CSPI07G03980 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G03980
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationChr7 : 3104579 .. 3105025 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGAGGTTATGCTTCTGAAGGTACTAATGCTTATAAGGCCCTTGCTATGTATCGTAAAATGCTAGCATTTGGATTCAATGCTGACAATTATACATCCTCTTTTGTACTAAAGGCGTGTGGTAATCTGGGTCTTTGTGGAATGGGAATGGAAATTCATTGTCGGGTGGAGGTTTGTGGGTGGGACTCAGATATTTATGTGAACAATTCTCTTGTAGCAGTGTATTTGAAATTTGGGAATGTGGATGTTGCAAGGAAGCTGTTTGATAAAATGCCTGTGAGGGATTTAACTTCTTGGAATACTATGATTTCAGGTTACGTGAGGAATAATAACGCCAGGGAAGCTTTAACGATTTTTTATCTAATGGGAAAGTCTGGGTTGAAAGCAGATGGGACGACTTTGCTATTTTACTTTGAATGGCTTCTTGATGAACTCACTGATTGA

mRNA sequence

ATGATTAGAGGTTATGCTTCTGAAGGTACTAATGCTTATAAGGCCCTTGCTATGTATCGTAAAATGCTAGCATTTGGATTCAATGCTGACAATTATACATCCTCTTTTGTACTAAAGGCGTGTGGTAATCTGGGTCTTTGTGGAATGGGAATGGAAATTCATTGTCGGGTGGAGGTTTGTGGGTGGGACTCAGATATTTATGTGAACAATTCTCTTGTAGCAGTGTATTTGAAATTTGGGAATGTGGATGTTGCAAGGAAGCTGTTTGATAAAATGCCTGTGAGGGATTTAACTTCTTGGAATACTATGATTTCAGGTTACGTGAGGAATAATAACGCCAGGGAAGCTTTAACGATTTTTTATCTAATGGGAAAGTCTGGGTTGAAAGCAGATGGGACGACTTTGCTATTTTACTTTGAATGGCTTCTTGATGAACTCACTGATTGA

Coding sequence (CDS)

ATGATTAGAGGTTATGCTTCTGAAGGTACTAATGCTTATAAGGCCCTTGCTATGTATCGTAAAATGCTAGCATTTGGATTCAATGCTGACAATTATACATCCTCTTTTGTACTAAAGGCGTGTGGTAATCTGGGTCTTTGTGGAATGGGAATGGAAATTCATTGTCGGGTGGAGGTTTGTGGGTGGGACTCAGATATTTATGTGAACAATTCTCTTGTAGCAGTGTATTTGAAATTTGGGAATGTGGATGTTGCAAGGAAGCTGTTTGATAAAATGCCTGTGAGGGATTTAACTTCTTGGAATACTATGATTTCAGGTTACGTGAGGAATAATAACGCCAGGGAAGCTTTAACGATTTTTTATCTAATGGGAAAGTCTGGGTTGAAAGCAGATGGGACGACTTTGCTATTTTACTTTGAATGGCTTCTTGATGAACTCACTGATTGA
Homology
[Close]
BLAST of CSPI07G03980 vs. Swiss-Prot
Match: PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-22
Identity = 53/136 (38.97%), Postives = 80/136 (58.82%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVC 60
           MIRG  +   +   AL++YR+M   G   D +T +FV  AC  L   G+G  +H  +   
Sbjct: 102 MIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKV 161

Query: 61  GWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTIF 120
           G + D+++N+SL+ +Y K G V  ARKLFD++  RD  SWN+MISGY     A++A+ +F
Sbjct: 162 GLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLF 221

Query: 121 YLMGKSGLKADGTTLL 137
             M + G + D  TL+
Sbjct: 222 RKMEEEGFEPDERTLV 237

[Close]
BLAST of CSPI07G03980 vs. Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.0e-22
Identity = 46/121 (38.02%), Postives = 77/121 (63.64%), Query Frame = 1 

Query: 16  LAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVCGWDSDIYVNNSLVAV 75
           +A YR+ML+   +  NYT + V+K+C +L    +G  +HC   V G+  D YV  +LV  
Sbjct: 92  VAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTF 151

Query: 76  YLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTIFYLMGKSGLKADGTTL 135
           Y K G+++ AR++FD+MP + + +WN+++SG+ +N  A EA+ +FY M +SG + D  T 
Sbjct: 152 YSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATF 211

Query: 136 L 137
           +
Sbjct: 212 V 212

[Close]
BLAST of CSPI07G03980 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 102.1 bits (253), Expect = 5.5e-21
Identity = 55/137 (40.15%), Postives = 81/137 (59.12%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKMLAFGF-NADNYTSSFVLKACGNLGLCGMGMEIHCRVEV 60
           +IRGYA  G N+  A ++YR+M   G    D +T  F++KA   +    +G  IH  V  
Sbjct: 91  LIRGYAEIG-NSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIR 150

Query: 61  CGWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTI 120
            G+ S IYV NSL+ +Y   G+V  A K+FDKMP +DL +WN++I+G+  N    EAL +
Sbjct: 151 SGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALAL 210

Query: 121 FYLMGKSGLKADGTTLL 137
           +  M   G+K DG T++
Sbjct: 211 YTEMNSKGIKPDGFTIV 226

[Close]
BLAST of CSPI07G03980 vs. Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-20
Identity = 55/136 (40.44%), Postives = 77/136 (56.62%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKML-AFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEV 60
           ++ GYA +G    +A+ +Y +ML   G   D YT   VL+ CG +     G E+H  V  
Sbjct: 166 LVGGYAKQGYFD-EAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVR 225

Query: 61  CGWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTI 120
            G++ DI V N+L+ +Y+K G+V  AR LFD+MP RD+ SWN MISGY  N    E L +
Sbjct: 226 YGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLEL 285

Query: 121 FYLMGKSGLKADGTTL 136
           F+ M    +  D  TL
Sbjct: 286 FFAMRGLSVDPDLMTL 300

[Close]
BLAST of CSPI07G03980 vs. Swiss-Prot
Match: PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-20
Identity = 53/131 (40.46%), Postives = 79/131 (60.31%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVC 60
           +I GYA  G     A+A+Y +M   G   D +T   VLKACG +G   +G  IH  +   
Sbjct: 166 LISGYAELGQYE-DAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKE 225

Query: 61  GWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTIF 120
           G+  D+YV N+LV +Y K G++  AR +FD +P +D  SWN+M++GY+ +    EAL IF
Sbjct: 226 GFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEALDIF 285

Query: 121 YLMGKSGLKAD 132
            LM ++G++ D
Sbjct: 286 RLMVQNGIEPD 295

[Close]
BLAST of CSPI07G03980 vs. TrEMBL
Match: A0A0A0K3M3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044890 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.0e-53
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 2   IRGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVCG 61
           +RGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVCG
Sbjct: 43  LRGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVCG 102

Query: 62  WDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMIS 106
           WDSDIYVNNSLVAVYLKFGNVDVARK+FDKMPVRDLTSWNTMIS
Sbjct: 103 WDSDIYVNNSLVAVYLKFGNVDVARKVFDKMPVRDLTSWNTMIS 146

[Close]
BLAST of CSPI07G03980 vs. TrEMBL
Match: M5WUT9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020947mg PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-37
Identity = 84/136 (61.76%), Postives = 103/136 (75.74%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVC 60
           MIRGYA    +  KAL +YR+ML+FG  ADN+T  FVLKACG+L L   G  +H  V V 
Sbjct: 106 MIRGYACNECSL-KALVLYREMLSFGQKADNFTYPFVLKACGDLLLVETGRRVHSEVVVS 165

Query: 61  GWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTIF 120
           G +SDIYV N+L+A+Y KFG++ +AR LFD+M  RDL SWNTMISGYV+NNN R+AL +F
Sbjct: 166 GLESDIYVANALLAMYSKFGHMGLARMLFDRMLERDLISWNTMISGYVKNNNPRKALEVF 225

Query: 121 YLMGKSGLKADGTTLL 137
             MGK+GLKADGTTLL
Sbjct: 226 EEMGKAGLKADGTTLL 240

[Close]
BLAST of CSPI07G03980 vs. TrEMBL
Match: B9RPP2_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1547920 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.8e-34
Identity = 75/136 (55.15%), Postives = 95/136 (69.85%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVC 60
           MIRGYA  G    KAL +Y+ M +FG  AD +T  FV+KACG+L     G  +HC V + 
Sbjct: 114 MIRGYACNGFPV-KALFLYQDMSSFGQKADKFTYPFVIKACGDLRDVEFGWRVHCEVVIT 173

Query: 61  GWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTIF 120
           G++ DIYV NSL+A+Y KFGN+ +AR +FD+MPVRDLTSWNTMISGY++N   RE L IF
Sbjct: 174 GFNLDIYVGNSLLAMYSKFGNMKMARMVFDRMPVRDLTSWNTMISGYLKNGKPREVLAIF 233

Query: 121 YLMGKSGLKADGTTLL 137
            LM + GL  D  TL+
Sbjct: 234 NLMKQIGLSVDDMTLI 248

[Close]
BLAST of CSPI07G03980 vs. TrEMBL
Match: A0A164W8N7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021197 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.4e-33
Identity = 72/136 (52.94%), Postives = 100/136 (73.53%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVC 60
           MIRGYA  G ++ KAL++YR M+ FG   DN+T  FVLKACG+LG+  +G ++HC + V 
Sbjct: 22  MIRGYACNG-DSLKALSLYRDMMIFGQKFDNFTYPFVLKACGDLGVVEIGRKVHCELVVN 81

Query: 61  GWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTIF 120
           G++ D+YV NSL+A+Y KFG++D  R +FD+M  RDLTSWN++ISG V+N  +REAL  F
Sbjct: 82  GFEEDVYVANSLLAMYGKFGDIDKVRIVFDRMTKRDLTSWNSLISGLVKNGASREALVTF 141

Query: 121 YLMGKSGLKADGTTLL 137
           + M   G+ AD TT+L
Sbjct: 142 WRMRSCGVVADCTTIL 156

[Close]
BLAST of CSPI07G03980 vs. TrEMBL
Match: A0A0B2S7J6_GLYSO (Pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_017234 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.8e-33
Identity = 74/136 (54.41%), Postives = 96/136 (70.59%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVC 60
           MIRGYA   + + KAL +YR+ML FG   DN+T  FVLKACG+L L  +G ++H  V V 
Sbjct: 96  MIRGYACNNSPS-KALVLYREMLHFGHKPDNFTYPFVLKACGDLLLREIGGKVHALVVVG 155

Query: 61  GWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTIF 120
           G + D+YV NS++++Y KFG+V  AR +FDKMPVRDLTSWNTM+SG+V+N  AR A  +F
Sbjct: 156 GLEEDVYVGNSILSMYFKFGDVAAARVMFDKMPVRDLTSWNTMMSGFVKNGEARGAFEVF 215

Query: 121 YLMGKSGLKADGTTLL 137
             M + G   DG TLL
Sbjct: 216 GDMRRDGFVGDGITLL 230

[Close]
BLAST of CSPI07G03980 vs. TAIR10
Match: AT2G34400.1 (AT2G34400.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 107.8 bits (268), Expect = 5.7e-24
Identity = 53/136 (38.97%), Postives = 80/136 (58.82%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVC 60
           MIRG  +   +   AL++YR+M   G   D +T +FV  AC  L   G+G  +H  +   
Sbjct: 102 MIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKV 161

Query: 61  GWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTIF 120
           G + D+++N+SL+ +Y K G V  ARKLFD++  RD  SWN+MISGY     A++A+ +F
Sbjct: 162 GLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLF 221

Query: 121 YLMGKSGLKADGTTLL 137
             M + G + D  TL+
Sbjct: 222 RKMEEEGFEPDERTLV 237

[Close]
BLAST of CSPI07G03980 vs. TAIR10
Match: AT2G33760.1 (AT2G33760.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-23
Identity = 46/121 (38.02%), Postives = 77/121 (63.64%), Query Frame = 1 

Query: 16  LAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVCGWDSDIYVNNSLVAV 75
           +A YR+ML+   +  NYT + V+K+C +L    +G  +HC   V G+  D YV  +LV  
Sbjct: 92  VAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTF 151

Query: 76  YLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTIFYLMGKSGLKADGTTL 135
           Y K G+++ AR++FD+MP + + +WN+++SG+ +N  A EA+ +FY M +SG + D  T 
Sbjct: 152 YSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATF 211

Query: 136 L 137
           +
Sbjct: 212 V 212

[Close]
BLAST of CSPI07G03980 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 102.1 bits (253), Expect = 3.1e-22
Identity = 55/137 (40.15%), Postives = 81/137 (59.12%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKMLAFGF-NADNYTSSFVLKACGNLGLCGMGMEIHCRVEV 60
           +IRGYA  G N+  A ++YR+M   G    D +T  F++KA   +    +G  IH  V  
Sbjct: 91  LIRGYAEIG-NSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIR 150

Query: 61  CGWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTI 120
            G+ S IYV NSL+ +Y   G+V  A K+FDKMP +DL +WN++I+G+  N    EAL +
Sbjct: 151 SGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALAL 210

Query: 121 FYLMGKSGLKADGTTLL 137
           +  M   G+K DG T++
Sbjct: 211 YTEMNSKGIKPDGFTIV 226

[Close]
BLAST of CSPI07G03980 vs. TAIR10
Match: AT1G59720.1 (AT1G59720.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-21
Identity = 55/136 (40.44%), Postives = 81/136 (59.56%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKMLAFGFNA-DNYTSSFVLKACGNLGLCGMGMEIHCRVEV 60
           +IR  A + +   +A  +YRKML  G ++ D +T  FVLKAC  +     G ++HC++  
Sbjct: 120 LIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVK 179

Query: 61  CGWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTI 120
            G+  D+YVNN L+ +Y   G +D+ARK+FD+MP R L SWN+MI   VR      AL +
Sbjct: 180 HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQL 239

Query: 121 FYLMGKSGLKADGTTL 136
           F  M +S  + DG T+
Sbjct: 240 FREMQRS-FEPDGYTM 254

[Close]
BLAST of CSPI07G03980 vs. TAIR10
Match: AT1G15510.1 (AT1G15510.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-21
Identity = 55/136 (40.44%), Postives = 77/136 (56.62%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKML-AFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEV 60
           ++ GYA +G    +A+ +Y +ML   G   D YT   VL+ CG +     G E+H  V  
Sbjct: 166 LVGGYAKQGYFD-EAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVR 225

Query: 61  CGWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTI 120
            G++ DI V N+L+ +Y+K G+V  AR LFD+MP RD+ SWN MISGY  N    E L +
Sbjct: 226 YGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLEL 285

Query: 121 FYLMGKSGLKADGTTL 136
           F+ M    +  D  TL
Sbjct: 286 FFAMRGLSVDPDLMTL 300

[Close]
BLAST of CSPI07G03980 vs. NCBI nr
Match: gi|700188316|gb|KGN43549.1| (hypothetical protein Csa_7G044890 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.4e-53
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 2   IRGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVCG 61
           +RGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVCG
Sbjct: 43  LRGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVCG 102

Query: 62  WDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMIS 106
           WDSDIYVNNSLVAVYLKFGNVDVARK+FDKMPVRDLTSWNTMIS
Sbjct: 103 WDSDIYVNNSLVAVYLKFGNVDVARKVFDKMPVRDLTSWNTMIS 146

[Close]
BLAST of CSPI07G03980 vs. NCBI nr
Match: gi|659110768|ref|XP_008455401.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucumis melo])

HSP 1 Score: 206.1 bits (523), Expect = 4.4e-50
Identity = 106/136 (77.94%), Postives = 112/136 (82.35%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVC 60
           MIRGYAS+GTNAYKALAMYRK+LAFGFNADNY   FVLKACG+LGLC M MEIHC+VEVC
Sbjct: 1   MIRGYASDGTNAYKALAMYRKILAFGFNADNYIFPFVLKACGDLGLCEMEMEIHCQVEVC 60

Query: 61  GWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTIF 120
            WDSD  VNNSL           VA+K+FDKMPV DLTSWNTMISGYVRNNNA EALTI 
Sbjct: 61  VWDSD-NVNNSL-----------VAKKMFDKMPVSDLTSWNTMISGYVRNNNAMEALTIM 120

Query: 121 YLMGKSGLKADGTTLL 137
           YL GKS LKADGTTLL
Sbjct: 121 YLTGKSELKADGTTLL 124

[Close]
BLAST of CSPI07G03980 vs. NCBI nr
Match: gi|595950793|ref|XP_007216378.1| (hypothetical protein PRUPE_ppa020947mg [Prunus persica])

HSP 1 Score: 164.5 bits (415), Expect = 1.5e-37
Identity = 84/136 (61.76%), Postives = 103/136 (75.74%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVC 60
           MIRGYA    +  KAL +YR+ML+FG  ADN+T  FVLKACG+L L   G  +H  V V 
Sbjct: 106 MIRGYACNECSL-KALVLYREMLSFGQKADNFTYPFVLKACGDLLLVETGRRVHSEVVVS 165

Query: 61  GWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTIF 120
           G +SDIYV N+L+A+Y KFG++ +AR LFD+M  RDL SWNTMISGYV+NNN R+AL +F
Sbjct: 166 GLESDIYVANALLAMYSKFGHMGLARMLFDRMLERDLISWNTMISGYVKNNNPRKALEVF 225

Query: 121 YLMGKSGLKADGTTLL 137
             MGK+GLKADGTTLL
Sbjct: 226 EEMGKAGLKADGTTLL 240

[Close]
BLAST of CSPI07G03980 vs. NCBI nr
Match: gi|645248129|ref|XP_008230158.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Prunus mume])

HSP 1 Score: 161.0 bits (406), Expect = 1.6e-36
Identity = 83/136 (61.03%), Postives = 102/136 (75.00%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVC 60
           MIRGYA    +  KAL +YR+ML+FG  ADN+T  FVLKACG+L L   G  +H  V V 
Sbjct: 106 MIRGYACNECSL-KALVLYREMLSFGQKADNFTYPFVLKACGDLLLVETGRRVHSEVVVS 165

Query: 61  GWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTIF 120
           G +SDIYV N+L+A+Y KFG++ +AR LFD+M  RDL SWNTMIS YV+NNN R+AL +F
Sbjct: 166 GLESDIYVANALLAMYSKFGDMGLARMLFDRMLERDLISWNTMISCYVKNNNLRKALEVF 225

Query: 121 YLMGKSGLKADGTTLL 137
             MGK+GLKADGTTLL
Sbjct: 226 EEMGKAGLKADGTTLL 240

[Close]
BLAST of CSPI07G03980 vs. NCBI nr
Match: gi|720096541|ref|XP_010247013.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Nelumbo nucifera])

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-36
Identity = 76/136 (55.88%), Postives = 106/136 (77.94%), Query Frame = 1 

Query: 1   MIRGYASEGTNAYKALAMYRKMLAFGFNADNYTSSFVLKACGNLGLCGMGMEIHCRVEVC 60
           MIRGYA  G +   ++ +YR+M++FG  ADN+T  FVLKACG+L L  +G +IH  + + 
Sbjct: 116 MIRGYACNGFSL-NSIVLYREMMSFGQKADNFTYPFVLKACGDLLLVEVGRKIHSELVIR 175

Query: 61  GWDSDIYVNNSLVAVYLKFGNVDVARKLFDKMPVRDLTSWNTMISGYVRNNNAREALTIF 120
           G +SD+YV NSL+A+YLKFG+++ AR+LFD M +RDLTSWNTMISGY++N+ + EAL++F
Sbjct: 176 GLESDVYVGNSLLAMYLKFGDMETARRLFDGMSLRDLTSWNTMISGYIKNHESGEALSVF 235

Query: 121 YLMGKSGLKADGTTLL 137
           YLM + G +AD TTLL
Sbjct: 236 YLMSRVGQRADCTTLL 250

The following BLAST results are available for this feature:
BLAST of CSPI07G03980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP184_ARATH1.0e-2238.97Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN... [more]
PP182_ARATH5.0e-2238.02Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN... [more]
PP330_ARATH5.5e-2140.15Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN... [more]
PPR45_ARATH2.1e-2040.44Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidop... [more]
PP337_ARATH2.1e-2040.46Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidop... [more]
BLAST of CSPI07G03980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3M3_CUCSA1.0e-5398.08Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044890 PE=4 SV=1[more]
M5WUT9_PRUPE1.0e-3761.76Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020947mg PE=4 SV=1[more]
B9RPP2_RICCO6.8e-3455.15Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
A0A164W8N7_DAUCA4.4e-3352.94Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021197 PE=4 SV=1[more]
A0A0B2S7J6_GLYSO9.8e-3354.41Pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_017234 PE... [more]
BLAST of CSPI07G03980 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G34400.15.7e-2438.97 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT2G33760.12.8e-2338.02 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G21065.13.1e-2240.15 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G59720.11.2e-2140.44 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G15510.11.2e-2140.44 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of CSPI07G03980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188316|gb|KGN43549.1|1.4e-5398.08hypothetical protein Csa_7G044890 [Cucumis sativus][more]
gi|659110768|ref|XP_008455401.1|4.4e-5077.94PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic-... [more]
gi|595950793|ref|XP_007216378.1|1.5e-3761.76hypothetical protein PRUPE_ppa020947mg [Prunus persica][more]
gi|645248129|ref|XP_008230158.1|1.6e-3661.03PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Prunus mu... [more]
gi|720096541|ref|XP_010247013.1|2.1e-3655.88PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Nelumbo n... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G03980.1CSPI07G03980.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 70..95
score: 0.0011coord: 99..128
score: 2.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 70..96
score: 0.0013coord: 99..131
score: 2.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 30..64
score: 5.557coord: 96..130
score: 11.323coord: 1..29
score: 7.64coord: 65..95
score: 8
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..135
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G03980Csa7G044890Cucumber (Chinese Long) v2cpicuB354
CSPI07G03980MELO3C028648.2Melon (DHL92) v3.6.1cpimedB523
CSPI07G03980CsaV3_7G003850Cucumber (Chinese Long) v3cpicucB415
CSPI07G03980Bhi05G001148Wax gourdcpiwgoB681
CSPI07G03980Cucsa.148260Cucumber (Gy14) v1cgycpiB220
CSPI07G03980CmoCh19G009660Cucurbita moschata (Rifu)cmocpiB524
CSPI07G03980CsGy7G003640Cucumber (Gy14) v2cgybcpiB332
CSPI07G03980Carg19186Silver-seed gourdcarcpiB0911
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G03980Cucumber (Chinese Long) v3cpicucB380
CSPI07G03980Cucumber (Chinese Long) v3cpicucB385
CSPI07G03980Cucumber (Chinese Long) v3cpicucB409
CSPI07G03980Watermelon (97103) v2cpiwmbB562
CSPI07G03980Watermelon (97103) v2cpiwmbB553
CSPI07G03980Watermelon (97103) v2cpiwmbB539
CSPI07G03980Watermelon (97103) v2cpiwmbB556
CSPI07G03980Wax gourdcpiwgoB691
CSPI07G03980Wax gourdcpiwgoB699
CSPI07G03980Wild cucumber (PI 183967)cpicpiB050
CSPI07G03980Wild cucumber (PI 183967)cpicpiB090
CSPI07G03980Wild cucumber (PI 183967)cpicpiB188
CSPI07G03980Cucumber (Gy14) v1cgycpiB029
CSPI07G03980Cucumber (Gy14) v1cgycpiB069
CSPI07G03980Cucurbita maxima (Rimu)cmacpiB144
CSPI07G03980Cucurbita maxima (Rimu)cmacpiB233
CSPI07G03980Cucurbita maxima (Rimu)cmacpiB533
CSPI07G03980Cucurbita maxima (Rimu)cmacpiB576
CSPI07G03980Cucurbita maxima (Rimu)cmacpiB650
CSPI07G03980Cucurbita moschata (Rifu)cmocpiB131
CSPI07G03980Cucurbita moschata (Rifu)cmocpiB220
CSPI07G03980Cucurbita moschata (Rifu)cmocpiB568
CSPI07G03980Cucurbita moschata (Rifu)cmocpiB643
CSPI07G03980Cucumber (Chinese Long) v2cpicuB326
CSPI07G03980Melon (DHL92) v3.5.1cpimeB538
CSPI07G03980Melon (DHL92) v3.5.1cpimeB520
CSPI07G03980Melon (DHL92) v3.5.1cpimeB575
CSPI07G03980Watermelon (Charleston Gray)cpiwcgB566
CSPI07G03980Watermelon (Charleston Gray)cpiwcgB574
CSPI07G03980Watermelon (Charleston Gray)cpiwcgB578
CSPI07G03980Watermelon (Charleston Gray)cpiwcgB583
CSPI07G03980Watermelon (97103) v1cpiwmB600
CSPI07G03980Watermelon (97103) v1cpiwmB612
CSPI07G03980Watermelon (97103) v1cpiwmB614
CSPI07G03980Watermelon (97103) v1cpiwmB617
CSPI07G03980Cucurbita pepo (Zucchini)cpecpiB257
CSPI07G03980Cucurbita pepo (Zucchini)cpecpiB301
CSPI07G03980Cucurbita pepo (Zucchini)cpecpiB692
CSPI07G03980Cucurbita pepo (Zucchini)cpecpiB768
CSPI07G03980Bottle gourd (USVL1VR-Ls)cpilsiB499
CSPI07G03980Bottle gourd (USVL1VR-Ls)cpilsiB505
CSPI07G03980Bottle gourd (USVL1VR-Ls)cpilsiB516
CSPI07G03980Bottle gourd (USVL1VR-Ls)cpilsiB522
CSPI07G03980Melon (DHL92) v3.6.1cpimedB507
CSPI07G03980Melon (DHL92) v3.6.1cpimedB509
CSPI07G03980Melon (DHL92) v3.6.1cpimedB560
CSPI07G03980Cucumber (Gy14) v2cgybcpiB087
CSPI07G03980Cucumber (Gy14) v2cgybcpiB295
CSPI07G03980Silver-seed gourdcarcpiB0034
CSPI07G03980Silver-seed gourdcarcpiB0378
CSPI07G03980Silver-seed gourdcarcpiB0673
CSPI07G03980Silver-seed gourdcarcpiB0755