CSPI07G05770 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G05770
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 4320457 .. 4321236 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCTCTCCTCGCGATCTCCGCCAAATCCAACGGCTCATTCTCTTCCCCTTTTCCTTTATATCTTCCCCTTCCCCTTCCCCCTTTTCTCCTCACCGAACACAAAACAGAAATCAAATCTTCTTCTTCTTCTTCTTCTTCTCAAACTCTTTCTCTCATAATCTCAATGGCTTCAAGAAGCTTCCTCGTTCTTCTTCTAGTGCTCGCTTTGGTAGCCTCTTCCGCTACGGCAGGGCATCATCATTCACACCCCAAGTCCCCGGCCCCTGCACCTTCTCCAGCCATTGTGGAAGCTCCGTCGGTTCCGCCGTCTTCGATTTCCGGGACTCCTGTTGAGGCGCCTGCTCCGGCAGCAAACGGCGCCGGTCTTGTTTCTGGATCAATGGCTGTTAGTGTTGGGATCTTTTTTGCTGCTGCTTTGTTTGTTTAGATTCTTTTTTCTTGACTAATATTGGTTTTTGTTTACGAAGATGGAATTTAGTTATTTGTTTTATCATATTTATTTGATTTTATTGGTTTATATCACAGTTTGATTATGAGTATCATATTTAATTCTGTGTTTATTTTGGTTTTGTTCAATTTATTTAGTTATATAGATTGCTCAAACTTTCCATTTAACTGCTGAGGATGAAAGTACACCAAAAATGGAAAAGAAGTATCATTAAAATTATAATCCCATCCCTCAATAGCAAGTTTTCTGCTTAGTTTTGTAGCATCAATCCATCCACATTTATGTGAATGCTTATCATTGATTGATATTCTATCAAGTCTAATTAAGTTGGC

mRNA sequence

CCTCTCCTCGCGATCTCCGCCAAATCCAACGGCTCATTCTCTTCCCCTTTTCCTTTATATCTTCCCCTTCCCCTTCCCCCTTTTCTCCTCACCGAACACAAAACAGAAATCAAATCTTCTTCTTCTTCTTCTTCTTCTCAAACTCTTTCTCTCATAATCTCAATGGCTTCAAGAAGCTTCCTCGTTCTTCTTCTAGTGCTCGCTTTGGTAGCCTCTTCCGCTACGGCAGGGCATCATCATTCACACCCCAAGTCCCCGGCCCCTGCACCTTCTCCAGCCATTGTGGAAGCTCCGTCGGTTCCGCCGTCTTCGATTTCCGGGACTCCTGTTGAGGCGCCTGCTCCGGCAGCAAACGGCGCCGGTCTTGTTTCTGGATCAATGGCTGTTAGTGTTGGGATCTTTTTTGCTGCTGCTTTGTTTGTTTAG

Coding sequence (CDS)

CCTCTCCTCGCGATCTCCGCCAAATCCAACGGCTCATTCTCTTCCCCTTTTCCTTTATATCTTCCCCTTCCCCTTCCCCCTTTTCTCCTCACCGAACACAAAACAGAAATCAAATCTTCTTCTTCTTCTTCTTCTTCTCAAACTCTTTCTCTCATAATCTCAATGGCTTCAAGAAGCTTCCTCGTTCTTCTTCTAGTGCTCGCTTTGGTAGCCTCTTCCGCTACGGCAGGGCATCATCATTCACACCCCAAGTCCCCGGCCCCTGCACCTTCTCCAGCCATTGTGGAAGCTCCGTCGGTTCCGCCGTCTTCGATTTCCGGGACTCCTGTTGAGGCGCCTGCTCCGGCAGCAAACGGCGCCGGTCTTGTTTCTGGATCAATGGCTGTTAGTGTTGGGATCTTTTTTGCTGCTGCTTTGTTTGTTTAG
Homology
[Close]
BLAST of CSPI07G05770 vs. TrEMBL
Match: A0A0A0K427_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G064050 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 8.5e-34
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 55  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAIVEAPSVPPSSISGTPVEAPA 114
           MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPA+VEAPSVPPSSISGTPVEAPA
Sbjct: 1   MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60

Query: 115 PAANGAGLVSGSMAVSVGIFFAAALFV 142
           PAANGAGLVSGSMAVSVGIFFAAALFV
Sbjct: 61  PAANGAGLVSGSMAVSVGIFFAAALFV 87

[Close]
BLAST of CSPI07G05770 vs. NCBI nr
Match: gi|700188511|gb|KGN43744.1| (hypothetical protein Csa_7G064050 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-33
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 55  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAIVEAPSVPPSSISGTPVEAPA 114
           MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPA+VEAPSVPPSSISGTPVEAPA
Sbjct: 1   MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60

Query: 115 PAANGAGLVSGSMAVSVGIFFAAALFV 142
           PAANGAGLVSGSMAVSVGIFFAAALFV
Sbjct: 61  PAANGAGLVSGSMAVSVGIFFAAALFV 87

[Close]
BLAST of CSPI07G05770 vs. NCBI nr
Match: gi|659110322|ref|XP_008455166.1| (PREDICTED: classical arabinogalactan protein 10-like [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-30
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 55  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAIVEAPSVPPSSISGTPVEAPA 114
           MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPA+VEAPSVPPSSISGTPVEAPA
Sbjct: 1   MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60

Query: 115 PAANGAGLVSGSMAVSVGIFFAAALFV 142
           PAA+GAG VSGSMAVSVGI FAAALFV
Sbjct: 61  PAASGAGFVSGSMAVSVGI-FAAALFV 86

The following BLAST results are available for this feature:
BLAST of CSPI07G05770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G05770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K427_CUCSA8.5e-3498.85Uncharacterized protein OS=Cucumis sativus GN=Csa_7G064050 PE=4 SV=1[more]
BLAST of CSPI07G05770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G05770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188511|gb|KGN43744.1|1.2e-3398.85hypothetical protein Csa_7G064050 [Cucumis sativus][more]
gi|659110322|ref|XP_008455166.1|1.6e-3095.40PREDICTED: classical arabinogalactan protein 10-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G05770.1CSPI07G05770.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G05770CsaV3_7G006760Cucumber (Chinese Long) v3cpicucB415
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G05770Melon (DHL92) v3.6.1cpimedB523
CSPI07G05770Cucumber (Gy14) v2cgybcpiB332
CSPI07G05770Silver-seed gourdcarcpiB0323
CSPI07G05770Watermelon (97103) v2cpiwmbB584
CSPI07G05770Wax gourdcpiwgoB672
CSPI07G05770Cucumber (Gy14) v1cgycpiB336
CSPI07G05770Cucurbita maxima (Rimu)cmacpiB143
CSPI07G05770Cucurbita maxima (Rimu)cmacpiB534
CSPI07G05770Cucurbita moschata (Rifu)cmocpiB525
CSPI07G05770Cucumber (Chinese Long) v2cpicuB354
CSPI07G05770Melon (DHL92) v3.5.1cpimeB538
CSPI07G05770Watermelon (Charleston Gray)cpiwcgB541
CSPI07G05770Watermelon (97103) v1cpiwmB575
CSPI07G05770Cucurbita pepo (Zucchini)cpecpiB258
CSPI07G05770Cucurbita pepo (Zucchini)cpecpiB697
CSPI07G05770Bottle gourd (USVL1VR-Ls)cpilsiB536