CSPI06G32730 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G32730
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 27471308 .. 27472207 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGATTGTTGTGTAAAGGCGTGATAGACAGTGCGGGACCTCAGAAGAATTGTTTTGGTGTCTTCAAATTATTTTGGTTGTAGTTCAAATAACCAATAAAAATTTAGAGTAGAAAGAGCTTAACTTTATGCCTTTGACCGCTCACCCTCTCTCTACCTCTCTTCTTCTAATCCACCAGAAACCAGAAGCTAAATCCATTTTTATTACTTTCTTCTTCTCCCTTGCCTCTTCTCTCTCTCTCCCATTTCTCTCAGGGGTTGAGCTACTCGGAGAAGTCTTTCGACAGCACTCCTTTTATTCTGCCAAGAAAAGCAAAGCTGCTCAGCTCCAGTTCTTGAAATTTTCTTCTTCTTCTTCTTCTTTTTTGGGTATACTTTTCGGCTTCTCTCCCTTTGCTTTTTGGTTTTCTTGCCTTTGTTCTTCAAGGGTCTGCATCTTCTTATCTTCTTCTTGTGTTTCTCGCATCTGGGTCGCGACCTGGCTTTGGATCTGTGATGGGGTTTCAACGAAAACTTTTGTTAAGTGAGAAAGATCTGGCCTTTTGGCTCTTACAAGTTCACATTAGCTGTGGATCATGTTTATGGAGTTCGTTTAGTAATTTTGATTCAGTTTTGACTAGTTGAAATTGTACCCAGAAACTGCATTTGCAGTGGCTATGTTGCTCTACTGATACTTCGCTTTGTTGCTCATTTTTTCTGTTAATTTTTGCCTCAAAATTTCATTGCTTTCGCTGATTTTTACCTCCGTAACGCATCTGCATCTTGTCCGTTTGTATGGGTCACTTAATTCTTTTTCATACTTTTTTCATAGATCATTTGTTGCTTTCGGTCGACACAAAGGAGAAACTAGGATGGGCTGCTAATGTGAGGCAGAATGGTCCGGAGAACAGTTGCTGA

mRNA sequence

ATGAAGGGATTGTTGTGTAAAGGCGTGATAGACAGTGCGGGACCTCAGAAGAATTGTTTTGGGGTTGAGCTACTCGGAGAAGTCTTTCGACAGCACTCCTTTTATTCTGCCAAGAAAAGCAAAGCTGCTCAGCTCCAGTTCTTGAAATTTTCTTCTTCTTCTTCTTCTTTTTTGGATCATTTGTTGCTTTCGGTCGACACAAAGGAGAAACTAGGATGGGCTGCTAATGTGAGGCAGAATGGTCCGGAGAACAGTTGCTGA

Coding sequence (CDS)

ATGAAGGGATTGTTGTGTAAAGGCGTGATAGACAGTGCGGGACCTCAGAAGAATTGTTTTGGGGTTGAGCTACTCGGAGAAGTCTTTCGACAGCACTCCTTTTATTCTGCCAAGAAAAGCAAAGCTGCTCAGCTCCAGTTCTTGAAATTTTCTTCTTCTTCTTCTTCTTTTTTGGATCATTTGTTGCTTTCGGTCGACACAAAGGAGAAACTAGGATGGGCTGCTAATGTGAGGCAGAATGGTCCGGAGAACAGTTGCTGA
Homology
[Close]
BLAST of CSPI06G32730 vs. TrEMBL
Match: A0A0A0KL18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510940 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1  MKGLLCKGVIDSAGPQKNCFGVELLGEVFRQHSFYSAKKSKAAQLQFLKFSSSSSSFLDH 60
          MKGLLCKGVIDSAGPQKNCFGVELLGEVFRQHSFYSAKKSKAAQLQFLKFSSSSSSFLDH
Sbjct: 1  MKGLLCKGVIDSAGPQKNCFGVELLGEVFRQHSFYSAKKSKAAQLQFLKFSSSSSSFLDH 60

Query: 61 LLLSVDTKEKLGWAANVRQNGPENSC 87
          LLLSVDTKEKLGWAANVRQNGPENSC
Sbjct: 61 LLLSVDTKEKLGWAANVRQNGPENSC 86

[Close]
BLAST of CSPI06G32730 vs. NCBI nr
Match: gi|700193823|gb|KGN49027.1| (hypothetical protein Csa_6G510940 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 2.8e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1  MKGLLCKGVIDSAGPQKNCFGVELLGEVFRQHSFYSAKKSKAAQLQFLKFSSSSSSFLDH 60
          MKGLLCKGVIDSAGPQKNCFGVELLGEVFRQHSFYSAKKSKAAQLQFLKFSSSSSSFLDH
Sbjct: 1  MKGLLCKGVIDSAGPQKNCFGVELLGEVFRQHSFYSAKKSKAAQLQFLKFSSSSSSFLDH 60

Query: 61 LLLSVDTKEKLGWAANVRQNGPENSC 87
          LLLSVDTKEKLGWAANVRQNGPENSC
Sbjct: 61 LLLSVDTKEKLGWAANVRQNGPENSC 86

The following BLAST results are available for this feature:
BLAST of CSPI06G32730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G32730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL18_CUCSA2.0e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510940 PE=4 SV=1[more]
BLAST of CSPI06G32730 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G32730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193823|gb|KGN49027.1|2.8e-41100.00hypothetical protein Csa_6G510940 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G32730.1CSPI06G32730.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G32730Csa6G510940Cucumber (Chinese Long) v2cpicuB313
CSPI06G32730CsaV3_6G048180Cucumber (Chinese Long) v3cpicucB363
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G32730Wax gourdcpiwgoB634
CSPI06G32730Wild cucumber (PI 183967)cpicpiB039
CSPI06G32730Wild cucumber (PI 183967)cpicpiB049
CSPI06G32730Watermelon (97103) v1cpiwmB519
CSPI06G32730Cucumber (Gy14) v1cgycpiB028
CSPI06G32730Cucurbita maxima (Rimu)cmacpiB428
CSPI06G32730Cucurbita maxima (Rimu)cmacpiB689
CSPI06G32730Cucurbita maxima (Rimu)cmacpiB893
CSPI06G32730Cucurbita moschata (Rifu)cmocpiB681
CSPI06G32730Cucurbita moschata (Rifu)cmocpiB873
CSPI06G32730Cucumber (Chinese Long) v2cpicuB262
CSPI06G32730Melon (DHL92) v3.5.1cpimeB451
CSPI06G32730Melon (DHL92) v3.5.1cpimeB508
CSPI06G32730Watermelon (Charleston Gray)cpiwcgB453
CSPI06G32730Watermelon (Charleston Gray)cpiwcgB456
CSPI06G32730Cucurbita pepo (Zucchini)cpecpiB080
CSPI06G32730Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G32730Cucurbita pepo (Zucchini)cpecpiB528
CSPI06G32730Bottle gourd (USVL1VR-Ls)cpilsiB439
CSPI06G32730Bottle gourd (USVL1VR-Ls)cpilsiB448
CSPI06G32730Melon (DHL92) v3.6.1cpimedB493
CSPI06G32730Cucumber (Gy14) v2cgybcpiB038
CSPI06G32730Cucumber (Gy14) v2cgybcpiB042
CSPI06G32730Cucumber (Gy14) v2cgybcpiB287
CSPI06G32730Silver-seed gourdcarcpiB0446
CSPI06G32730Silver-seed gourdcarcpiB0672
CSPI06G32730Cucumber (Chinese Long) v3cpicucB318
CSPI06G32730Watermelon (97103) v2cpiwmbB433
CSPI06G32730Watermelon (97103) v2cpiwmbB437