CSPI07G05000 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G05000
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	O-acyltransferase WSD1
Location	Chr7 : 3708593 .. 3709204 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTTCTCTCTTACAGCAACCACCAAGTCCTATTGCTGAATACTTAAGCTCCCCCATGCTCTCTCTTTCGATTCTAGCCATCTTGGAATTTCAAGTCCCAATTCACACCTTGGATCTCACTTTCAATCTCCGCAGCCTCTTCCTCCCCATCAACCCTCGGTTTTCCTCCGTATTGGTAATATGAAGAAAAGATTGTACCTGTCAACTTAAACTCTTAAGTTTTGTTTACATATACAATAGTTTAATATCGTATTGTATCATGTCAAGAGACCTAACTTGCATTCAAAACCATTGGAACATCATTTTTCGTTTTGACTCTATGGACATGAGTTGAGTAGTGAGTTTAATTTATTTGTGTCGAAACACTATGTCATGTATTCAAACTCATGACATATTTTTCTGATTATTGTTGAATCTTATGTTGATGAAAACATATATGTTCAGTTGAAGTTGAATCTTAGTGACGGCTTAACTTTATCTTCTCTTCTCAACTTGTATCGAATGACAGGCTACAAATGAGAAAGGAGAGAAGAAGTGGAAAAAGGTAAACATAGAAGTGGATGAACATGTGAAAGATCCAATCTATCCACCTGGTTTAACTATATAG

mRNA sequence

ATGGATTCTTCTCTCTTACAGCAACCACCAAGTCCTATTGCTGAATACTTAAGCTCCCCCATGCTCTCTCTTTCGATTCTAGCCATCTTGGAATTTCAAGTCCCAATTCACACCTTGGATCTCACTTTCAATCTCCGCAGCCTCTTCCTCCCCATCAACCCTCGGTTTTCCTCCGTATTGGCTACAAATGAGAAAGGAGAGAAGAAGTGGAAAAAGGTAAACATAGAAGTGGATGAACATGTGAAAGATCCAATCTATCCACCTGGTTTAACTATATAG

Coding sequence (CDS)

ATGGATTCTTCTCTCTTACAGCAACCACCAAGTCCTATTGCTGAATACTTAAGCTCCCCCATGCTCTCTCTTTCGATTCTAGCCATCTTGGAATTTCAAGTCCCAATTCACACCTTGGATCTCACTTTCAATCTCCGCAGCCTCTTCCTCCCCATCAACCCTCGGTTTTCCTCCGTATTGGCTACAAATGAGAAAGGAGAGAAGAAGTGGAAAAAGGTAAACATAGAAGTGGATGAACATGTGAAAGATCCAATCTATCCACCTGGTTTAACTATATAG

Homology

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BLAST of CSPI07G05000 vs. TrEMBL
Match: A0A0A0K3V2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G051340 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.1e-21
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1


Query: 1  MDSSLLQQPPSPIAEYLSSPMLSLSILAILEFQVPIHTLDLTFNLRSLFLPINPRF 57
          MDSSLLQQPPSPIAEYLSSPMLSLSILAILEFQVPIHTLDLTFNLRSLFLPINPRF
Sbjct: 1  MDSSLLQQPPSPIAEYLSSPMLSLSILAILEFQVPIHTLDLTFNLRSLFLPINPRF 56

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BLAST of CSPI07G05000 vs. TrEMBL
Match: A0A165Z510_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013021 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-16
Identity = 42/81 (51.85%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 9  PPSPIAEYLSSPMLSLSILAILEFQVPIHTLDLTFNLRSLFLPINPRFSSVLATNEKGEK 68
          P SP  +YL+S +LSL+I+A+LEF+VPIH L     L++LF+PIN RFSS++   + G K
Sbjct: 10 PVSPSGQYLNSSVLSLTIVAVLEFEVPIHDLQTVSLLKNLFIPINQRFSSIMVGEKNGAK 69

Query: 69 KWKKVNIEVDEHVKDPIYPPG 90
          KWKKV + + +HV+ PI+P G
Sbjct: 70 KWKKVEVNIKDHVRVPIFPAG 90

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BLAST of CSPI07G05000 vs. TrEMBL
Match: A0A067JJN5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25769 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-16
Identity = 41/90 (45.56%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 2  DSSLLQQPPSPIAEYLSSPMLSLSILAILEFQVPIHTLDLTFNLRSLFLPINPRFSSVLA 61
          +  ++ +P SP  +YLS+ +LSL I++++E QVPI        L+ +FLPINPRFSSV+ 
Sbjct: 4  EQEVILEPVSPTGQYLSNSVLSLCIISVVESQVPIDDSQAMSLLKDVFLPINPRFSSVMV 63

Query: 62 TNEKGEKKWKKVNIEVDEHVKDPIYPPGLT 92
           N+ GEK+WKKV +++ +H+K PI+P G++
Sbjct: 64 MNKDGEKRWKKVEVQLKDHIKVPIFPTGMS 93

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BLAST of CSPI07G05000 vs. TrEMBL
Match: V7B172_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G042500g PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.9e-16
Identity = 40/87 (45.98%), Postives = 62/87 (71.26%), Query Frame = 1


Query: 6  LQQPPSPIAEYLSSPMLSLSILAILEFQVPIHTLDLTFNLRSLFLPINPRFSSVLATNEK 65
          L +P SP+ +Y +S +L + I+ +LEF VPI  L     LR +FLPINPRFSS++  +++
Sbjct: 8  LAEPVSPVGQYFNSSVLCIYIIGVLEFDVPIDDLQTYALLRDVFLPINPRFSSIMVQDKE 67

Query: 66 GEKKWKKVNIEVDEHVKDPIYPPGLTI 93
          GEK+WK+V++ + +HV  PI+P G T+
Sbjct: 68 GEKQWKQVDVNLKDHVNIPIFPEGKTV 94

[Close]

BLAST of CSPI07G05000 vs. TrEMBL
Match: A0A0L9U2G3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g025800 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.9e-16
Identity = 40/87 (45.98%), Postives = 62/87 (71.26%), Query Frame = 1


Query: 6  LQQPPSPIAEYLSSPMLSLSILAILEFQVPIHTLDLTFNLRSLFLPINPRFSSVLATNEK 65
          L +P SP+ +Y +S +L + I+ +LEF+VPI  L     L+ +FLPINPRFSS++  ++ 
Sbjct: 8  LAEPVSPVGQYFNSSVLCIYIIGVLEFEVPIDDLQTYALLQDVFLPINPRFSSIMVQDKN 67

Query: 66 GEKKWKKVNIEVDEHVKDPIYPPGLTI 93
          GEK+WKKV++ + +HV  PI+P G T+
Sbjct: 68 GEKQWKKVDVNLKDHVHIPIFPEGKTV 94

[Close]

BLAST of CSPI07G05000 vs. NCBI nr
Match: gi|659111023|ref|XP_008455536.1| (PREDICTED: O-acyltransferase WSD1-like [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-37
Identity = 80/92 (86.96%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 1  MDSSLLQQPPSPIAEYLSSPMLSLSILAILEFQVPIHTLDLTFNLRSLFLPINPRFSSVL 60
          MDSSLLQQP SPIAEYLSSPMLSLS+LAILEFQVPIHTLDL  NLR+LFLPINPRFSS+L
Sbjct: 1  MDSSLLQQPLSPIAEYLSSPMLSLSVLAILEFQVPIHTLDLAPNLRNLFLPINPRFSSIL 60

Query: 61 ATNEKGEKKWKKVNIEVDEHVKDPIYPPGLTI 93
           TNE+GEKKWK+VN+EV+EHVKDPI+PPGLTI
Sbjct: 61 VTNEQGEKKWKRVNVEVEEHVKDPIFPPGLTI 92

[Close]

BLAST of CSPI07G05000 vs. NCBI nr
Match: gi|700188421|gb|KGN43654.1| (hypothetical protein Csa_7G051340 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 5.9e-21
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1


Query: 1  MDSSLLQQPPSPIAEYLSSPMLSLSILAILEFQVPIHTLDLTFNLRSLFLPINPRF 57
          MDSSLLQQPPSPIAEYLSSPMLSLSILAILEFQVPIHTLDLTFNLRSLFLPINPRF
Sbjct: 1  MDSSLLQQPPSPIAEYLSSPMLSLSILAILEFQVPIHTLDLTFNLRSLFLPINPRF 56

[Close]

BLAST of CSPI07G05000 vs. NCBI nr
Match: gi|1021041836|gb|KZM99617.1| (hypothetical protein DCAR_013021 [Daucus carota subsp. sativus])

HSP 1 Score: 93.2 bits (230), Expect = 2.6e-16
Identity = 42/81 (51.85%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 9  PPSPIAEYLSSPMLSLSILAILEFQVPIHTLDLTFNLRSLFLPINPRFSSVLATNEKGEK 68
          P SP  +YL+S +LSL+I+A+LEF+VPIH L     L++LF+PIN RFSS++   + G K
Sbjct: 10 PVSPSGQYLNSSVLSLTIVAVLEFEVPIHDLQTVSLLKNLFIPINQRFSSIMVGEKNGAK 69

Query: 69 KWKKVNIEVDEHVKDPIYPPG 90
          KWKKV + + +HV+ PI+P G
Sbjct: 70 KWKKVEVNIKDHVRVPIFPAG 90

[Close]

BLAST of CSPI07G05000 vs. NCBI nr
Match: gi|802752486|ref|XP_012088260.1| (PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas])

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-16
Identity = 41/90 (45.56%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 2  DSSLLQQPPSPIAEYLSSPMLSLSILAILEFQVPIHTLDLTFNLRSLFLPINPRFSSVLA 61
          +  ++ +P SP  +YLS+ +LSL I++++E QVPI        L+ +FLPINPRFSSV+ 
Sbjct: 4  EQEVILEPVSPTGQYLSNSVLSLCIISVVESQVPIDDSQAMSLLKDVFLPINPRFSSVMV 63

Query: 62 TNEKGEKKWKKVNIEVDEHVKDPIYPPGLT 92
           N+ GEK+WKKV +++ +H+K PI+P G++
Sbjct: 64 MNKDGEKRWKKVEVQLKDHIKVPIFPTGMS 93

[Close]

BLAST of CSPI07G05000 vs. NCBI nr
Match: gi|1009165310|ref|XP_015900964.1| (PREDICTED: O-acyltransferase WSD1-like [Ziziphus jujuba])

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-16
Identity = 43/92 (46.74%), Postives = 66/92 (71.74%), Query Frame = 1


Query: 1  MDSSLLQQPPSPIAEYLSSPMLSLSILAILEFQVPIHTLDLTFNLRSLFLPINPRFSSVL 60
          M+     +P SP  +YL+S +LSLSI+A+LE  V I+       L +LFLPINPRFSS++
Sbjct: 1  MEFGETMEPVSPTGQYLNSSVLSLSIIAVLEIGVTINDSQTMSLLENLFLPINPRFSSIM 60

Query: 61 ATNEKGEKKWKKVNIEVDEHVKDPIYPPGLTI 93
            ++ GEK+WKKV +++++HVK P++P GL++
Sbjct: 61 VDDKNGEKRWKKVEVKLEDHVKVPLFPSGLSL 92

The following BLAST results are available for this feature:

BLAST of CSPI07G05000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G05000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3V2_CUCSA	4.1e-21	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G051340 PE=4 SV=1	[more]
A0A165Z510_DAUCA	1.8e-16	51.85	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013021 PE=4 SV=1	[more]
A0A067JJN5_JATCU	2.3e-16	45.56	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25769 PE=4 SV=1	[more]
V7B172_PHAVU	8.9e-16	45.98	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G042500g PE=4 SV=1	[more]
A0A0L9U2G3_PHAAN	8.9e-16	45.98	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g025800 PE=4 SV=1	[more]

BLAST of CSPI07G05000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G05000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111023\|ref\|XP_008455536.1\|	1.2e-37	86.96	PREDICTED: O-acyltransferase WSD1-like [Cucumis melo]	[more]
gi\|700188421\|gb\|KGN43654.1\|	5.9e-21	100.00	hypothetical protein Csa_7G051340 [Cucumis sativus]	[more]
gi\|1021041836\|gb\|KZM99617.1\|	2.6e-16	51.85	hypothetical protein DCAR_013021 [Daucus carota subsp. sativus]	[more]
gi\|802752486\|ref\|XP_012088260.1\|	3.4e-16	45.56	PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]	[more]
gi\|1009165310\|ref\|XP_015900964.1\|	3.4e-16	46.74	PREDICTED: O-acyltransferase WSD1-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016746	transferase activity, transferring acyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G05000.1	CSPI07G05000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31650	FAMILY NOT NAMED	coord: 7..92 score: 9.6
None	No IPR available	PANTHER	PTHR31650:SF7	SUBFAMILY NOT NAMED	coord: 7..92 score: 9.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G05000	Csa7G051310	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G05000	MELO3C018693	Melon (DHL92) v3.5.1	cpimeB534
CSPI07G05000	MELO3C018693.2	Melon (DHL92) v3.6.1	cpimedB518

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G05000	Cucumber (Gy14) v1	cgycpiB330
CSPI07G05000	Cucumber (Gy14) v1	cgycpiB512
CSPI07G05000	Cucurbita maxima (Rimu)	cmacpiB144
CSPI07G05000	Cucurbita maxima (Rimu)	cmacpiB533
CSPI07G05000	Cucurbita moschata (Rifu)	cmocpiB131
CSPI07G05000	Cucurbita moschata (Rifu)	cmocpiB524
CSPI07G05000	Melon (DHL92) v3.5.1	cpimeB538
CSPI07G05000	Watermelon (Charleston Gray)	cpiwcgB596
CSPI07G05000	Watermelon (97103) v1	cpiwmB604
CSPI07G05000	Cucurbita pepo (Zucchini)	cpecpiB257
CSPI07G05000	Cucurbita pepo (Zucchini)	cpecpiB692
CSPI07G05000	Bottle gourd (USVL1VR-Ls)	cpilsiB512
CSPI07G05000	Bottle gourd (USVL1VR-Ls)	cpilsiB519
CSPI07G05000	Melon (DHL92) v3.6.1	cpimedB510
CSPI07G05000	Melon (DHL92) v3.6.1	cpimedB523
CSPI07G05000	Cucumber (Gy14) v2	cgybcpiB196
CSPI07G05000	Cucumber (Gy14) v2	cgybcpiB332
CSPI07G05000	Cucumber (Chinese Long) v3	cpicucB382
CSPI07G05000	Cucumber (Chinese Long) v3	cpicucB415
CSPI07G05000	Watermelon (97103) v2	cpiwmbB577