CSPI07G05950 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G05950
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 4457858 .. 4460187 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGGTTTGGGGTTGCACTTAGTCCTAGCCGAGCCAAGCCCATCCCACCCCATCCTGAACCATATGTGTCTACGAGCAGAAGAGGTTCAGAATGTGATCATAGTTTCACACCAGTCAGATAAAGTGAGATGAACATGATATCTATATAATCAAACACAATTATCTCTATTAATATCATATGATTATGAAGATATTTGGAGGATGTCTTGTCCTAACAAGGGTTACTCCAGCCACAGGCTTCTCTCAATCTTGGGTTAATAAGTTTTGGTCTAATCTTACCTCTGACACTAACTATAACTAGTTGTTGACAAACAGAAAGATTTCCTTTTAGAACAGCTATTTTTGCCATGGCATATTTCCAATGGTCTGAGCACATTACCATTTGAATATTCAGGTTGATTTGCTGATAGAAGAAAACAAGAGATTGAACCAGCTTGTGAGTTTCACAAACCATGTTAATATTTTTTTATTTTTAGTGTTTGTAAAAGGGAAAATTAATGATTGAAGTTTTGTTGTCTGTGGTAGGAAGTGGACAAATTGGGAGAGCAAATAATGCAGAACATACAAGGACATTCTTCTGAGTCTATAGGGAATAATTCAACTTCATCAAATAACCCTTCTCAAGATTATGACAGCTCTGACACTTCTCTCAAACTGGGGTTAGTTTAATTTTCAAACTATTCCAAAGTTCTTCTTTCTTGAGGATTTGTTTGGTATATATTATGTATTGTTTATTAGTTTCGGTCAAAGTCAATCGAAATGGATCCTACGAGGGTAAGATATATAAGATATATGAGCTACTTTGATTAATTAAAACATTAATTTGCATCTAAAATTTACGTTTCTTTTTCATAAATACATATTTTAAGTCTCGTTTCATAACTACGCTACGTTATATTTTTTTAAAACGTATTCTACAAAAGCTTTCTTTCATTACTTTGGTTTTCAGAATTTGGATAATCATGTTTAAATATTTACTAAACAAGATCATAGTTTTTCTTCGAGAATTTTCTTATACATAATTATGAATTTATTTTGAAAATGATCCCTTGAATGTGTAAAATAAATTCCAAAAGTATATTGTTGATAGATATTTTCTTGGGCACTCGTGCTAACAATTTCGTTTTCGTTTTTTTTTTTTAAAAAAATCAAGTCTATTTCCTCTCTCTTTTTTTTTTTTTTACCATAGTTTACATCTAACAAAATTTTAAAACTAGTTGACTTGGTTTAGGAAAAAGTAAAAAGTCGGTTACTTGGACGTAAAAGAAGTTTTTATAGGCTTTTTTAAACTAAAAACGTAAACCTAAGGTTTCGTTTGGTAATGGTTTTGTTCTTTGTTTTTAAAATTAAGCCAATAGTGATAGAAAATTAGGCATAGGGGCAACGAAAAATAATATCCTAATTGTAATGATTAACATCATGAAACCCTAAAATAAATTGAAAATCTGTTAACTCAAAATTCTCTTCACATGAACTCGACCGGATCACCACTAGAATTTTCTGCTATTCTTTGGACTCAATCATATTGTGGGACCCGATGAATGAAGAAACCGGGATAGAGAAAGAGATGGAAAATAAGGAGGAAGGATTTTTCTGGTGAAATTGGGCTTTTAGTGCTTGAGAGAGGTTCTTCTGAAGAACAATTTCAGCAGCCCAAAATTTCTAAACATTGCCTTTCAAATATAGAAAGGTGTAAATTATTATAGAAAATAGACTTAATTTTCAAAAACTAAAAACAAATAACGATATGAACCAAAAGGACAGTAAAGAAGAATCAATACAAGCAACTAGTTAACCTAATTGGGTGCAACATCGGGGCTATGCCCAATTGAGAAGATTGAAATATTCACTAGAATTATTAAAAAGATTACAAGTACACAACTTATATCCTTTTAATACACACTAGAAAATCACTTGGGCTCAACGTGAATCAATAACCTAATCAAACAACCATATATAAGAATCAACTATATGCTTATTGTATTTAAGATTAACATAAAATATTAAAGAATATGATCAACTGGTGCAGACCTAATAATTAATTATACATCCAAACCCAAATTTTACTTTGTAAACTGTGTTATAATTAATTACTAACAGCCTTGATTGTTCTTCTATTATAATCATTATTATTTTGAGTTGTTGTTGTTGCAGATTGCCATTGCTTGATTTTTGAATTATATGGCTGAAGATTGGCATCTGAATCAACCCAAAAGATCAGCTATTTACCATTTGGAAAATAGTTCATTTGGTAAATATATATATCTATATATATATAGAGTCTGAAAAAAAAAAAGAATGATAAATAAGGTAGGATTAAGTGAGCA

mRNA sequence

ATGAGGGGTTTGGGGTTGCACTTAGTCCTAGCCGAGCCAAGCCCATCCCACCCCATCCTGAACCATATGTGTCTACGAGCAGAAGAGGTTCAGAATGTGATCATAGTTTCACACCAGTCAGATAAAGTTGATTTGCTGATAGAAGAAAACAAGAGATTGAACCAGCTTGAAGTGGACAAATTGGGAGAGCAAATAATGCAGAACATACAAGGACATTCTTCTGAGTCTATAGGGAATAATTCAACTTCATCAAATAACCCTTCTCAAGATTATGACAGCTCTGACACTTCTCTCAAACTGGGATTGCCATTGCTTGATTTTTGA

Coding sequence (CDS)

ATGAGGGGTTTGGGGTTGCACTTAGTCCTAGCCGAGCCAAGCCCATCCCACCCCATCCTGAACCATATGTGTCTACGAGCAGAAGAGGTTCAGAATGTGATCATAGTTTCACACCAGTCAGATAAAGTTGATTTGCTGATAGAAGAAAACAAGAGATTGAACCAGCTTGAAGTGGACAAATTGGGAGAGCAAATAATGCAGAACATACAAGGACATTCTTCTGAGTCTATAGGGAATAATTCAACTTCATCAAATAACCCTTCTCAAGATTATGACAGCTCTGACACTTCTCTCAAACTGGGATTGCCATTGCTTGATTTTTGA
Homology
[Close]
BLAST of CSPI07G05950 vs. NCBI nr
Match: gi|778724526|ref|XP_004136891.2| (PREDICTED: MADS-box protein SVP-like [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-26
Identity = 68/77 (88.31%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 31  QNVIIVSHQSDKVDLLIEENKRLNQLEVDKLGEQIMQNIQGHSSESIGNNSTSSNNPSQD 90
           +N  ++S    KVDLLIEENKRLNQLEVDKLGEQIMQNIQGHSSESIGNNSTSSNNPSQD
Sbjct: 145 KNTDLLSDIGRKVDLLIEENKRLNQLEVDKLGEQIMQNIQGHSSESIGNNSTSSNNPSQD 204

Query: 91  YDSSDTSLKLGLPLLDF 108
           YDSSDTSLKLGLPLLDF
Sbjct: 205 YDSSDTSLKLGLPLLDF 221

[Close]
BLAST of CSPI07G05950 vs. NCBI nr
Match: gi|659110273|ref|XP_008455140.1| (PREDICTED: MADS-box protein SVP-like isoform X1 [Cucumis melo])

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-22
Identity = 62/78 (79.49%), Postives = 71/78 (91.03%), Query Frame = 1 

Query: 31  QNVIIVSHQSDKVDLLIEENKRLNQLEVDKLGEQI-MQNIQGHSSESIGNNSTSSNNPSQ 90
           +N  ++S    KVDLLIEENKRLN+LEV+K+GEQI MQNIQG+SSES+GNNSTSSNNPSQ
Sbjct: 145 KNSELLSVIGRKVDLLIEENKRLNELEVEKMGEQIIMQNIQGNSSESVGNNSTSSNNPSQ 204

Query: 91  DYDSSDTSLKLGLPLLDF 108
           DYDSSDTSLKLGLPLLD+
Sbjct: 205 DYDSSDTSLKLGLPLLDY 222

[Close]
BLAST of CSPI07G05950 vs. NCBI nr
Match: gi|659110275|ref|XP_008455141.1| (PREDICTED: MADS-box protein JOINTLESS-like isoform X2 [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 46/56 (82.14%), Postives = 53/56 (94.64%), Query Frame = 1 

Query: 53  LNQLEVDKLGEQI-MQNIQGHSSESIGNNSTSSNNPSQDYDSSDTSLKLGLPLLDF 108
           + + EV+K+GEQI MQNIQG+SSES+GNNSTSSNNPSQDYDSSDTSLKLGLPLLD+
Sbjct: 153 IGRKEVEKMGEQIIMQNIQGNSSESVGNNSTSSNNPSQDYDSSDTSLKLGLPLLDY 208

The following BLAST results are available for this feature:
BLAST of CSPI07G05950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G05950 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI07G05950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G05950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778724526|ref|XP_004136891.2|2.4e-2688.31PREDICTED: MADS-box protein SVP-like [Cucumis sativus][more]
gi|659110273|ref|XP_008455140.1|3.6e-2279.49PREDICTED: MADS-box protein SVP-like isoform X1 [Cucumis melo][more]
gi|659110275|ref|XP_008455141.1|1.3e-1482.14PREDICTED: MADS-box protein JOINTLESS-like isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G05950.1CSPI07G05950.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G05950Cucsa.218320Cucumber (Gy14) v1cgycpiB336
CSPI07G05950CsGy7G005650Cucumber (Gy14) v2cgybcpiB332
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G05950Melon (DHL92) v3.6.1cpimedB523
CSPI07G05950Silver-seed gourdcarcpiB0321
CSPI07G05950Silver-seed gourdcarcpiB0323
CSPI07G05950Silver-seed gourdcarcpiB0767
CSPI07G05950Cucumber (Chinese Long) v3cpicucB415
CSPI07G05950Watermelon (97103) v2cpiwmbB584
CSPI07G05950Watermelon (97103) v2cpiwmbB601
CSPI07G05950Wax gourdcpiwgoB672
CSPI07G05950Wax gourdcpiwgoB686
CSPI07G05950Cucurbita maxima (Rimu)cmacpiB143
CSPI07G05950Cucurbita maxima (Rimu)cmacpiB153
CSPI07G05950Cucurbita maxima (Rimu)cmacpiB534
CSPI07G05950Cucurbita maxima (Rimu)cmacpiB540
CSPI07G05950Cucurbita moschata (Rifu)cmocpiB133
CSPI07G05950Cucurbita moschata (Rifu)cmocpiB525
CSPI07G05950Cucurbita moschata (Rifu)cmocpiB532
CSPI07G05950Cucumber (Chinese Long) v2cpicuB354
CSPI07G05950Melon (DHL92) v3.5.1cpimeB538
CSPI07G05950Watermelon (Charleston Gray)cpiwcgB541
CSPI07G05950Watermelon (Charleston Gray)cpiwcgB557
CSPI07G05950Watermelon (97103) v1cpiwmB574
CSPI07G05950Watermelon (97103) v1cpiwmB575
CSPI07G05950Watermelon (97103) v1cpiwmB589
CSPI07G05950Cucurbita pepo (Zucchini)cpecpiB258
CSPI07G05950Cucurbita pepo (Zucchini)cpecpiB265
CSPI07G05950Cucurbita pepo (Zucchini)cpecpiB694
CSPI07G05950Cucurbita pepo (Zucchini)cpecpiB697
CSPI07G05950Bottle gourd (USVL1VR-Ls)cpilsiB531
CSPI07G05950Bottle gourd (USVL1VR-Ls)cpilsiB536