CSPI07G02010 (gene) Wild cucumber (PI 183967)

NameCSPI07G02010
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr7 : 1694422 .. 1695622 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAATTCTCTACCCGATGTTAACTCCACACAACTACACGGTGTGGACGATAAAGGCAGAAGCAATCCTCGATGCCCAAGGAGTTTGGGAAGCAATAGAGCCAGCGAGAGGAGCCGAAGTGGATGTGAAGAAGGACAAAAAGGTGTGTGTACATTCTCCAATGCATCCTGAAAGACGTGCTTCTACTGCTAAGAAGAAGATCGCAAAGGAAATATGGGATAGTCTCAAGACAAGTTACTTGGGCAGTGAGCGGGTGAAGATGGCGAGAGTTCAAACCTTGAAGCGTGAGTTTAATGTACTTCGGATGAAGGAAACCGAGATGATCGATGAGTTTGCAGGAAAAATCAGCGGATTAGCAAGCAAGTTCACCACCCTCGGAGTTGCACTTAAGGATTCATCATTGGTCAAGAAGCTCCTCGATTCCGTACCCGACAAATATCTTCCCATTGTCGCCGGAATTGAGCAATTTCAAGATCTCGAAACCATGCCATTTGAAGAAGCAATTGGACGGATGAAGGCATACGAGGAANNNNNNNNNNNNNNNNNNNNNNNNNCAACACCGATGGACAACTCCTACTTACCCATGCCGAATGGAAAGCTAGACAAAAAGGACATAGTGGTGACAACTCCTCAATGACCAAAGGGCGCGAATTTGGTGGTACCGATCGAGGAAGATGGCGAGGACGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGCACTCGTGATAAAAGTCACATTAAGTGTTTCACTTGCAACAAGATGGGACATTACGCGTCGGAATGTCGTGGAAAAGGTCGTGACGAGGAAGCTCATCTAACTTGTGCCGTCGAAGAAGAACCAACTTTGATGGTGGCCATGTCCCAGGAGGGGACACGCACTATATGTGATCAGGAGGATGCCATACTACTCAGCAAAGAGCGGTTGTTGCCAGAGATGTATTGCAACGACAAGAATGGAGAAAATAATGATGTTTGGTATCTAGCACGGTGCTAGTAACGCTGGCCATCGTAAGAAGTTCCAAGAATTAGATGAAAGCTTCACTGGGAGGGGGAAGTTTGGCGATCAACCATTCAGATCATGGGAAAAGGAACAGTCATGTTCGAGTGCAAGAACGGTGATCAGAAGGCTCTCCAAGAGGTGTATCACATTCCAAAATTATGTAGTAACATCATAA

mRNA sequence

ATGCCAATTCTCTACCCGATGTTAACTCCACACAACTACACGGTGTGGACGATAAAGGCAGAAGCAATCCTCGATGCCCAAGGAGTTTGGGAAGCAATAGAGCCAGCGAGAGGAGCCGAAGTGGATGTGAAGAAGGACAAAAAGGTGTGTGTACATTCTCCAATGCATCCTGAAAGACGTGCTTCTACTGCTAAGAAGAAGATCGCAAAGGAAATATGGGATAGTCTCAAGACAAGTTACTTGGGCAGTGAGCGGGTGAAGATGGCGAGAGTTCAAACCTTGAAGCGTGAGTTTAATGTACTTCGGATGAAGGAAACCGAGATGATCGATGAGTTTGCAGGAAAAATCAGCGGATTAGCAAGCAAGTTCACCACCCTCGGAGTTGCACTTAAGGATTCATCATTGGTCAAGAAGCTCCTCGATTCCGGCGCGAATTTGGTGGTACCGATCGAGGAAGATGGCGAGGACATGGGACATTACGCGTCGGAATGTCGTGGAAAAGGTCGTGACGAGGAAGCTCATCTAACTTGTGCCGTCGAAGAAGAACCAACTTTGATGGTGGCCATGTCCCAGGAGGGGACACGCACTATATGTGATCAGGAGGATGCCATACTACTCAGCAAAGAGCGGTTGTTGCCAGAGATTAACGCTGGCCATCGTAAGAAGTTCCAAGAATTAGATGAAAGCTTCACTGGGAGGGGGAAGTTTGGCGATCAACCATTCAGATCATGGGAAAAGGAACAGTCATGTTCGAGTGCAAGAACGGTGATCAGAAGGCTCTCCAAGAGGTGTATCACATTCCAAAATTATGTAGTAACATCATAA

Coding sequence (CDS)

ATGCCAATTCTCTACCCGATGTTAACTCCACACAACTACACGGTGTGGACGATAAAGGCAGAAGCAATCCTCGATGCCCAAGGAGTTTGGGAAGCAATAGAGCCAGCGAGAGGAGCCGAAGTGGATGTGAAGAAGGACAAAAAGGTGTGTGTACATTCTCCAATGCATCCTGAAAGACGTGCTTCTACTGCTAAGAAGAAGATCGCAAAGGAAATATGGGATAGTCTCAAGACAAGTTACTTGGGCAGTGAGCGGGTGAAGATGGCGAGAGTTCAAACCTTGAAGCGTGAGTTTAATGTACTTCGGATGAAGGAAACCGAGATGATCGATGAGTTTGCAGGAAAAATCAGCGGATTAGCAAGCAAGTTCACCACCCTCGGAGTTGCACTTAAGGATTCATCATTGGTCAAGAAGCTCCTCGATTCCGGCGCGAATTTGGTGGTACCGATCGAGGAAGATGGCGAGGACATGGGACATTACGCGTCGGAATGTCGTGGAAAAGGTCGTGACGAGGAAGCTCATCTAACTTGTGCCGTCGAAGAAGAACCAACTTTGATGGTGGCCATGTCCCAGGAGGGGACACGCACTATATGTGATCAGGAGGATGCCATACTACTCAGCAAAGAGCGGTTGTTGCCAGAGATTAACGCTGGCCATCGTAAGAAGTTCCAAGAATTAGATGAAAGCTTCACTGGGAGGGGGAAGTTTGGCGATCAACCATTCAGATCATGGGAAAAGGAACAGTCATGTTCGAGTGCAAGAACGGTGATCAGAAGGCTCTCCAAGAGGTGTATCACATTCCAAAATTATGTAGTAACATCATAA
BLAST of CSPI07G02010 vs. TrEMBL
Match: Q2QUP7_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os12g15530 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.0e-36
Identity = 82/140 (58.57%), Postives = 101/140 (72.14%), Query Frame = 1

Query: 5   YPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDK--KVCVHSPMHPERRAS 64
           YP+LT  NY+ W IK EA ++AQG+W+AIEPA    VD+KKDK  + C+   +  +    
Sbjct: 443 YPVLTSTNYSTWAIKMEANMEAQGIWDAIEPAADEAVDIKKDKQARACLFGAVPEDVLQQ 502

Query: 65  TAKKKIAKEIWDSLKTSYLGSERVKMARVQTLKREFNVLRMKETEMIDEFAGKISGLASK 124
            AKKK AKE+W+SLKT +LG ERVK ARVQTLK +F  L MK+TE IDEFAGKISGLA+K
Sbjct: 503 IAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFKALHMKDTESIDEFAGKISGLANK 562

Query: 125 FTTLGVALKDSSLVKKLLDS 143
            + LGV + D   VKKLLDS
Sbjct: 563 LSDLGVTMDDDEQVKKLLDS 582

BLAST of CSPI07G02010 vs. TrEMBL
Match: Q0JH75_ORYSJ (Os01g0879800 protein OS=Oryza sativa subsp. japonica GN=Os01g0879800 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.0e-36
Identity = 82/140 (58.57%), Postives = 101/140 (72.14%), Query Frame = 1

Query: 5   YPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDK--KVCVHSPMHPERRAS 64
           YP+LT  NY+ W IK EA ++AQG+W+AIEPA    VD+KKDK  + C+   +  +    
Sbjct: 30  YPVLTSTNYSTWAIKMEANMEAQGIWDAIEPAADEAVDIKKDKQARACLFGAVPEDVLQQ 89

Query: 65  TAKKKIAKEIWDSLKTSYLGSERVKMARVQTLKREFNVLRMKETEMIDEFAGKISGLASK 124
            AKKK AKE+W+SLKT +LG ERVK ARVQTLK +F  L MK+TE IDEFAGKISGLA+K
Sbjct: 90  IAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFKALHMKDTESIDEFAGKISGLANK 149

Query: 125 FTTLGVALKDSSLVKKLLDS 143
            + LGV + D   VKKLLDS
Sbjct: 150 LSDLGVTMDDDEQVKKLLDS 169

BLAST of CSPI07G02010 vs. TrEMBL
Match: Q0IZT5_ORYSJ (Os09g0551200 protein OS=Oryza sativa subsp. japonica GN=Os09g0551200 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.0e-32
Identity = 80/140 (57.14%), Postives = 95/140 (67.86%), Query Frame = 1

Query: 5   YPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDKKV--CVHSPMHPERRAS 64
           YPMLT  NY+ W IK EA ++AQG+W+AIE A    V+ KKDK    C+   +  E    
Sbjct: 30  YPMLTSTNYSTWAIKMEANMEAQGIWDAIESAADDVVEKKKDKMALACLFGAVPDEVLQQ 89

Query: 65  TAKKKIAKEIWDSLKTSYLGSERVKMARVQTLKREFNVLRMKETEMIDEFAGKISGLASK 124
            A KK AKE W+SLKT +LG +RVK ARVQTLK EF  L MK+TE IDEFAGKISGLA+ 
Sbjct: 90  IANKKTAKEAWESLKTRFLGVDRVKKARVQTLKSEFKALCMKKTETIDEFAGKISGLANA 149

Query: 125 FTTLGVALKDSSLVKKLLDS 143
            + LG  + D  LVKKLLDS
Sbjct: 150 MSGLGATMTDDELVKKLLDS 169

BLAST of CSPI07G02010 vs. TrEMBL
Match: Q2QVG3_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g12910 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.0e-32
Identity = 80/140 (57.14%), Postives = 95/140 (67.86%), Query Frame = 1

Query: 5   YPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDKKV--CVHSPMHPERRAS 64
           YPMLT  NY+ W IK EA ++AQG+W+AIE A    V+ KKDK    C+   +  E    
Sbjct: 21  YPMLTSTNYSTWAIKMEANMEAQGIWDAIESAADDVVEKKKDKMALACLFGAVPDEVLQQ 80

Query: 65  TAKKKIAKEIWDSLKTSYLGSERVKMARVQTLKREFNVLRMKETEMIDEFAGKISGLASK 124
            A KK AKE W+SLKT +LG +RVK ARVQTLK EF  L MK+TE IDEFAGKISGLA+ 
Sbjct: 81  IANKKTAKEAWESLKTRFLGVDRVKKARVQTLKSEFKALCMKKTETIDEFAGKISGLANA 140

Query: 125 FTTLGVALKDSSLVKKLLDS 143
            + LG  + D  LVKKLLDS
Sbjct: 141 MSGLGATMTDDELVKKLLDS 160

BLAST of CSPI07G02010 vs. TrEMBL
Match: B6TVF1_MAIZE (Retrotransposon protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.2e-29
Identity = 70/151 (46.36%), Postives = 102/151 (67.55%), Query Frame = 1

Query: 1   MPILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDK--KVCVHSPMHPE 60
           M + YP+L P +YT W IK EA LDAQG+WEA+ PA G  VDV+K K  +  +   +  +
Sbjct: 13  MSMAYPVLVPASYTAWAIKVEANLDAQGLWEAVAPAAGTTVDVQKSKTARAVLLQALPED 72

Query: 61  RRASTAKKKIAKEIWDSLKTSYLGSERVKMARVQTLKREFNVLRMKETEMIDEFAGKISG 120
                + K  AKE+WDSLK+ Y+G++RVK AR+ TLK EF+ L M++ E +D +AGKI G
Sbjct: 73  ILLQVSSKLTAKEVWDSLKSRYVGADRVKSARLATLKGEFDRLFMEDGEALDVYAGKIGG 132

Query: 121 LASKFTTLGVALKDSSLVKKLLDSGANLVVP 150
           +A+++  LG  L D+++VKKLLD+  + + P
Sbjct: 133 MAARYIALGATLDDATMVKKLLDTVPDRLYP 163

BLAST of CSPI07G02010 vs. NCBI nr
Match: gi|778722274|ref|XP_011658449.1| (PREDICTED: uncharacterized protein LOC105436008 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 2.8e-50
Identity = 112/144 (77.78%), Postives = 118/144 (81.94%), Query Frame = 1

Query: 1   MPILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDKKVCVH--SPMHPE 60
           MPI YPML PHNYT+WTIK EAILD Q VWEAIEP RG EVDVKKDKK CV+    +  +
Sbjct: 14  MPIFYPMLCPHNYTMWTIKTEAILDTQEVWEAIEPIRGLEVDVKKDKKACVYILQCILED 73

Query: 61  RRASTAKKKIAKEIWDSLKTSYLGSERVKMARVQTLKREFNVLRMKETEMIDEFAGKISG 120
                AKKK AKEIWD+LKT YLGSERVKMARV  LK EFNVLRMKETE IDEFAGKIS 
Sbjct: 74  VLLQIAKKKSAKEIWDNLKTRYLGSERVKMARVGILKSEFNVLRMKETETIDEFAGKISK 133

Query: 121 LASKFTTLGVALKDSSLVKKLLDS 143
           LASKFTTLGVAL+DSSLVKKLLDS
Sbjct: 134 LASKFTTLGVALEDSSLVKKLLDS 157

BLAST of CSPI07G02010 vs. NCBI nr
Match: gi|77554492|gb|ABA97288.1| (retrotransposon protein, putative, Ty1-copia subclass, expressed [Oryza sativa Japonica Group])

HSP 1 Score: 159.5 bits (402), Expect = 8.6e-36
Identity = 82/140 (58.57%), Postives = 101/140 (72.14%), Query Frame = 1

Query: 5   YPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDK--KVCVHSPMHPERRAS 64
           YP+LT  NY+ W IK EA ++AQG+W+AIEPA    VD+KKDK  + C+   +  +    
Sbjct: 443 YPVLTSTNYSTWAIKMEANMEAQGIWDAIEPAADEAVDIKKDKQARACLFGAVPEDVLQQ 502

Query: 65  TAKKKIAKEIWDSLKTSYLGSERVKMARVQTLKREFNVLRMKETEMIDEFAGKISGLASK 124
            AKKK AKE+W+SLKT +LG ERVK ARVQTLK +F  L MK+TE IDEFAGKISGLA+K
Sbjct: 503 IAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFKALHMKDTESIDEFAGKISGLANK 562

Query: 125 FTTLGVALKDSSLVKKLLDS 143
            + LGV + D   VKKLLDS
Sbjct: 563 LSDLGVTMDDDEQVKKLLDS 582

BLAST of CSPI07G02010 vs. NCBI nr
Match: gi|113534520|dbj|BAF06903.1| (Os01g0879800 [Oryza sativa Japonica Group])

HSP 1 Score: 159.5 bits (402), Expect = 8.6e-36
Identity = 82/140 (58.57%), Postives = 101/140 (72.14%), Query Frame = 1

Query: 5   YPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDK--KVCVHSPMHPERRAS 64
           YP+LT  NY+ W IK EA ++AQG+W+AIEPA    VD+KKDK  + C+   +  +    
Sbjct: 30  YPVLTSTNYSTWAIKMEANMEAQGIWDAIEPAADEAVDIKKDKQARACLFGAVPEDVLQQ 89

Query: 65  TAKKKIAKEIWDSLKTSYLGSERVKMARVQTLKREFNVLRMKETEMIDEFAGKISGLASK 124
            AKKK AKE+W+SLKT +LG ERVK ARVQTLK +F  L MK+TE IDEFAGKISGLA+K
Sbjct: 90  IAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFKALHMKDTESIDEFAGKISGLANK 149

Query: 125 FTTLGVALKDSSLVKKLLDS 143
            + LGV + D   VKKLLDS
Sbjct: 150 LSDLGVTMDDDEQVKKLLDS 169

BLAST of CSPI07G02010 vs. NCBI nr
Match: gi|77553519|gb|ABA96315.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 146.7 bits (369), Expect = 5.8e-32
Identity = 80/140 (57.14%), Postives = 95/140 (67.86%), Query Frame = 1

Query: 5   YPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDKKV--CVHSPMHPERRAS 64
           YPMLT  NY+ W IK EA ++AQG+W+AIE A    V+ KKDK    C+   +  E    
Sbjct: 21  YPMLTSTNYSTWAIKMEANMEAQGIWDAIESAADDVVEKKKDKMALACLFGAVPDEVLQQ 80

Query: 65  TAKKKIAKEIWDSLKTSYLGSERVKMARVQTLKREFNVLRMKETEMIDEFAGKISGLASK 124
            A KK AKE W+SLKT +LG +RVK ARVQTLK EF  L MK+TE IDEFAGKISGLA+ 
Sbjct: 81  IANKKTAKEAWESLKTRFLGVDRVKKARVQTLKSEFKALCMKKTETIDEFAGKISGLANA 140

Query: 125 FTTLGVALKDSSLVKKLLDS 143
            + LG  + D  LVKKLLDS
Sbjct: 141 MSGLGATMTDDELVKKLLDS 160

BLAST of CSPI07G02010 vs. NCBI nr
Match: gi|113632099|dbj|BAF25780.1| (Os09g0551200 [Oryza sativa Japonica Group])

HSP 1 Score: 146.7 bits (369), Expect = 5.8e-32
Identity = 80/140 (57.14%), Postives = 95/140 (67.86%), Query Frame = 1

Query: 5   YPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDKKV--CVHSPMHPERRAS 64
           YPMLT  NY+ W IK EA ++AQG+W+AIE A    V+ KKDK    C+   +  E    
Sbjct: 30  YPMLTSTNYSTWAIKMEANMEAQGIWDAIESAADDVVEKKKDKMALACLFGAVPDEVLQQ 89

Query: 65  TAKKKIAKEIWDSLKTSYLGSERVKMARVQTLKREFNVLRMKETEMIDEFAGKISGLASK 124
            A KK AKE W+SLKT +LG +RVK ARVQTLK EF  L MK+TE IDEFAGKISGLA+ 
Sbjct: 90  IANKKTAKEAWESLKTRFLGVDRVKKARVQTLKSEFKALCMKKTETIDEFAGKISGLANA 149

Query: 125 FTTLGVALKDSSLVKKLLDS 143
            + LG  + D  LVKKLLDS
Sbjct: 150 MSGLGATMTDDELVKKLLDS 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Q2QUP7_ORYSJ6.0e-3658.57Retrotransposon protein, putative, Ty1-copia subclass, expressed OS=Oryza sativa... [more]
Q0JH75_ORYSJ6.0e-3658.57Os01g0879800 protein OS=Oryza sativa subsp. japonica GN=Os01g0879800 PE=4 SV=1[more]
Q0IZT5_ORYSJ4.0e-3257.14Os09g0551200 protein OS=Oryza sativa subsp. japonica GN=Os09g0551200 PE=4 SV=1[more]
Q2QVG3_ORYSJ4.0e-3257.14Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap... [more]
B6TVF1_MAIZE3.2e-2946.36Retrotransposon protein OS=Zea mays PE=2 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778722274|ref|XP_011658449.1|2.8e-5077.78PREDICTED: uncharacterized protein LOC105436008 [Cucumis sativus][more]
gi|77554492|gb|ABA97288.1|8.6e-3658.57retrotransposon protein, putative, Ty1-copia subclass, expressed [Oryza sativa J... [more]
gi|113534520|dbj|BAF06903.1|8.6e-3658.57Os01g0879800 [Oryza sativa Japonica Group][more]
gi|77553519|gb|ABA96315.1|5.8e-3257.14retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro... [more]
gi|113632099|dbj|BAF25780.1|5.8e-3257.14Os09g0551200 [Oryza sativa Japonica Group][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0031410 cytoplasmic vesicle
molecular_function GO:0046872 metal ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G02010.1CSPI07G02010.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..142
score: 8.9
NoneNo IPR availablePANTHERPTHR11439:SF172SUBFAMILY NOT NAMEDcoord: 1..142
score: 8.9
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 51..142
score: 2.6

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None