CSPI06G30990 (gene) Wild cucumber (PI 183967)

NameCSPI06G30990
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Description50S ribosomal protein L6, putative
LocationChr6 : 26494529 .. 26497680 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACATTTCAGTCGGGTCTTCAAAGGGTTATTCCTACAATTTTTCCAATACTTATCTGAAAAAAAAAATGTTTTCGCTTTTTTATAAACCATATTACCTTCGGCCACTGCAGCCGCCCCGTAGCACGCCGCCGTTCACCCCACTTCGCGCGCTGTTTCCGTTCCGACCACGCTCGTTACCTCTCTGTCGTAGCACAATCTTTAATCGCAAGCCCTTATAATCCCTCCTCCTCTCAATCACTCACTCGCCCTACTTCCAGGTTTGTCCATTCTAGGTCTTCCTCAGTTACGGTTCCTACTATCTCGATTGTGTATATATATCTTTCATAGTTCCAAAATGTTGTTCGCGTGTCTAATATCAACGAGGCATTAGCATGAGTAAGGTACTGACTATTTTTTTCCAGCACTGTAACCGTGATTGTATGGTTATGCTCGCAGTTTTGTTTATTACTGATGTATACACCTTAGATAATCTGGTGTTTGATTACTTTTTTTTTTTGCATGATTATTGTGGTTTTGTCAAATGAAGATCACGGCTCTTTTATTCTTGACATTATGAGTATCTCTTTGCAAATCTTCTCTATGTGGAAGATTATTAGCTGTGTCCTTTAGTTTCAAAATACTCAAATTCTCGAGACATGAATTGTAACTTGTTACGATCTTTTGTTTGAATGGCTCTATTGTTGAAGCAGCTTCTTTACTTTGTCTGAATGTGATGTGATTTCCATAACCATGGTATTCATCTTTGCATTTTGATTTCTTTTTCTTTTTATCCCGGTAAAGTTCTTTTATTGATGTTGCCCGAGTTGGTAAGCTTATTACATTCATATTTTTATATAATCCTTTGCCATTGTTCTCCCTATATTATAGCTATATTATCAGTAAAGATACTATTTTCTGAGTTTTGTATTTCAATCTTAATATTGAAGCTTCAGCTATCACATCTCCCTTCGCAATTGAGTTTTAAATTTTATATTAATTAAAGTCTAAACTTTACCTTGTTCTGTGTTTTTTCCCACCATTATTTTCCCCATTTTTGAGTGAGGTTCAATCTTAATCTTGAAGCAGGACTGTTGTTTGTGAGGCTACTATGTAATACTACATTAAGAAAAGAAATCATAGTTGAAGTGGACATGAAAGAAAGCCCCTAAACATAAGGAATTTTGATTTCAAGCTTAGTAAATTTGATTCTTTTATTTAATAAAGGAAAAGCCCTAGTTATTTTACTAGTTTTCAAAAACAATTAAAAAGTTCCAAGGGCCAAGGGCCAAGGGCTTCGCGGAATGTGTGCACCTTATTTTTTAAACATAGCATCTACTATGGGCTCTCTTAACAAAGGTCAATAAGGGCAGGTATAATACAAAACTTGGAGGAAATGAGTTTATCTCATGGTGGTCACCTATCTAGAATTTAATAATCTACGAGTTTCTTTTGTGTCCATATGTTGTAGGTAGAGGTAAAAAGGTTATTTTGTAAGATTGGTCAAGGTGCACAAGCAAGTTGGTGAGGGCACTAACAAATAGAAAAATATATTTGTTTACTTGTGCCGTGGGGGGGTTTCAGGGGGTGCTTTGGCATCCATATGGTGTGGAGTAAAGGGGTTGCCATGTAAGATTAGTCAAGGCATGCTTGCAAAGTTGGTAAGGATACCTGCGTAGGTGTTGATGAGCTTTATAGCAGCACCTAGAGGACCTTCAGAGGGTGATTGGTGGATCAGATGGGTCAACATTGTCTTCTTTCTCATCTGGTTATCTCATTTTCGTTCATATGGGGATCAAGATAATAGGGTGACATGGGGATGAGGAATGATTGACGAGATGATGGATTATCTTGATCATTAATTTTATCTCTTTATACTTTAGATTCACCATGCTAAATTTATCTCAACCTAATAATTTGACTTTGAAGTATGGTGGTAATTTGATGTTCTTTTGGATCAGAAAACTTTAGTCACATGAACAATTTGCGTTGGCAGGAAACAGGTTGGGTTGTATACATACCATATACCTGTGTGATGAAAGATTCAGGCTGGGTGGTTCCAGGTTTTGGAATCTCTCGAATTAGATCGATATAATTTTATAGGTTTAGTTTATAAATTCAATCCACTCGATGCTAGCTAGTAACTTTAATATCAGGGTTTTTTTAAGTAAATTATCATATCAGGTTTTGAACCAATGATCTTGTGAGATTTCTAAGTAATTGAAACTAATTGCTGCCCGTTCTTCTTGGCTCACCAAATTATCATTGGTGATTTATTTTCGAAGTTCATTTCCAATCCAATTACAGTTTTAATGTATACATACAAGCCCATTGACAATGAACTTTGCTGCTTGTTTAATGTTTAACCATTCCTATATCGTCTTTTTCCAACAAATATGAAATATGATATATTAAATATCAGTAGACTAAGTAGTTTGTGAATTTCATCTTAATAGGTAAGCGGAAACTATAATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGTTACAAAGCCAGAGCTGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGTTGAACTAACTGTTCCGCCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAACAAAGGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATGTCGACGAGGTCATAAAGAGGAAACAAGGAAAGAAGTCTAAATAAGATAACAGAAGCACAAAATCCCTCATTGATCTCTATTCAGACACAAAGTGCCTCAGTTATGAATAATTGTTCTTGTTGTATGCATGTTTTTAGAGCATTCCATGAATTAAGCCATGCGACTGAGACTGTAATTGCTTCAATGCCTATTCTTGAAATTTCGTCTCATCGATCATTAATGTTGAATGTTGAAGAATGCAGGCCATGCAAGAAAAGGCTATTTGAGTTGAGGGTTGTTGACCATTAATCCTTTTTTTCCAATGTGAGATTGAGCCTCTGACCATGTTGATCATTGAGGTTCAACTCTTGAACTATTATTAGTAACGCCTTCTTTTCTTCGCAAGATGTTTAAGCCAATTTTCTCACGAACCTTCATTAAAAGTTTCAAACAAAACAGC

mRNA sequence

ATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGTTACAAAGCCAGAGCTGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGTTGAACTAACTGTTCCGCCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAACAAAGGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATGTCGACGAGGTCATAAAGAGGAAACAAGGAAAGAAGTCTAAATAA

Coding sequence (CDS)

ATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGTTACAAAGCCAGAGCTGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGTTGAACTAACTGTTCCGCCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAACAAAGGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATGTCGACGAGGTCATAAAGAGGAAACAAGGAAAGAAGTCTAAATAA
BLAST of CSPI06G30990 vs. Swiss-Prot
Match: RM06_MARPO (60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 7.2e-36
Identity = 69/100 (69.00%), Postives = 83/100 (83.00%), Query Frame = 1

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFF FL+I+GVGYKA   A G +LYLKLG+SHE+ L V P+VRVFC K N++CCTG+
Sbjct: 1   MEAKFFCFLEIIGVGYKASTNAQGSILYLKLGFSHEIRLQVTPSVRVFCLKPNLICCTGM 60

Query: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK 101
           D Q+V QFAA V+SCKPPEVYKGKGI Y +E+I +KQGKK
Sbjct: 61  DHQKVTQFAAIVKSCKPPEVYKGKGIQYRNEIIHKKQGKK 100

BLAST of CSPI06G30990 vs. Swiss-Prot
Match: RL6_SYNJA (50S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplF PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-19
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1

Query: 5   FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQR 64
           F R L++VGVGY  RA   G  L L +GYSH VE+  PP +++    NNV+  +GIDK+ 
Sbjct: 83  FERRLELVGVGY--RASTQGNKLILNVGYSHPVEIPFPPGIQIAVEGNNVIVVSGIDKEL 142

Query: 65  VHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 103
           V   AA +R+ +PPE YKGKGI YV E ++RK GK  K
Sbjct: 143 VGNTAARIRAVRPPEPYKGKGIRYVGEQVRRKAGKSGK 178

BLAST of CSPI06G30990 vs. Swiss-Prot
Match: RL6_BEII9 (50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplF PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.6e-19
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 1

Query: 5   FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQR 64
           F R L+I GVGYKA  +  G+ L L LGYSH++   +P  + +   K   V  TGIDKQR
Sbjct: 83  FERKLEITGVGYKAAVQ--GKNLQLSLGYSHDISFPIPDGIAIAAPKPTEVSITGIDKQR 142

Query: 65  VHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK 101
           V Q AA +R+ +PPE YKGKG+ Y  E I RK+GKK
Sbjct: 143 VGQIAAEIRALRPPEPYKGKGVKYAGEFIFRKEGKK 176

BLAST of CSPI06G30990 vs. Swiss-Prot
Match: RL6_LACSS (50S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplF PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.6e-19
Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 1

Query: 5   FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQR 64
           F + L ++GVGY  RA+  G+ L L +GYSH VE+  P  V V    N  +  +GI KQ+
Sbjct: 82  FKKTLDLIGVGY--RAQLKGKTLVLNVGYSHPVEMEAPEGVNVEVPSNTNIIISGISKQK 141

Query: 65  VHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 103
           V QFAA +R  +PPE YKGKGI Y DE ++RK+GK  K
Sbjct: 142 VGQFAAEIRDVRPPEPYKGKGIRYTDEHVRRKEGKTGK 177

BLAST of CSPI06G30990 vs. Swiss-Prot
Match: RL6_LACCB (50S ribosomal protein L6 OS=Lactobacillus casei (strain BL23) GN=rplF PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.0e-19
Identity = 50/94 (53.19%), Postives = 61/94 (64.89%), Query Frame = 1

Query: 9   LKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQF 68
           +K+VGVGY  RA+  G  L L +GYSH VE+T P  V V       +  +GI KQ V QF
Sbjct: 85  MKLVGVGY--RAQKQGEKLVLNVGYSHPVEMTAPKGVTVEVPSTTQIIISGISKQVVGQF 144

Query: 69  AAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 103
           AA VRS + PE YKGKGI YVDE ++RK+GK  K
Sbjct: 145 AAVVRSVRAPEPYKGKGIRYVDEHVRRKEGKTGK 176

BLAST of CSPI06G30990 vs. TrEMBL
Match: A0A0A0KJ40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502670 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 103
           DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 102

BLAST of CSPI06G30990 vs. TrEMBL
Match: I1KDT7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G239200 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.6e-50
Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 1

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNV+CCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGI 60

Query: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 103
           DKQRVHQFAA VR+CKPPEVYKGKGIMYVDEVIK+KQGKKSK
Sbjct: 61  DKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102

BLAST of CSPI06G30990 vs. TrEMBL
Match: K7KX08_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.6e-50
Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 1

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNV+CCTGI
Sbjct: 24  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGI 83

Query: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 103
           DKQRVHQFAA VR+CKPPEVYKGKGIMYVDEVIK+KQGKKSK
Sbjct: 84  DKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 125

BLAST of CSPI06G30990 vs. TrEMBL
Match: B9SNA1_RICCO (50S ribosomal protein L6, putative OS=Ricinus communis GN=RCOM_0174250 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-49
Identity = 97/102 (95.10%), Postives = 101/102 (99.02%), Query Frame = 1

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAE+ GRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAESEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 103
           DKQRVHQFAA+VRSCKPPEVYKGKGIMY+DEVIK+KQGKKSK
Sbjct: 61  DKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK 102

BLAST of CSPI06G30990 vs. TrEMBL
Match: A0A067LD45_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00217 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-49
Identity = 97/102 (95.10%), Postives = 101/102 (99.02%), Query Frame = 1

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           M+AKFFRFLKIVGVGYKARAEA GRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MDAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 103
           DKQRVHQFAA+VRSCKPPEVYKGKGIMY+DEVIK+KQGKKSK
Sbjct: 61  DKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK 102

BLAST of CSPI06G30990 vs. TAIR10
Match: AT2G18400.1 (AT2G18400.1 ribosomal protein L6 family protein)

HSP 1 Score: 197.2 bits (500), Expect = 4.9e-51
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 1

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAE AGR LYLKLGYSHEVEL VPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 103
           DKQRVHQFAA VRSCKPPE YKGKGIMY DEV+K+KQGKKSK
Sbjct: 61  DKQRVHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102

BLAST of CSPI06G30990 vs. TAIR10
Match: AT1G05190.1 (AT1G05190.1 Ribosomal protein L6 family)

HSP 1 Score: 92.0 bits (227), Expect = 2.2e-19
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 1

Query: 5   FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQR 64
           F + L +VGVGY+A  +  G+ L L LG+SH V++ +P +++V   +N  +  +G DK  
Sbjct: 126 FEKKLILVGVGYRATVD--GKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSE 185

Query: 65  VHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 103
           + QFAA VR  +PPE YKGKG+ Y DE+++RK+GK  K
Sbjct: 186 IGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGK 221

BLAST of CSPI06G30990 vs. NCBI nr
Match: gi|449451529|ref|XP_004143514.1| (PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 2.7e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 103
           DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 102

BLAST of CSPI06G30990 vs. NCBI nr
Match: gi|659080283|ref|XP_008440709.1| (PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis melo])

HSP 1 Score: 206.8 bits (525), Expect = 1.8e-50
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 1

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 103
           DK RVHQFAAAVRSCKPPEVYKGKGIMY+DEVIKRKQGKKSK
Sbjct: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 102

BLAST of CSPI06G30990 vs. NCBI nr
Match: gi|955322903|ref|XP_014631616.1| (PREDICTED: uncharacterized protein LOC100527168 isoform X1 [Glycine max])

HSP 1 Score: 205.3 bits (521), Expect = 5.1e-50
Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 1

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNV+CCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGI 60

Query: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 103
           DKQRVHQFAA VR+CKPPEVYKGKGIMYVDEVIK+KQGKKSK
Sbjct: 61  DKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102

BLAST of CSPI06G30990 vs. NCBI nr
Match: gi|643736004|gb|KDP42420.1| (hypothetical protein JCGZ_00217 [Jatropha curcas])

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-49
Identity = 97/102 (95.10%), Postives = 101/102 (99.02%), Query Frame = 1

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           M+AKFFRFLKIVGVGYKARAEA GRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MDAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 103
           DKQRVHQFAA+VRSCKPPEVYKGKGIMY+DEVIK+KQGKKSK
Sbjct: 61  DKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK 102

BLAST of CSPI06G30990 vs. NCBI nr
Match: gi|351727437|ref|NP_001235881.1| (uncharacterized protein LOC100527168 [Glycine max])

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-49
Identity = 97/102 (95.10%), Postives = 100/102 (98.04%), Query Frame = 1

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNV+CCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGI 60

Query: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 103
           DKQRVHQFAA  R+CKPPEVYKGKGIMYVDEVIK+KQGKKSK
Sbjct: 61  DKQRVHQFAATARTCKPPEVYKGKGIMYVDEVIKKKQGKKSK 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RM06_MARPO7.2e-3669.0060S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV... [more]
RL6_SYNJA1.6e-1950.0050S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplF PE=3 SV=... [more]
RL6_BEII93.6e-1951.0450S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 ... [more]
RL6_LACSS3.6e-1948.9850S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpl... [more]
RL6_LACCB8.0e-1953.1950S ribosomal protein L6 OS=Lactobacillus casei (strain BL23) GN=rplF PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KJ40_CUCSA1.9e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502670 PE=3 SV=1[more]
I1KDT7_SOYBN3.6e-5096.08Uncharacterized protein OS=Glycine max GN=GLYMA_06G239200 PE=3 SV=1[more]
K7KX08_SOYBN3.6e-5096.08Uncharacterized protein OS=Glycine max PE=3 SV=1[more]
B9SNA1_RICCO1.0e-4995.1050S ribosomal protein L6, putative OS=Ricinus communis GN=RCOM_0174250 PE=3 SV=1[more]
A0A067LD45_JATCU1.0e-4995.10Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00217 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G18400.14.9e-5192.16 ribosomal protein L6 family protein[more]
AT1G05190.12.2e-1944.90 Ribosomal protein L6 family[more]
Match NameE-valueIdentityDescription
gi|449451529|ref|XP_004143514.1|2.7e-51100.00PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis sativus][more]
gi|659080283|ref|XP_008440709.1|1.8e-5098.04PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis melo][more]
gi|955322903|ref|XP_014631616.1|5.1e-5096.08PREDICTED: uncharacterized protein LOC100527168 isoform X1 [Glycine max][more]
gi|643736004|gb|KDP42420.1|1.5e-4995.10hypothetical protein JCGZ_00217 [Jatropha curcas][more]
gi|351727437|ref|NP_001235881.1|1.5e-4995.10uncharacterized protein LOC100527168 [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000702Ribosomal_L6
IPR002358Ribosomal_L6_CS
IPR019906Ribosomal_L6_bac-type
IPR020040Ribosomal_L6_a/b-dom
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0002181 cytoplasmic translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G30990.1CSPI06G30990.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 1..102
score: 1.0
IPR002358Ribosomal protein L6, conserved sitePROSITEPS00525RIBOSOMAL_L6_1coord: 78..86
scor
IPR019906Ribosomal protein L6, bacterial-typePRINTSPR00059RIBOSOMALL6coord: 65..86
score: 8.2E-13coord: 23..39
score: 8.2
IPR020040Ribosomal protein L6, alpha-beta domainGENE3DG3DSA:3.90.930.12coord: 7..101
score: 1.1
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 12..88
score: 2.5
IPR020040Ribosomal protein L6, alpha-beta domainunknownSSF56053Ribosomal protein L6coord: 5..100
score: 4.32
NoneNo IPR availablePANTHERPTHR11655:SF17RIBOSOMAL PROTEIN L6-RELATEDcoord: 1..102
score: 1.0

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G30990Wax gourdcpiwgoB627
CSPI06G30990Wild cucumber (PI 183967)cpicpiB077
CSPI06G30990Wild cucumber (PI 183967)cpicpiB127
CSPI06G30990Wild cucumber (PI 183967)cpicpiB163
CSPI06G30990Cucumber (Gy14) v1cgycpiB510
CSPI06G30990Cucurbita maxima (Rimu)cmacpiB349
CSPI06G30990Cucurbita maxima (Rimu)cmacpiB487
CSPI06G30990Cucurbita maxima (Rimu)cmacpiB785
CSPI06G30990Cucurbita maxima (Rimu)cmacpiB893
CSPI06G30990Cucurbita moschata (Rifu)cmocpiB185
CSPI06G30990Cucurbita moschata (Rifu)cmocpiB342
CSPI06G30990Cucurbita moschata (Rifu)cmocpiB478
CSPI06G30990Cucurbita moschata (Rifu)cmocpiB681
CSPI06G30990Cucurbita moschata (Rifu)cmocpiB775
CSPI06G30990Cucurbita moschata (Rifu)cmocpiB873
CSPI06G30990Cucumber (Chinese Long) v2cpicuB271
CSPI06G30990Cucumber (Chinese Long) v2cpicuB285
CSPI06G30990Cucumber (Chinese Long) v2cpicuB302
CSPI06G30990Melon (DHL92) v3.5.1cpimeB478
CSPI06G30990Melon (DHL92) v3.5.1cpimeB488
CSPI06G30990Melon (DHL92) v3.5.1cpimeB504
CSPI06G30990Watermelon (Charleston Gray)cpiwcgB498
CSPI06G30990Watermelon (Charleston Gray)cpiwcgB515
CSPI06G30990Watermelon (Charleston Gray)cpiwcgB539
CSPI06G30990Watermelon (97103) v1cpiwmB489
CSPI06G30990Watermelon (97103) v1cpiwmB499
CSPI06G30990Watermelon (97103) v1cpiwmB513
CSPI06G30990Cucurbita pepo (Zucchini)cpecpiB231
CSPI06G30990Cucurbita pepo (Zucchini)cpecpiB468
CSPI06G30990Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G30990Cucurbita pepo (Zucchini)cpecpiB586
CSPI06G30990Cucurbita pepo (Zucchini)cpecpiB849
CSPI06G30990Bottle gourd (USVL1VR-Ls)cpilsiB458
CSPI06G30990Bottle gourd (USVL1VR-Ls)cpilsiB477
CSPI06G30990Bottle gourd (USVL1VR-Ls)cpilsiB493
CSPI06G30990Melon (DHL92) v3.6.1cpimedB468
CSPI06G30990Melon (DHL92) v3.6.1cpimedB474
CSPI06G30990Melon (DHL92) v3.6.1cpimedB490
CSPI06G30990Cucumber (Gy14) v2cgybcpiB078
CSPI06G30990Cucumber (Gy14) v2cgybcpiB143
CSPI06G30990Cucumber (Gy14) v2cgybcpiB190
CSPI06G30990Silver-seed gourdcarcpiB0794
CSPI06G30990Silver-seed gourdcarcpiB0982
CSPI06G30990Silver-seed gourdcarcpiB0985
CSPI06G30990Silver-seed gourdcarcpiB1019
CSPI06G30990Silver-seed gourdcarcpiB1058
CSPI06G30990Cucumber (Chinese Long) v3cpicucB322
CSPI06G30990Cucumber (Chinese Long) v3cpicucB336
CSPI06G30990Cucumber (Chinese Long) v3cpicucB352
CSPI06G30990Watermelon (97103) v2cpiwmbB489
CSPI06G30990Watermelon (97103) v2cpiwmbB507
CSPI06G30990Watermelon (97103) v2cpiwmbB529