CSPI06G32910 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G32910
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 27541119 .. 27541313 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAAAAAATGGGGCTGTGAGGCCTCACTTGATCACCACAACGGTACAACAATCACTTCTCTCAAAGTAAAAGATGACGCAAACAAGGTGGCACCACACGAGTCATCCATCCACGTCATATATGGAGAGACGGAAAGCACGTGCGACGACCAAGTCCGTAATTCCAACTCCCGTATTCATCAACTCCTCTAA

mRNA sequence

ATGGTTAAAAAATGGGGCTGTGAGGCCTCACTTGATCACCACAACGGTACAACAATCACTTCTCTCAAAGTAAAAGATGACGCAAACAAGGTGGCACCACACGAGTCATCCATCCACGTCATATATGGAGAGACGGAAAGCACGTGCGACGACCAAGTCCGTAATTCCAACTCCCGTATTCATCAACTCCTCTAA

Coding sequence (CDS)

ATGGTTAAAAAATGGGGCTGTGAGGCCTCACTTGATCACCACAACGGTACAACAATCACTTCTCTCAAAGTAAAAGATGACGCAAACAAGGTGGCACCACACGAGTCATCCATCCACGTCATATATGGAGAGACGGAAAGCACGTGCGACGACCAAGTCCGTAATTCCAACTCCCGTATTCATCAACTCCTCTAA
Homology
[Close]
BLAST of CSPI06G32910 vs. TrEMBL
Match: A0A0A0KH66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511360 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 9.2e-28
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 1 

Query: 1  MVKKWGCEASLDHHNGTTITSLKVKDDANKVAPHESSIHVIYGETESTCDDQVRNSNSRI 60
          MV+KWGCEASLDHH+GTTITSLKVKDDANKV PHESSIHVIYGETESTCDDQVRN NSRI
Sbjct: 1  MVQKWGCEASLDHHSGTTITSLKVKDDANKVPPHESSIHVIYGETESTCDDQVRNFNSRI 60

Query: 61 HQLL 65
          HQLL
Sbjct: 61 HQLL 64

[Close]
BLAST of CSPI06G32910 vs. NCBI nr
Match: gi|700193841|gb|KGN49045.1| (hypothetical protein Csa_6G511360 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-27
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 1 

Query: 1  MVKKWGCEASLDHHNGTTITSLKVKDDANKVAPHESSIHVIYGETESTCDDQVRNSNSRI 60
          MV+KWGCEASLDHH+GTTITSLKVKDDANKV PHESSIHVIYGETESTCDDQVRN NSRI
Sbjct: 1  MVQKWGCEASLDHHSGTTITSLKVKDDANKVPPHESSIHVIYGETESTCDDQVRNFNSRI 60

Query: 61 HQLL 65
          HQLL
Sbjct: 61 HQLL 64

The following BLAST results are available for this feature:
BLAST of CSPI06G32910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G32910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH66_CUCSA9.2e-2893.75Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511360 PE=4 SV=1[more]
BLAST of CSPI06G32910 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G32910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193841|gb|KGN49045.1|1.3e-2793.75hypothetical protein Csa_6G511360 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G32910.1CSPI06G32910.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G32910CsaV3_6G048370Cucumber (Chinese Long) v3cpicucB363
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G32910Cucurbita pepo (Zucchini)cpecpiB080
CSPI06G32910Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G32910Cucurbita pepo (Zucchini)cpecpiB528
CSPI06G32910Bottle gourd (USVL1VR-Ls)cpilsiB439
CSPI06G32910Bottle gourd (USVL1VR-Ls)cpilsiB447
CSPI06G32910Melon (DHL92) v3.6.1cpimedB496
CSPI06G32910Cucumber (Gy14) v2cgybcpiB038
CSPI06G32910Cucumber (Gy14) v2cgybcpiB042
CSPI06G32910Cucumber (Gy14) v2cgybcpiB287
CSPI06G32910Silver-seed gourdcarcpiB0446
CSPI06G32910Silver-seed gourdcarcpiB0672
CSPI06G32910Cucumber (Chinese Long) v3cpicucB318
CSPI06G32910Watermelon (97103) v2cpiwmbB433
CSPI06G32910Watermelon (97103) v2cpiwmbB436
CSPI06G32910Wax gourdcpiwgoB634
CSPI06G32910Wild cucumber (PI 183967)cpicpiB039
CSPI06G32910Wild cucumber (PI 183967)cpicpiB049
CSPI06G32910Watermelon (97103) v1cpiwmB519
CSPI06G32910Cucumber (Gy14) v1cgycpiB028
CSPI06G32910Cucurbita maxima (Rimu)cmacpiB428
CSPI06G32910Cucurbita maxima (Rimu)cmacpiB689
CSPI06G32910Cucurbita maxima (Rimu)cmacpiB893
CSPI06G32910Cucurbita moschata (Rifu)cmocpiB681
CSPI06G32910Cucurbita moschata (Rifu)cmocpiB873
CSPI06G32910Cucumber (Chinese Long) v2cpicuB262
CSPI06G32910Cucumber (Chinese Long) v2cpicuB313
CSPI06G32910Melon (DHL92) v3.5.1cpimeB451
CSPI06G32910Melon (DHL92) v3.5.1cpimeB512
CSPI06G32910Watermelon (Charleston Gray)cpiwcgB453