CSPI06G31100 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G31100
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 26557366 .. 26557857 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCACCATTAATTTCACTGCACAGTGCTTTCATCGAGCTTCATCTCTTTCCCATATTTCACATTCTGCACCTGCAGCCGCCGTGGCCATGGAGGATAAAGACAACAATATCTGGAGAGATCGGCAAAGACAAAGCCTAATTACTACCTTTCCCAAAAACCAGCATAGAAATTTCAGTAAAACAACACCAGATTCGGCATCTATATGTAATCGTTTGCCATTTTCCCTATCTTGTTTTTATTCGTTTTCGAGAATTATTGTCATCGTCGCCATCGATGAATCATTCTCGTGTTTATCGCTTCTTTGGACTTCAGCATCCAGACAATTTGTTTTTTCAGGATTCGTATTTCACTTCAAATACCACTTTCCTTGTTCCTCCCATCTTTCTTTTTTTATATTTTTTTGTTTATTGTATCGCTTAATTCAGCGGCATTGGTTTCTTATATTTCCCAACAGTTCTGAAACTCTTCTCCTCCATTGGTTGTTGCGA

mRNA sequence

ATGCCCACCATTAATTTCACTGCACAGTGCTTTCATCGAGCTTCATCTCTTTCCCATATTTCACATTCTGCACCTGCAGCCGCCGTGGCCATGGAGGATAAAGACAACAATATCTGGAGAGATCGGCAAAGACAAAGCCTAATTACTACCTTTCCCAAAAACCAGCATAGAAATTTCAGTAAAACAACACCAGATTCGGCATCTATATGTAATCGTTTGCCATTTTCCCTATCTTGTTTTTATTCGTTTTCGAGAATTATTGTCATCGTCGCCATCGATGAATCATTCTCGTGTTTATCGCTTCTTTGGACTTCAGCATCCAGACAATTTGTTTTTTCAGGATTCCGGCATTGGTTTCTTATATTTCCCAACAGTTCTGAAACTCTTCTCCTCCATTGGTTGTTGCGA

Coding sequence (CDS)

ATGCCCACCATTAATTTCACTGCACAGTGCTTTCATCGAGCTTCATCTCTTTCCCATATTTCACATTCTGCACCTGCAGCCGCCGTGGCCATGGAGGATAAAGACAACAATATCTGGAGAGATCGGCAAAGACAAAGCCTAATTACTACCTTTCCCAAAAACCAGCATAGAAATTTCAGTAAAACAACACCAGATTCGGCATCTATATGTAATCGTTTGCCATTTTCCCTATCTTGTTTTTATTCGTTTTCGAGAATTATTGTCATCGTCGCCATCGATGAATCATTCTCGTGTTTATCGCTTCTTTGGACTTCAGCATCCAGACAATTTGTTTTTTCAGGATTCCGGCATTGGTTTCTTATATTTCCCAACAGTTCTGAAACTCTTCTCCTCCATTGGTTGTTGCGA
Homology
[Close]
BLAST of CSPI06G31100 vs. TrEMBL
Match: A0A0A0KH12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502790 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 2.8e-71
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MPTINFTAQCFHRASSLSHISHSAPAAAVAMEDKDNNIWRDRQRQSLITTFPKNQHRNFS 60
           MPTINFTAQCFHRASSLSHISHSAPAAAVAMEDKDNNIWRDRQRQSLITTFPKNQHRNFS
Sbjct: 1   MPTINFTAQCFHRASSLSHISHSAPAAAVAMEDKDNNIWRDRQRQSLITTFPKNQHRNFS 60

Query: 61  KTTPDSASICNRLPFSLSCFYSFSRIIVIVAIDESFSCLSLLWTSASRQFVFSGFRHWFL 120
           KTTPDSASICNRLPFSLSCFYSFSRIIVIVAIDESFSCLSLLWTSASRQFVFSGFRHWFL
Sbjct: 61  KTTPDSASICNRLPFSLSCFYSFSRIIVIVAIDESFSCLSLLWTSASRQFVFSGFRHWFL 120

Query: 121 IFPNSSETLLLHWLLR 137
           IFPNSSETLLLHWLLR
Sbjct: 121 IFPNSSETLLLHWLLR 136

[Close]
BLAST of CSPI06G31100 vs. NCBI nr
Match: gi|700193639|gb|KGN48843.1| (hypothetical protein Csa_6G502790 [Cucumis sativus])

HSP 1 Score: 275.8 bits (704), Expect = 4.1e-71
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MPTINFTAQCFHRASSLSHISHSAPAAAVAMEDKDNNIWRDRQRQSLITTFPKNQHRNFS 60
           MPTINFTAQCFHRASSLSHISHSAPAAAVAMEDKDNNIWRDRQRQSLITTFPKNQHRNFS
Sbjct: 1   MPTINFTAQCFHRASSLSHISHSAPAAAVAMEDKDNNIWRDRQRQSLITTFPKNQHRNFS 60

Query: 61  KTTPDSASICNRLPFSLSCFYSFSRIIVIVAIDESFSCLSLLWTSASRQFVFSGFRHWFL 120
           KTTPDSASICNRLPFSLSCFYSFSRIIVIVAIDESFSCLSLLWTSASRQFVFSGFRHWFL
Sbjct: 61  KTTPDSASICNRLPFSLSCFYSFSRIIVIVAIDESFSCLSLLWTSASRQFVFSGFRHWFL 120

Query: 121 IFPNSSETLLLHWLLR 137
           IFPNSSETLLLHWLLR
Sbjct: 121 IFPNSSETLLLHWLLR 136

The following BLAST results are available for this feature:
BLAST of CSPI06G31100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G31100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH12_CUCSA2.8e-71100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502790 PE=4 SV=1[more]
BLAST of CSPI06G31100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G31100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193639|gb|KGN48843.1|4.1e-71100.00hypothetical protein Csa_6G502790 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G31100.1CSPI06G31100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G31100Csa6G502790Cucumber (Chinese Long) v2cpicuB313
CSPI06G31100CsaV3_6G046390Cucumber (Chinese Long) v3cpicucB363
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G31100Cucumber (Chinese Long) v3cpicucB322
CSPI06G31100Cucumber (Chinese Long) v3cpicucB336
CSPI06G31100Cucumber (Chinese Long) v3cpicucB352
CSPI06G31100Watermelon (97103) v2cpiwmbB433
CSPI06G31100Watermelon (97103) v2cpiwmbB489
CSPI06G31100Watermelon (97103) v2cpiwmbB507
CSPI06G31100Watermelon (97103) v2cpiwmbB529
CSPI06G31100Wax gourdcpiwgoB561
CSPI06G31100Wax gourdcpiwgoB627
CSPI06G31100Wax gourdcpiwgoB652
CSPI06G31100Wild cucumber (PI 183967)cpicpiB077
CSPI06G31100Wild cucumber (PI 183967)cpicpiB127
CSPI06G31100Wild cucumber (PI 183967)cpicpiB163
CSPI06G31100Watermelon (97103) v1cpiwmB519
CSPI06G31100Cucumber (Gy14) v1cgycpiB178
CSPI06G31100Cucumber (Gy14) v1cgycpiB510
CSPI06G31100Cucurbita maxima (Rimu)cmacpiB036
CSPI06G31100Cucurbita maxima (Rimu)cmacpiB349
CSPI06G31100Cucurbita maxima (Rimu)cmacpiB487
CSPI06G31100Cucurbita maxima (Rimu)cmacpiB689
CSPI06G31100Cucurbita maxima (Rimu)cmacpiB893
CSPI06G31100Cucurbita moschata (Rifu)cmocpiB026
CSPI06G31100Cucurbita moschata (Rifu)cmocpiB185
CSPI06G31100Cucurbita moschata (Rifu)cmocpiB342
CSPI06G31100Cucurbita moschata (Rifu)cmocpiB478
CSPI06G31100Cucurbita moschata (Rifu)cmocpiB681
CSPI06G31100Cucurbita moschata (Rifu)cmocpiB873
CSPI06G31100Cucumber (Chinese Long) v2cpicuB271
CSPI06G31100Cucumber (Chinese Long) v2cpicuB285
CSPI06G31100Cucumber (Chinese Long) v2cpicuB302
CSPI06G31100Melon (DHL92) v3.5.1cpimeB478
CSPI06G31100Melon (DHL92) v3.5.1cpimeB488
CSPI06G31100Melon (DHL92) v3.5.1cpimeB504
CSPI06G31100Melon (DHL92) v3.5.1cpimeB508
CSPI06G31100Watermelon (Charleston Gray)cpiwcgB453
CSPI06G31100Watermelon (Charleston Gray)cpiwcgB498
CSPI06G31100Watermelon (Charleston Gray)cpiwcgB515
CSPI06G31100Watermelon (Charleston Gray)cpiwcgB539
CSPI06G31100Watermelon (97103) v1cpiwmB489
CSPI06G31100Watermelon (97103) v1cpiwmB499
CSPI06G31100Watermelon (97103) v1cpiwmB513
CSPI06G31100Cucurbita pepo (Zucchini)cpecpiB080
CSPI06G31100Cucurbita pepo (Zucchini)cpecpiB231
CSPI06G31100Cucurbita pepo (Zucchini)cpecpiB468
CSPI06G31100Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G31100Cucurbita pepo (Zucchini)cpecpiB586
CSPI06G31100Cucurbita pepo (Zucchini)cpecpiB849
CSPI06G31100Bottle gourd (USVL1VR-Ls)cpilsiB439
CSPI06G31100Bottle gourd (USVL1VR-Ls)cpilsiB458
CSPI06G31100Bottle gourd (USVL1VR-Ls)cpilsiB477
CSPI06G31100Bottle gourd (USVL1VR-Ls)cpilsiB493
CSPI06G31100Melon (DHL92) v3.6.1cpimedB468
CSPI06G31100Melon (DHL92) v3.6.1cpimedB474
CSPI06G31100Melon (DHL92) v3.6.1cpimedB490
CSPI06G31100Melon (DHL92) v3.6.1cpimedB493
CSPI06G31100Cucumber (Gy14) v2cgybcpiB078
CSPI06G31100Cucumber (Gy14) v2cgybcpiB143
CSPI06G31100Cucumber (Gy14) v2cgybcpiB190
CSPI06G31100Cucumber (Gy14) v2cgybcpiB287
CSPI06G31100Silver-seed gourdcarcpiB0446
CSPI06G31100Silver-seed gourdcarcpiB0794
CSPI06G31100Silver-seed gourdcarcpiB0985
CSPI06G31100Silver-seed gourdcarcpiB1019
CSPI06G31100Silver-seed gourdcarcpiB1058