390 PE=4 SV=1	[more]
E5GCR5_CUCME	1.4e-30	59.56	Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCR6_CUCME	8.4e-28	58.39	Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of CSPI07G06180 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G06180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724613\|ref\|XP_011658839.1\|	8.3e-61	91.41	PREDICTED: uncharacterized protein LOC105436097 [Cucumis sativus]	[more]
gi\|778724610\|ref\|XP_011658838.1\|	6.4e-53	79.55	PREDICTED: uncharacterized protein LOC105436096 [Cucumis sativus]	[more]
gi\|778724618\|ref\|XP_011658840.1\|	9.5e-33	60.58	PREDICTED: uncharacterized protein LOC105436098 [Cucumis sativus]	[more]
gi\|659110227\|ref\|XP_008455116.1\|	2.0e-30	59.56	PREDICTED: uncharacterized protein LOC103495368 [Cucumis melo]	[more]
gi\|307136458\|gb\|ADN34263.1\|	2.0e-30	59.56	phloem filament protein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR020381	Proteinase inhibitor I25, cystatin, conserved region

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G06180.1	CSPI07G06180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020381	Proteinase inhibitor I25, cystatin, conserved region	PFAM	PF16845	SQAPI	coord: 48..128 score: 1.
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 48..125 score: 3.
None	No IPR available	unknown	SSF54403	Cystatin/monellin	coord: 48..129 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G06180	Cucumber (Gy14) v2	cgybcpiB332
CSPI07G06180	Silver-seed gourd	carcpiB0323
CSPI07G06180	Silver-seed gourd	carcpiB0414
CSPI07G06180	Silver-seed gourd	carcpiB0767
CSPI07G06180	Cucumber (Chinese Long) v3	cpicucB415
CSPI07G06180	Watermelon (97103) v2	cpiwmbB542
CSPI07G06180	Watermelon (97103) v2	cpiwmbB584
CSPI07G06180	Wax gourd	cpiwgoB659
CSPI07G06180	Wax gourd	cpiwgoB672
CSPI07G06180	Cucumber (Gy14) v1	cgycpiB336
CSPI07G06180	Cucurbita maxima (Rimu)	cmacpiB143
CSPI07G06180	Cucurbita maxima (Rimu)	cmacpiB534
CSPI07G06180	Cucurbita moschata (Rifu)	cmocpiB136
CSPI07G06180	Cucurbita moschata (Rifu)	cmocpiB525
CSPI07G06180	Cucurbita moschata (Rifu)	cmocpiB777
CSPI07G06180	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G06180	Melon (DHL92) v3.5.1	cpimeB538
CSPI07G06180	Watermelon (Charleston Gray)	cpiwcgB541
CSPI07G06180	Watermelon (Charleston Gray)	cpiwcgB561
CSPI07G06180	Watermelon (97103) v1	cpiwmB574
CSPI07G06180	Watermelon (97103) v1	cpiwmB594
CSPI07G06180	Cucurbita pepo (Zucchini)	cpecpiB258
CSPI07G06180	Cucurbita pepo (Zucchini)	cpecpiB472
CSPI07G06180	Cucurbita pepo (Zucchini)	cpecpiB697
CSPI07G06180	Bottle gourd (USVL1VR-Ls)	cpilsiB534
CSPI07G06180	Bottle gourd (USVL1VR-Ls)	cpilsiB536
CSPI07G06180	Melon (DHL92) v3.6.1	cpimedB558
CSPI07G06180	Melon (DHL92) v3.6.1	cpimedB523