CSPI07G01990 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G01990
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr7 : 1691571 .. 1692767 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATTGGAAGAGGAAGATATATGTTACTCATCCGGAGGGTTTTGAGGTTCCAAATGAAAAACACAAGGTGTATAGATTGTCAAATGCTCTTTACGGATTGAGGCAAGCTCCACAAGCTTGGAACATTCGACTTGATAGGAGTCTCAAAGATCTTGGTTTTAGAAAATGCACTCAAGAGCAAGCAATCTACACAAGAAGAGAAAAAGAGGAATATGTTCTTGTTGGAGTGTATGTTGACGATCTCATTGTAACAGGAAGTAGCATTGAAAAGGTCAATAAGTTCAAGCAATAAATGATGGCAAAATTTGAAATGAGTGACTTAGGCCTTCTCTCTTACTACTTAGGAATTGAAGTTGAACAACAGAAGGGTCGAATCATGCTCAAACAACCAACTTATGCCAAAAGAATTTTGTCCCAATTTGGAATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCATAAAGACACAGAAGAAGCACCAATTGATGCTACGAAGTATAGAAGCATCTTTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGGTATTTGAGAGGGACGATTCATTTTGGGCTCACTTATACGAAAGGTCCCAGAGAATTCAATATATTCGGTTACTCAGACAGTGATTTAGCTGGTGATCTCGACAGGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACGGTGGCACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCTACTACCGCAGCTTGCCAAGCATTGTGGTTAAGATGCCTTGTTAGCGAGATAGTCGGAATGGAGCCAAGGCCGGTAACATTATTTGTGGACAACAAATCCGCGATAGCTCTCATGAAGAATCCCGTATTTCATGGTCGCAACAAGCACATAGATACATGTTTTCATTTCATTCGAGAGTGTGTCAAGAATGGACAAATTATCGTTGAAGTTGTCAACACTGGAGAACAACGAGCCGATGTCCTGACTAAAGCATTGACGGGAGTAAAGTTAGCTGCTATGCGTCAACTACTTGGTGTTCGTAAGTTAGAATCATGCCAGAATTAG

mRNA sequence

ATGGAGAATTGGAAGAGGAAGATATATGTTACTCATCCGGAGGGTTTTGAGGTTCCAAATGAAAAACACAAGGTGTATAGATTGTCAAATGCTCTTTACGGATTGAGGCAAGCTCCACAAGCTTGGAACATTCGACTTGATAGGAGTCTCAAAGATCTTGGTTTTAGAAAATGCACTCAAGAGCAAGCAATCTACACAAGAAGAGAAAAAGAGGAATATGTTCTTGTTGGAGTGTATGTTGACGATCTCATTGTAACAGGAAGAATTGAAGTTGAACAACAGAAGGGTCGAATCATGCTCAAACAACCAACTTATGCCAAAAGAATTTTGTCCCAATTTGGAATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCATAAAGACACAGAAGAAGCACCAATTGATGCTACGAAGTATAGAAGCATCTTTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGGTATTTGAGAGGGACGATTCATTTTGGGCTCACTTATACGAAAGGTCCCAGAGAATTCAATATATTCGGTTACTCAGACAGTGATTTAGCTGGTGATCTCGACAGGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACGGTGGCACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCTACTACCGCAGCTTGCCAAGCATTGTGGTTAAGATGCCTTGTTAGCGAGATAGTCGGAATGGAGCCAAGGCCGGTAACATTATTTGTGGACAACAAATCCGCGATAGCTCTCATGAAGAATCCCGTATTTCATGGTCGCAACAAGCACATAGATACATGTTTTCATTTCATTCGAGAGTGTGTCAAGAATGGACAAATTATCGTTGAAGTTGTCAACACTGGAGAACAACGAGCCGATGTCCTGACTAAAGCATTGACGGGAGTAAAGTTAGCTGCTATGCGTCAACTACTTGGTGTTCGTAAGTTAGAATCATGCCAGAATTAG

Coding sequence (CDS)

ATGGAGAATTGGAAGAGGAAGATATATGTTACTCATCCGGAGGGTTTTGAGGTTCCAAATGAAAAACACAAGGTGTATAGATTGTCAAATGCTCTTTACGGATTGAGGCAAGCTCCACAAGCTTGGAACATTCGACTTGATAGGAGTCTCAAAGATCTTGGTTTTAGAAAATGCACTCAAGAGCAAGCAATCTACACAAGAAGAGAAAAAGAGGAATATGTTCTTGTTGGAGTGTATGTTGACGATCTCATTGTAACAGGAAGAATTGAAGTTGAACAACAGAAGGGTCGAATCATGCTCAAACAACCAACTTATGCCAAAAGAATTTTGTCCCAATTTGGAATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCATAAAGACACAGAAGAAGCACCAATTGATGCTACGAAGTATAGAAGCATCTTTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGGTATTTGAGAGGGACGATTCATTTTGGGCTCACTTATACGAAAGGTCCCAGAGAATTCAATATATTCGGTTACTCAGACAGTGATTTAGCTGGTGATCTCGACAGGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACGGTGGCACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCTACTACCGCAGCTTGCCAAGCATTGTGGTTAAGATGCCTTGTTAGCGAGATAGTCGGAATGGAGCCAAGGCCGGTAACATTATTTGTGGACAACAAATCCGCGATAGCTCTCATGAAGAATCCCGTATTTCATGGTCGCAACAAGCACATAGATACATGTTTTCATTTCATTCGAGAGTGTGTCAAGAATGGACAAATTATCGTTGAAGTTGTCAACACTGGAGAACAACGAGCCGATGTCCTGACTAAAGCATTGACGGGAGTAAAGTTAGCTGCTATGCGTCAACTACTTGGTGTTCGTAAGTTAGAATCATGCCAGAATTAG

Homology

[Close]

BLAST of CSPI07G01990 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.4e-60
Identity = 134/396 (33.84%), Postives = 219/396 (55.30%), Query Frame = 1


Query: 5    KRKIYVTHPEGFEVPNEKHKVYRLSNALYGLRQAPQAWNIRLDRSLKDLGFRKCTQEQAI 64
            + +IY+  PEGFEV  +KH V +L+ +LYGL+QAP+ W ++ D  +K   + K   +  +
Sbjct: 933  EEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCV 992

Query: 65   YTRREKEE-YVLVGVYVDDLIVTGR-------------------------------IEVE 124
            Y +R  E  ++++ +YVDD+++ G+                               I  E
Sbjct: 993  YFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRE 1052

Query: 125  QQKGRIMLKQPTYAKRILSQFGMADCNATKYPMEPKAQLHKDT------EEAPIDATKYR 184
            +   ++ L Q  Y +R+L +F M +      P+    +L K        E+  +    Y 
Sbjct: 1053 RTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYS 1112

Query: 185  SIFGCLRY-LLNTRPDLSYVVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGP 244
            S  G L Y ++ TRPD+++ VG+ SR++E P   H++ VK ILRYLRGT    L +  G 
Sbjct: 1113 SAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF--GG 1172

Query: 245  REFNIFGYSDSDLAGDLDRRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEFIAATTA 304
             +  + GY+D+D+AGD+D RKS++G  F  +   +SW S+ QK VALS+ EAE+IAAT  
Sbjct: 1173 SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATET 1232

Query: 305  ACQALWLRCLVSEIVGMEPRPVTLFVDNKSAIALMKNPVFHGRNKHIDTCFHFIRECVKN 362
              + +WL+  + E+ G+  +   ++ D++SAI L KN ++H R KHID  +H+IRE V +
Sbjct: 1233 GKEMIWLKRFLQEL-GLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDD 1292

[Close]

BLAST of CSPI07G01990 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 215.3 bits (547), Expect = 1.1e-54
Identity = 136/391 (34.78%), Postives = 210/391 (53.71%), Query Frame = 1


Query: 5    KRKIYVTHPEGFEVPNEKHKVYRLSNALYGLRQAPQAWNIRLDRSLKDLGFRKCTQEQAI 64
            K +IY+  P+G    ++   V +L+ A+YGL+QA + W    +++LK+  F   + ++ I
Sbjct: 1013 KEEIYMRLPQGISCNSDN--VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCI 1072

Query: 65   YT--RREKEEYVLVGVYVDDLIV-TGR----------------------------IEVEQ 124
            Y   +    E + V +YVDD+++ TG                             I +E 
Sbjct: 1073 YILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEM 1132

Query: 125  QKGRIMLKQPTYAKRILSQFGMADCNATKYPMEPKAQLHKDTEEAPIDATKYRSIFGCLR 184
            Q+ +I L Q  Y K+ILS+F M +CNA   P+  K        +   + T  RS+ GCL 
Sbjct: 1133 QEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCN-TPCRSLIGCLM 1192

Query: 185  YL-LNTRPDLSYVVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPR-EFNIF 244
            Y+ L TRPDL+  V + SRY  +  +  ++ +K++LRYL+GTI   L + K    E  I 
Sbjct: 1193 YIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKII 1252

Query: 245  GYSDSDLAGDLDRRKSTSGMTFYLNE-SLVSWNSQKQKTVALSSCEAEFIAATTAACQAL 304
            GY DSD AG    RKST+G  F + + +L+ WN+++Q +VA SS EAE++A   A  +AL
Sbjct: 1253 GYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREAL 1312

Query: 305  WLRCLVSEIVGMEPRPVTLFVDNKSAIALMKNPVFHGRNKHIDTCFHFIRECVKNGQIIV 362
            WL+ L++ I      P+ ++ DN+  I++  NP  H R KHID  +HF RE V+N  I +
Sbjct: 1313 WLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICL 1372

[Close]

BLAST of CSPI07G01990 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-27
Identity = 66/183 (36.07%), Postives = 104/183 (56.83%), Query Frame = 1


Query: 89  IEVEQQKGRIMLKQPTYAKRILSQFGMADCNATKYPMEPKAQLHKDTEEAPIDATKYRSI 148
           I+++     + L Q  YA++IL+  GM DC     P+  K      T + P D + +RSI
Sbjct: 45  IQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSI 104

Query: 149 FGCLRYLLNTRPDLSYVVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPREF 208
            G L+YL  TRPD+SY V +  + M  PT   + ++K++LRY++GTI  GL Y     + 
Sbjct: 105 VGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGL-YIHKNSKL 164

Query: 209 NIFGYSDSDLAGDLDRRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEFIAATTAACQ 268
           N+  + DSD AG    R+ST+G   +L  +++SW++++Q TV+ SS E E+ A    A +
Sbjct: 165 NVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAE 224

Query: 269 ALW 272
             W
Sbjct: 225 LTW 225

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BLAST of CSPI07G01990 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 4.9e-26
Identity = 87/288 (30.21%), Postives = 130/288 (45.14%), Query Frame = 1


Query: 8   IYVTHPEGFEVPNEKHKVYRLSNALYGLRQAPQAWNIRLDRSLKDLGFRKCTQEQAIYTR 67
           IYV  P GF        V+ L   +YGL+QAP  WN  ++ +LK +GF +   E  +Y R
Sbjct: 16  IYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKIGFCRHEGEHGLYFR 75

Query: 68  REKEEYVLVGVYVDDLIVTG-------RIEVEQQK-----------------------GR 127
              +  + + VYVDDL+V         R++ E  K                       G 
Sbjct: 76  STSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQSSNGD 135

Query: 128 IMLKQPTYAKRILSQFGMADCNATKYPMEPKAQLHKDTEEAPIDATKYRSIFGCLRYLLN 187
           I L    Y  +  S+  +     T+ P+     L + T     D T Y+SI G L +  N
Sbjct: 136 ITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDITPYQSIVGQLLFCAN 195

Query: 188 T-RPDLSYVVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPREFNIFGYSDS 247
           T RPD+SY V + SR++  P  +H +  +++LRYL  T    L Y  G  +  +  Y D+
Sbjct: 196 TGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSG-SQLALTVYCDA 255

Query: 248 DLAGDLDRRKSTSGMTFYLNESLVSWNSQKQK-TVALSSCEAEFIAAT 264
                 D   ST G    L  + V+W+S+K K  + + S EAE+I A+
Sbjct: 256 SHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYITAS 302

[Close]

BLAST of CSPI07G01990 vs. Swiss-Prot
Match: YH41B_YEAST (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.6e-06
Identity = 26/86 (30.23%), Postives = 48/86 (55.81%), Query Frame = 1


Query: 5    KRKIYVTHPEGFEVPNEKHKVYRLSNALYGLRQAPQAWNIRLDRSLKDLGFRKCTQEQAI 64
            + +IY+ HP      +++  V +L+ ALYGL+Q+P+ WN  L + L  +G +  +    +
Sbjct: 1394 EEEIYIPHP------HDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGL 1453

Query: 65   YTRREKEEYVLVGVYVDDLIVTGRIE 91
            Y   +K   +++ VYVDD ++    E
Sbjct: 1454 YQTEDKN--LMIAVYVDDCVIAASNE 1471

[Close]

BLAST of CSPI07G01990 vs. TrEMBL
Match: B8BDZ6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 7.9e-132
Identity = 242/394 (61.42%), Postives = 289/394 (73.35%), Query Frame = 1


Query: 5    KRKIYVTHPEGFEVPNEKHKVYRLSNALYGLRQAPQAWNIRLDRSLKDLGFRKCTQEQAI 64
            + ++YV  PEGF    E+H V RLS ALYGLRQAP+AWN RLD+ LK+LGF +CTQEQA+
Sbjct: 1034 EEEVYVAQPEGFVKRGEEHLVLRLSKALYGLRQAPRAWNTRLDKCLKELGFARCTQEQAV 1093

Query: 65   YTRREKEEYVLVGVYVDDLIVTG-----------------------------RIEVEQQK 124
            YTR + +  V+VGVYVDDLIVTG                              IEV Q +
Sbjct: 1094 YTRGKGQAGVIVGVYVDDLIVTGENPQEIAMFKQQMMGEFEMSDLGLLSYYLGIEVIQGE 1153

Query: 125  GRIMLKQPTYAKRILSQFGMADCNATKYPMEPKAQLHKDTEEAPIDATKYRSIFGCLRYL 184
              I +KQ  YAK+ILSQFGM  CN T  PMEP++ LHKD +  PIDAT+YR + GCLRYL
Sbjct: 1154 NGIAIKQAAYAKKILSQFGMQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYL 1213

Query: 185  LNTRPDLSYVVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPREFNIFGYSD 244
            L+TRPDLSY VG+ASR+MERPTTMH K VK ILRYL+GT+  GL +  G    +I G++D
Sbjct: 1214 LHTRPDLSYAVGVASRFMERPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTD 1273

Query: 245  SDLAGDLDRRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEFIAATTAACQALWLRCL 304
            SDLAGD+D R+ST GM FY+N SLVSW SQKQKTVALSSCEAEF+AAT AAC ALWLR L
Sbjct: 1274 SDLAGDMDDRRSTGGMAFYVNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRAL 1333

Query: 305  VSEIVGMEPRPVTLFVDNKSAIALMKNPVFHGRNKHIDTCFHFIRECVKNGQIIVEVVNT 364
            +SE++G E +PV LFVDNKSAIALMKNPVFHGR+KHIDT +HFIRECV++GQI++E V++
Sbjct: 1334 LSEMMGTEAKPVKLFVDNKSAIALMKNPVFHGRSKHIDTRYHFIRECVESGQILIEFVSS 1393

Query: 365  GEQRADVLTKALTGVKLAAMRQLLGVRKLESCQN 370
             EQRAD +TK L   KLA  R LLGVR L   Q+
Sbjct: 1394 EEQRADAMTKGLPAAKLATARHLLGVRDLRPRQD 1427

[Close]

BLAST of CSPI07G01990 vs. TrEMBL
Match: Q10RM4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g05850 PE=4 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 1.3e-131
Identity = 240/394 (60.91%), Postives = 290/394 (73.60%), Query Frame = 1


Query: 5    KRKIYVTHPEGFEVPNEKHKVYRLSNALYGLRQAPQAWNIRLDRSLKDLGFRKCTQEQAI 64
            + ++YV  PEGF    ++H V +L  ALYGLRQAP+AWNIRLDRSL++LGF +CTQEQA+
Sbjct: 1016 EEEVYVAQPEGFARSGKEHLVLKLHKALYGLRQAPRAWNIRLDRSLRELGFDRCTQEQAV 1075

Query: 65   YTRREKEEYVLVGVYVDDLIVT---------------GR--------------IEVEQQK 124
            YTR    + ++VGVYVDDLIVT               G               IEV+Q +
Sbjct: 1076 YTRGRGSDGIIVGVYVDDLIVTGENPSELKVFKEQMMGEFEMSDLGLLTYYLGIEVDQDE 1135

Query: 125  GRIMLKQPTYAKRILSQFGMADCNATKYPMEPKAQLHKDTEEAPIDATKYRSIFGCLRYL 184
                LKQ  YAK++LSQFGM +CN+   P++P++QL KD E  P+DAT+YR I G LRYL
Sbjct: 1136 SATTLKQTAYAKKLLSQFGMMECNSVSIPIDPRSQLSKDPEGHPVDATEYRRIIGSLRYL 1195

Query: 185  LNTRPDLSYVVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPREFNIFGYSD 244
            L+TRPDLSY VG+ASR+MERPT MH+K VKQILRY++GT+ +GL Y  G     I GY+D
Sbjct: 1196 LHTRPDLSYAVGVASRFMERPTVMHFKAVKQILRYIKGTMDYGLVYAAGTGALKITGYTD 1255

Query: 245  SDLAGDLDRRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEFIAATTAACQALWLRCL 304
            SDLAGDLD R+ST GM FY+N+SLV+W+SQKQKTVALSSCEAEF+AATTAACQALWLR L
Sbjct: 1256 SDLAGDLDDRRSTGGMAFYINQSLVAWSSQKQKTVALSSCEAEFMAATTAACQALWLRLL 1315

Query: 305  VSEIVGMEPRPVTLFVDNKSAIALMKNPVFHGRNKHIDTCFHFIRECVKNGQIIVEVVNT 364
            ++E+ G+E + V LFVDN+SAIALMKNPVFHGR+KHIDT +HFIRECV  GQI+VE V T
Sbjct: 1316 LAEVAGVEEKAVKLFVDNRSAIALMKNPVFHGRSKHIDTRYHFIRECVDGGQIVVEFVRT 1375

Query: 365  GEQRADVLTKALTGVKLAAMRQLLGVRKLESCQN 370
             EQRAD LTK L   KL   R LLGVR L S QN
Sbjct: 1376 EEQRADALTKGLPAAKLVTARHLLGVRSLGSRQN 1409

[Close]

BLAST of CSPI07G01990 vs. TrEMBL
Match: Q0J8A6_ORYSJ (Os08g0125300 protein OS=Oryza sativa subsp. japonica GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 1.1e-130
Identity = 241/394 (61.17%), Postives = 287/394 (72.84%), Query Frame = 1


Query: 5    KRKIYVTHPEGFEVPNEKHKVYRLSNALYGLRQAPQAWNIRLDRSLKDLGFRKCTQEQAI 64
            + ++YV  PEGF    E+H V RLS ALYGLRQAP+AWN RLD+ LK+LGF +CTQEQA+
Sbjct: 1034 EEEVYVAQPEGFVKRGEEHLVLRLSKALYGLRQAPRAWNTRLDKCLKELGFARCTQEQAV 1093

Query: 65   YTRREKEEYVLVGVYVDDLIVTG-----------------------------RIEVEQQK 124
            YTR + +  V+VGVYVDDLIVTG                              IEV Q +
Sbjct: 1094 YTRGKGQAGVIVGVYVDDLIVTGENPHEIAMFKQQMMGEFEMSDLGLLSYYLGIEVIQGE 1153

Query: 125  GRIMLKQPTYAKRILSQFGMADCNATKYPMEPKAQLHKDTEEAPIDATKYRSIFGCLRYL 184
              I +KQ  YAK+ILSQFGM  CN T  PMEP++ LHKD +  PIDAT+YR + GCLRYL
Sbjct: 1154 NGIAIKQAAYAKKILSQFGMQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYL 1213

Query: 185  LNTRPDLSYVVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPREFNIFGYSD 244
            L+TRPDLSY VG+ASR+MERPTTMH K VK ILRYL+GT+  GL +  G    +I G++D
Sbjct: 1214 LHTRPDLSYAVGVASRFMERPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTD 1273

Query: 245  SDLAGDLDRRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEFIAATTAACQALWLRCL 304
            SDLAGD+D R+ST GM FY+N SLVSW SQKQKTVALSSCEAEF+AAT AAC ALWLR L
Sbjct: 1274 SDLAGDMDDRRSTGGMAFYVNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRAL 1333

Query: 305  VSEIVGMEPRPVTLFVDNKSAIALMKNPVFHGRNKHIDTCFHFIRECVKNGQIIVEVVNT 364
            +SE++G E + V LFVDNKSAIALMKNPVFHGR+KHIDT +HFIRECV++GQI++E V +
Sbjct: 1334 LSEMMGTEAKRVKLFVDNKSAIALMKNPVFHGRSKHIDTRYHFIRECVESGQILIEFVRS 1393

Query: 365  GEQRADVLTKALTGVKLAAMRQLLGVRKLESCQN 370
             EQRAD +TK L   KLA  R LLGVR L   Q+
Sbjct: 1394 EEQRADAMTKGLPAAKLATARHLLGVRDLRPRQD 1427

[Close]

BLAST of CSPI07G01990 vs. TrEMBL
Match: Q84SW8_ORYSJ (Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 2.5e-117
Identity = 218/358 (60.89%), Postives = 268/358 (74.86%), Query Frame = 1


Query: 5    KRKIYVTHPEGFEVPNEKHKVYRLSNALYGLRQAPQAWNIRLDRSLKDLGFRKCTQEQAI 64
            + ++YV+ PEGF    ++H VY+LS ALYGLRQAP+AWN RLDRS+K+LGF +C QEQA+
Sbjct: 989  EEEVYVSQPEGFVEKGKEHLVYKLSKALYGLRQAPRAWNTRLDRSMKELGFSRCAQEQAV 1048

Query: 65   YTRREKEEYVLVGVYVDDLIVTGRIEVEQQKGRIMLKQPTYAKRILSQFGMADCNATKYP 124
            YTR      ++VGVYVDDLIVTG    E        KQ     +++ +F M+D     Y 
Sbjct: 1049 YTRGTGSTGIIVGVYVDDLIVTG----ESPSDITAFKQ-----QMMGEFEMSDLGLLTYY 1108

Query: 125  MEPKAQLHKDTEEAPIDATKYRSIFGCLRYLLNTRPDLSYVVGMASRYMERPTTMHYKVV 184
            +    +LHKD + + +D T+YR + GCLRYLL+TRPDLSY VG+ASR+MERPT MH+K V
Sbjct: 1109 LG--IELHKDAQGSTVDPTEYRRVIGCLRYLLHTRPDLSYAVGVASRFMERPTVMHFKAV 1168

Query: 185  KQILRYLRGTIHFGLTYTKGPREFNIFGYSDSDLAGDLDRRKSTSGMTFYLNESLVSWNS 244
            KQILRYL+GTI+ GL ++ G     I G++DSDLAGD D R+STSGM FY N SLVSW+S
Sbjct: 1169 KQILRYLKGTINCGLMFSGGNGAVEITGFTDSDLAGDSDDRRSTSGMAFYFNGSLVSWSS 1228

Query: 245  QKQKTVALSSCEAEFIAATTAACQALWLRCLVSEIVGMEPRPVTLFVDNKSAIALMKNPV 304
            QKQKTVALSSCEAEF+AAT AAC ALWLR L+ E++G E RPV L+VDNKSAIALMKNPV
Sbjct: 1229 QKQKTVALSSCEAEFMAATAAACHALWLRGLLIEMIGAEARPVKLYVDNKSAIALMKNPV 1288

Query: 305  FHGRNKHIDTCFHFIRECVKNGQIIVEVVNTGEQRADVLTKALTGVKLAAMRQLLGVR 363
            FHGR+KHIDT +HFIRECV++G+I +E V   EQRAD LTK L   +LA  R LLGVR
Sbjct: 1289 FHGRSKHIDTRYHFIRECVESGKIQIEFVRIEEQRADALTKGLPAARLATARHLLGVR 1335

[Close]

BLAST of CSPI07G01990 vs. TrEMBL
Match: Q84MV7_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=Os03g28110 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 3.3e-114
Identity = 216/369 (58.54%), Postives = 263/369 (71.27%), Query Frame = 1


Query: 5    KRKIYVTHPEGFEVPNEKHKVYRLSNALYGLRQAPQAWNIRLDRSLKDLGFRKCTQEQAI 64
            + ++YV   EGF    ++H V +LS ALYGLRQAP+AWNI LD+SLK+LGF +C QEQA+
Sbjct: 919  EEEVYVAQLEGFIKKGQEHLVLKLSKALYGLRQAPRAWNICLDKSLKELGFMRCKQEQAV 978

Query: 65   YTRREKEEYVLVGVYVDDLIVTGRIEVEQQKGRIMLKQPTYAKRILSQFGMADCNATKY- 124
            YTR    E ++VGVYVDDLIVTG     +   R+      + K+++ +F M D     Y 
Sbjct: 979  YTRGRGAEAMIVGVYVDDLIVTG-----ENPARV----EAFKKQMMGEFEMNDLGLLSYY 1038

Query: 125  --------PMEPKAQLHKDTEEAPIDATKYRSIFGCLRYLLNTRPDLSYVVGMASRYMER 184
                    P++PK QL KD +  P+DA +YR + GCLRYLL+TRPDLSY VG+ASR+ME 
Sbjct: 1039 LGIEVGQVPVDPKTQLQKDADGHPVDAIEYRRVIGCLRYLLHTRPDLSYAVGVASRFMEH 1098

Query: 185  PTTMHYKVVKQILRYLRGTIHFGLTYTKGPREFNIFGYSDSDLAGDLDRRKSTSGMTFYL 244
            PT  H K VKQILRYL+GTI  GL YT G  E  I GY+DSDLAGD+D R+ST GM FY+
Sbjct: 1099 PTMTHLKAVKQILRYLKGTIDCGLVYTAGIGEITITGYTDSDLAGDVDDRRSTGGMAFYI 1158

Query: 245  NESLVSWNSQKQKTVALSSCEAEFIAATTAACQALWLRCLVSEIVGMEPRPVTLFVDNKS 304
            N SLV+W+SQKQKTV LSSCEAEF+AAT AAC ALWLR L+ E++G E + V LFVDNKS
Sbjct: 1159 NNSLVAWSSQKQKTVTLSSCEAEFMAATAAACHALWLRALLGELLGEEAKLVKLFVDNKS 1218

Query: 305  AIALMKNPVFHGRNKHIDTCFHFIRECVKNGQIIVEVVNTGEQRADVLTKALTGVKLAAM 364
            AIALMKNPVF GR+KHIDT + FIREC++  QI+VE V + EQRAD LTK L   KL   
Sbjct: 1219 AIALMKNPVFRGRSKHIDTRYQFIRECIERRQILVEFVRSEEQRADALTKGLPAAKLVTA 1278

[Close]

BLAST of CSPI07G01990 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 167.9 bits (424), Expect = 1.2e-41
Identity = 104/348 (29.89%), Postives = 166/348 (47.70%), Query Frame = 1


Query: 7   KIYVTHPEGFEVPN----EKHKVYRLSNALYGLRQAPQAWNIRLDRSLKDLGFRKCTQEQ 66
           +IY+  P G+          + V  L  ++YGL+QA + W ++   +L   GF +   + 
Sbjct: 207 EIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDH 266

Query: 67  AIYTRREKEEYVLVGVYVDDLIVTG-----------------------------RIEVEQ 126
             + +     ++ V VYVDD+I+                                +E+ +
Sbjct: 267 TYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIAR 326

Query: 127 QKGRIMLKQPTYAKRILSQFGMADCNATKYPMEPKAQLHKDTEEAPIDATKYRSIFGCLR 186
               I + Q  YA  +L + G+  C  +  PM+P       +    +DA  YR + G L 
Sbjct: 327 SAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLM 386

Query: 187 YLLNTRPDLSYVVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPREFNIFGY 246
           YL  TR D+S+ V   S++ E P   H + V +IL Y++GT+  GL Y+    E  +  +
Sbjct: 387 YLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS-QAEMQLQVF 446

Query: 247 SDSDLAGDLDRRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEFIAATTAACQALWLR 306
           SD+      D R+ST+G   +L  SL+SW S+KQ+ V+ SS EAE+ A + A  + +WL 
Sbjct: 447 SDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLA 506

Query: 307 CLVSEIVGMEPRPVTLFVDNKSAIALMKNPVFHGRNKHIDTCFHFIRE 322
               E+     +P  LF DN +AI +  N VFH R KHI++  H +RE
Sbjct: 507 QFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of CSPI07G01990 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 125.2 bits (313), Expect = 8.6e-29
Identity = 66/183 (36.07%), Postives = 104/183 (56.83%), Query Frame = 1


Query: 89  IEVEQQKGRIMLKQPTYAKRILSQFGMADCNATKYPMEPKAQLHKDTEEAPIDATKYRSI 148
           I+++     + L Q  YA++IL+  GM DC     P+  K      T + P D + +RSI
Sbjct: 45  IQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSI 104

Query: 149 FGCLRYLLNTRPDLSYVVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPREF 208
            G L+YL  TRPD+SY V +  + M  PT   + ++K++LRY++GTI  GL Y     + 
Sbjct: 105 VGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGL-YIHKNSKL 164

Query: 209 NIFGYSDSDLAGDLDRRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEFIAATTAACQ 268
           N+  + DSD AG    R+ST+G   +L  +++SW++++Q TV+ SS E E+ A    A +
Sbjct: 165 NVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAE 224

Query: 269 ALW 272
             W
Sbjct: 225 LTW 225

[Close]

BLAST of CSPI07G01990 vs. NCBI nr
Match: gi|218201855|gb|EEC84282.1| (hypothetical protein OsI_30754 [Oryza sativa Indica Group])

HSP 1 Score: 478.4 bits (1230), Expect = 1.1e-131
Identity = 242/394 (61.42%), Postives = 289/394 (73.35%), Query Frame = 1


Query: 5    KRKIYVTHPEGFEVPNEKHKVYRLSNALYGLRQAPQAWNIRLDRSLKDLGFRKCTQEQAI 64
            + ++YV  PEGF    E+H V RLS ALYGLRQAP+AWN RLD+ LK+LGF +CTQEQA+
Sbjct: 1034 EEEVYVAQPEGFVKRGEEHLVLRLSKALYGLRQAPRAWNTRLDKCLKELGFARCTQEQAV 1093

Query: 65   YTRREKEEYVLVGVYVDDLIVTG-----------------------------RIEVEQQK 124
            YTR + +  V+VGVYVDDLIVTG                              IEV Q +
Sbjct: 1094 YTRGKGQAGVIVGVYVDDLIVTGENPQEIAMFKQQMMGEFEMSDLGLLSYYLGIEVIQGE 1153

Query: 125  GRIMLKQPTYAKRILSQFGMADCNATKYPMEPKAQLHKDTEEAPIDATKYRSIFGCLRYL 184
              I +KQ  YAK+ILSQFGM  CN T  PMEP++ LHKD +  PIDAT+YR + GCLRYL
Sbjct: 1154 NGIAIKQAAYAKKILSQFGMQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYL 1213

Query: 185  LNTRPDLSYVVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPREFNIFGYSD 244
            L+TRPDLSY VG+ASR+MERPTTMH K VK ILRYL+GT+  GL +  G    +I G++D
Sbjct: 1214 LHTRPDLSYAVGVASRFMERPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTD 1273

Query: 245  SDLAGDLDRRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEFIAATTAACQALWLRCL 304
            SDLAGD+D R+ST GM FY+N SLVSW SQKQKTVALSSCEAEF+AAT AAC ALWLR L
Sbjct: 1274 SDLAGDMDDRRSTGGMAFYVNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRAL 1333

Query: 305  VSEIVGMEPRPVTLFVDNKSAIALMKNPVFHGRNKHIDTCFHFIRECVKNGQIIVEVVNT 364
            +SE++G E +PV LFVDNKSAIALMKNPVFHGR+KHIDT +HFIRECV++GQI++E V++
Sbjct: 1334 LSEMMGTEAKPVKLFVDNKSAIALMKNPVFHGRSKHIDTRYHFIRECVESGQILIEFVSS 1393

Query: 365  GEQRADVLTKALTGVKLAAMRQLLGVRKLESCQN 370
             EQRAD +TK L   KLA  R LLGVR L   Q+
Sbjct: 1394 EEQRADAMTKGLPAAKLATARHLLGVRDLRPRQD 1427

[Close]

BLAST of CSPI07G01990 vs. NCBI nr
Match: gi|108706239|gb|ABF94034.1| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 477.6 bits (1228), Expect = 1.9e-131
Identity = 240/394 (60.91%), Postives = 290/394 (73.60%), Query Frame = 1


Query: 5    KRKIYVTHPEGFEVPNEKHKVYRLSNALYGLRQAPQAWNIRLDRSLKDLGFRKCTQEQAI 64
            + ++YV  PEGF    ++H V +L  ALYGLRQAP+AWNIRLDRSL++LGF +CTQEQA+
Sbjct: 1016 EEEVYVAQPEGFARSGKEHLVLKLHKALYGLRQAPRAWNIRLDRSLRELGFDRCTQEQAV 1075

Query: 65   YTRREKEEYVLVGVYVDDLIVT---------------GR--------------IEVEQQK 124
            YTR    + ++VGVYVDDLIVT               G               IEV+Q +
Sbjct: 1076 YTRGRGSDGIIVGVYVDDLIVTGENPSELKVFKEQMMGEFEMSDLGLLTYYLGIEVDQDE 1135

Query: 125  GRIMLKQPTYAKRILSQFGMADCNATKYPMEPKAQLHKDTEEAPIDATKYRSIFGCLRYL 184
                LKQ  YAK++LSQFGM +CN+   P++P++QL KD E  P+DAT+YR I G LRYL
Sbjct: 1136 SATTLKQTAYAKKLLSQFGMMECNSVSIPIDPRSQLSKDPEGHPVDATEYRRIIGSLRYL 1195

Query: 185  LNTRPDLSYVVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPREFNIFGYSD 244
            L+TRPDLSY VG+ASR+MERPT MH+K VKQILRY++GT+ +GL Y  G     I GY+D
Sbjct: 1196 LHTRPDLSYAVGVASRFMERPTVMHFKAVKQILRYIKGTMDYGLVYAAGTGALKITGYTD 1255

Query: 245  SDLAGDLDRRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEFIAATTAACQALWLRCL 304
            SDLAGDLD R+ST GM FY+N+SLV+W+SQKQKTVALSSCEAEF+AATTAACQALWLR L
Sbjct: 1256 SDLAGDLDDRRSTGGMAFYINQSLVAWSSQKQKTVALSSCEAEFMAATTAACQALWLRLL 1315

Query: 305  VSEIVGMEPRPVTLFVDNKSAIALMKNPVFHGRNKHIDTCFHFIRECVKNGQIIVEVVNT 364
            ++E+ G+E + V LFVDN+SAIALMKNPVFHGR+KHIDT +HFIRECV  GQI+VE V T
Sbjct: 1316 LAEVAGVEEKAVKLFVDNRSAIALMKNPVFHGRSKHIDTRYHFIRECVDGGQIVVEFVRT 1375

Query: 365  GEQRADVLTKALTGVKLAAMRQLLGVRKLESCQN 370
             EQRAD LTK L   KL   R LLGVR L S QN
Sbjct: 1376 EEQRADALTKGLPAAKLVTARHLLGVRSLGSRQN 1409

[Close]

BLAST of CSPI07G01990 vs. NCBI nr
Match: gi|113622864|dbj|BAF22809.1| (Os08g0125300 [Oryza sativa Japonica Group])

HSP 1 Score: 474.6 bits (1220), Expect = 1.6e-130
Identity = 241/394 (61.17%), Postives = 287/394 (72.84%), Query Frame = 1


Query: 5    KRKIYVTHPEGFEVPNEKHKVYRLSNALYGLRQAPQAWNIRLDRSLKDLGFRKCTQEQAI 64
            + ++YV  PEGF    E+H V RLS ALYGLRQAP+AWN RLD+ LK+LGF +CTQEQA+
Sbjct: 1034 EEEVYVAQPEGFVKRGEEHLVLRLSKALYGLRQAPRAWNTRLDKCLKELGFARCTQEQAV 1093

Query: 65   YTRREKEEYVLVGVYVDDLIVTG-----------------------------RIEVEQQK 124
            YTR + +  V+VGVYVDDLIVTG                              IEV Q +
Sbjct: 1094 YTRGKGQAGVIVGVYVDDLIVTGENPHEIAMFKQQMMGEFEMSDLGLLSYYLGIEVIQGE 1153

Query: 125  GRIMLKQPTYAKRILSQFGMADCNATKYPMEPKAQLHKDTEEAPIDATKYRSIFGCLRYL 184
              I +KQ  YAK+ILSQFGM  CN T  PMEP++ LHKD +  PIDAT+YR + GCLRYL
Sbjct: 1154 NGIAIKQAAYAKKILSQFGMQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYL 1213

Query: 185  LNTRPDLSYVVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPREFNIFGYSD 244
            L+TRPDLSY VG+ASR+MERPTTMH K VK ILRYL+GT+  GL +  G    +I G++D
Sbjct: 1214 LHTRPDLSYAVGVASRFMERPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTD 1273

Query: 245  SDLAGDLDRRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEFIAATTAACQALWLRCL 304
            SDLAGD+D R+ST GM FY+N SLVSW SQKQKTVALSSCEAEF+AAT AAC ALWLR L
Sbjct: 1274 SDLAGDMDDRRSTGGMAFYVNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRAL 1333

Query: 305  VSEIVGMEPRPVTLFVDNKSAIALMKNPVFHGRNKHIDTCFHFIRECVKNGQIIVEVVNT 364
            +SE++G E + V LFVDNKSAIALMKNPVFHGR+KHIDT +HFIRECV++GQI++E V +
Sbjct: 1334 LSEMMGTEAKRVKLFVDNKSAIALMKNPVFHGRSKHIDTRYHFIRECVESGQILIEFVRS 1393

Query: 365  GEQRADVLTKALTGVKLAAMRQLLGVRKLESCQN 370
             EQRAD +TK L   KLA  R LLGVR L   Q+
Sbjct: 1394 EEQRADAMTKGLPAAKLATARHLLGVRDLRPRQD 1427

[Close]

BLAST of CSPI07G01990 vs. NCBI nr
Match: gi|29150404|gb|AAO72413.1| (gag-pol polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 430.3 bits (1105), Expect = 3.5e-117
Identity = 218/358 (60.89%), Postives = 268/358 (74.86%), Query Frame = 1


Query: 5    KRKIYVTHPEGFEVPNEKHKVYRLSNALYGLRQAPQAWNIRLDRSLKDLGFRKCTQEQAI 64
            + ++YV+ PEGF    ++H VY+LS ALYGLRQAP+AWN RLDRS+K+LGF +C QEQA+
Sbjct: 989  EEEVYVSQPEGFVEKGKEHLVYKLSKALYGLRQAPRAWNTRLDRSMKELGFSRCAQEQAV 1048

Query: 65   YTRREKEEYVLVGVYVDDLIVTGRIEVEQQKGRIMLKQPTYAKRILSQFGMADCNATKYP 124
            YTR      ++VGVYVDDLIVTG    E        KQ     +++ +F M+D     Y 
Sbjct: 1049 YTRGTGSTGIIVGVYVDDLIVTG----ESPSDITAFKQ-----QMMGEFEMSDLGLLTYY 1108

Query: 125  MEPKAQLHKDTEEAPIDATKYRSIFGCLRYLLNTRPDLSYVVGMASRYMERPTTMHYKVV 184
            +    +LHKD + + +D T+YR + GCLRYLL+TRPDLSY VG+ASR+MERPT MH+K V
Sbjct: 1109 LG--IELHKDAQGSTVDPTEYRRVIGCLRYLLHTRPDLSYAVGVASRFMERPTVMHFKAV 1168

Query: 185  KQILRYLRGTIHFGLTYTKGPREFNIFGYSDSDLAGDLDRRKSTSGMTFYLNESLVSWNS 244
            KQILRYL+GTI+ GL ++ G     I G++DSDLAGD D R+STSGM FY N SLVSW+S
Sbjct: 1169 KQILRYLKGTINCGLMFSGGNGAVEITGFTDSDLAGDSDDRRSTSGMAFYFNGSLVSWSS 1228

Query: 245  QKQKTVALSSCEAEFIAATTAACQALWLRCLVSEIVGMEPRPVTLFVDNKSAIALMKNPV 304
            QKQKTVALSSCEAEF+AAT AAC ALWLR L+ E++G E RPV L+VDNKSAIALMKNPV
Sbjct: 1229 QKQKTVALSSCEAEFMAATAAACHALWLRGLLIEMIGAEARPVKLYVDNKSAIALMKNPV 1288

Query: 305  FHGRNKHIDTCFHFIRECVKNGQIIVEVVNTGEQRADVLTKALTGVKLAAMRQLLGVR 363
            FHGR+KHIDT +HFIRECV++G+I +E V   EQRAD LTK L   +LA  R LLGVR
Sbjct: 1289 FHGRSKHIDTRYHFIRECVESGKIQIEFVRIEEQRADALTKGLPAARLATARHLLGVR 1335

[Close]

BLAST of CSPI07G01990 vs. NCBI nr
Match: gi|30017513|gb|AAP12935.1| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 419.9 bits (1078), Expect = 4.8e-114
Identity = 216/369 (58.54%), Postives = 263/369 (71.27%), Query Frame = 1


Query: 5    KRKIYVTHPEGFEVPNEKHKVYRLSNALYGLRQAPQAWNIRLDRSLKDLGFRKCTQEQAI 64
            + ++YV   EGF    ++H V +LS ALYGLRQAP+AWNI LD+SLK+LGF +C QEQA+
Sbjct: 919  EEEVYVAQLEGFIKKGQEHLVLKLSKALYGLRQAPRAWNICLDKSLKELGFMRCKQEQAV 978

Query: 65   YTRREKEEYVLVGVYVDDLIVTGRIEVEQQKGRIMLKQPTYAKRILSQFGMADCNATKY- 124
            YTR    E ++VGVYVDDLIVTG     +   R+      + K+++ +F M D     Y 
Sbjct: 979  YTRGRGAEAMIVGVYVDDLIVTG-----ENPARV----EAFKKQMMGEFEMNDLGLLSYY 1038

Query: 125  --------PMEPKAQLHKDTEEAPIDATKYRSIFGCLRYLLNTRPDLSYVVGMASRYMER 184
                    P++PK QL KD +  P+DA +YR + GCLRYLL+TRPDLSY VG+ASR+ME 
Sbjct: 1039 LGIEVGQVPVDPKTQLQKDADGHPVDAIEYRRVIGCLRYLLHTRPDLSYAVGVASRFMEH 1098

Query: 185  PTTMHYKVVKQILRYLRGTIHFGLTYTKGPREFNIFGYSDSDLAGDLDRRKSTSGMTFYL 244
            PT  H K VKQILRYL+GTI  GL YT G  E  I GY+DSDLAGD+D R+ST GM FY+
Sbjct: 1099 PTMTHLKAVKQILRYLKGTIDCGLVYTAGIGEITITGYTDSDLAGDVDDRRSTGGMAFYI 1158

Query: 245  NESLVSWNSQKQKTVALSSCEAEFIAATTAACQALWLRCLVSEIVGMEPRPVTLFVDNKS 304
            N SLV+W+SQKQKTV LSSCEAEF+AAT AAC ALWLR L+ E++G E + V LFVDNKS
Sbjct: 1159 NNSLVAWSSQKQKTVTLSSCEAEFMAATAAACHALWLRALLGELLGEEAKLVKLFVDNKS 1218

Query: 305  AIALMKNPVFHGRNKHIDTCFHFIRECVKNGQIIVEVVNTGEQRADVLTKALTGVKLAAM 364
            AIALMKNPVF GR+KHIDT + FIREC++  QI+VE V + EQRAD LTK L   KL   
Sbjct: 1219 AIALMKNPVFRGRSKHIDTRYQFIRECIERRQILVEFVRSEEQRADALTKGLPAAKLVTA 1278

The following BLAST results are available for this feature:

BLAST of CSPI07G01990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	1.4e-60	33.84	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	1.1e-54	34.78	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
M810_ARATH	1.5e-27	36.07	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0...	[more]
YCH4_YEAST	4.9e-26	30.21	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]
YH41B_YEAST	5.6e-06	30.23	Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of CSPI07G01990 vs. TrEMBL


Match Name	E-value	Identity	Description
B8BDZ6_ORYSI	7.9e-132	61.42	Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4...	[more]
Q10RM4_ORYSJ	1.3e-131	60.91	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]
Q0J8A6_ORYSJ	1.1e-130	61.17	Os08g0125300 protein OS=Oryza sativa subsp. japonica GN=Os08g0125300 PE=2 SV=1	[more]
Q84SW8_ORYSJ	2.5e-117	60.89	Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1	[more]
Q84MV7_ORYSJ	3.3e-114	58.54	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]

BLAST of CSPI07G01990 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	1.2e-41	29.89	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	8.6e-29	36.07	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CSPI07G01990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|218201855\|gb\|EEC84282.1\|	1.1e-131	61.42	hypothetical protein OsI_30754 [Oryza sativa Indica Group]	[more]
gi\|108706239\|gb\|ABF94034.1\|	1.9e-131	60.91	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	[more]
gi\|113622864\|dbj\|BAF22809.1\|	1.6e-130	61.17	Os08g0125300 [Oryza sativa Japonica Group]	[more]
gi\|29150404\|gb\|AAO72413.1\|	3.5e-117	60.89	gag-pol polyprotein [Oryza sativa Japonica Group]	[more]
gi\|30017513\|gb\|AAP12935.1\|	4.8e-114	58.54	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009536	plastid
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G01990.1	CSPI07G01990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 89..126 score: 6.8E-6coord: 5..87 score: 2.1
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 8..286 score: 5.5E
None	No IPR available	PANTHER	PTHR11439:SF127	SUBFAMILY NOT NAMED	coord: 8..286 score: 5.5E
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 16..317 score: 8.45

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G01990	CsaV3_7G018740	Cucumber (Chinese Long) v3	cpicucB416

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G01990	Silver-seed gourd	carcpiB0235
CSPI07G01990	Silver-seed gourd	carcpiB1103
CSPI07G01990	Cucumber (Chinese Long) v3	cpicucB415
CSPI07G01990	Watermelon (97103) v2	cpiwmbB553
CSPI07G01990	Wax gourd	cpiwgoB681
CSPI07G01990	Cucumber (Gy14) v1	cgycpiB112
CSPI07G01990	Cucurbita maxima (Rimu)	cmacpiB149
CSPI07G01990	Cucurbita maxima (Rimu)	cmacpiB533
CSPI07G01990	Cucurbita moschata (Rifu)	cmocpiB131
CSPI07G01990	Cucurbita moschata (Rifu)	cmocpiB524
CSPI07G01990	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G01990	Cucurbita pepo (Zucchini)	cpecpiB692
CSPI07G01990	Cucumber (Gy14) v2	cgybcpiB332