CSPI06G30990 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACATTTCAGTCGGGTCTTCAAAGGGTTATTCCTACAATTTTTCCAATACTTATCTGAAAAAAAAAATGTTTTCGCTTTTTTATAAACCATATTACCTTCGGCCACTGCAGCCGCCCCGTAGCACGCCGCCGTTCACCCCACTTCGCGCGCTGTTTCCGTTCCGACCACGCTCGTTACCTCTCTGTCGTAGCACAATCTTTAATCGCAAGCCCTTATAATCCCTCCTCCTCTCAATCACTCACTCGCCCTACTTCCAGGTTTGTCCATTCTAGGTCTTCCTCAGTTACGGTTCCTACTATCTCGATTGTGTATATATATCTTTCATAGTTCCAAAATGTTGTTCGCGTGTCTAATATCAACGAGGCATTAGCATGAGTAAGGTACTGACTATTTTTTTCCAGCACTGTAACCGTGATTGTATGGTTATGCTCGCAGTTTTGTTTATTACTGATGTATACACCTTAGATAATCTGGTGTTTGATTACTTTTTTTTTTTGCATGATTATTGTGGTTTTGTCAAATGAAGATCACGGCTCTTTTATTCTTGACATTATGAGTATCTCTTTGCAAATCTTCTCTATGTGGAAGATTATTAGCTGTGTCCTTTAGTTTCAAAATACTCAAATTCTCGAGACATGAATTGTAACTTGTTACGATCTTTTGTTTGAATGGCTCTATTGTTGAAGCAGCTTCTTTACTTTGTCTGAATGTGATGTGATTTCCATAACCATGGTATTCATCTTTGCATTTTGATTTCTTTTTCTTTTTATCCCGGTAAAGTTCTTTTATTGATGTTGCCCGAGTTGGTAAGCTTATTACATTCATATTTTTATATAATCCTTTGCCATTGTTCTCCCTATATTATAGCTATATTATCAGTAAAGATACTATTTTCTGAGTTTTGTATTTCAATCTTAATATTGAAGCTTCAGCTATCACATCTCCCTTCGCAATTGAGTTTTAAATTTTATATTAATTAAAGTCTAAACTTTACCTTGTTCTGTGTTTTTTCCCACCATTATTTTCCCCATTTTTGAGTGAGGTTCAATCTTAATCTTGAAGCAGGACTGTTGTTTGTGAGGCTACTATGTAATACTACATTAAGAAAAGAAATCATAGTTGAAGTGGACATGAAAGAAAGCCCCTAAACATAAGGAATTTTGATTTCAAGCTTAGTAAATTTGATTCTTTTATTTAATAAAGGAAAAGCCCTAGTTATTTTACTAGTTTTCAAAAACAATTAAAAAGTTCCAAGGGCCAAGGGCCAAGGGCTTCGCGGAATGTGTGCACCTTATTTTTTAAACATAGCATCTACTATGGGCTCTCTTAACAAAGGTCAATAAGGGCAGGTATAATACAAAACTTGGAGGAAATGAGTTTATCTCATGGTGGTCACCTATCTAGAATTTAATAATCTACGAGTTTCTTTTGTGTCCATATGTTGTAGGTAGAGGTAAAAAGGTTATTTTGTAAGATTGGTCAAGGTGCACAAGCAAGTTGGTGAGGGCACTAACAAATAGAAAAATATATTTGTTTACTTGTGCCGTGGGGGGGTTTCAGGGGGTGCTTTGGCATCCATATGGTGTGGAGTAAAGGGGTTGCCATGTAAGATTAGTCAAGGCATGCTTGCAAAGTTGGTAAGGATACCTGCGTAGGTGTTGATGAGCTTTATAGCAGCACCTAGAGGACCTTCAGAGGGTGATTGGTGGATCAGATGGGTCAACATTGTCTTCTTTCTCATCTGGTTATCTCATTTTCGTTCATATGGGGATCAAGATAATAGGGTGACATGGGGATGAGGAATGATTGACGAGATGATGGATTATCTTGATCATTAATTTTATCTCTTTATACTTTAGATTCACCATGCTAAATTTATCTCAACCTAATAATTTGACTTTGAAGTATGGTGGTAATTTGATGTTCTTTTGGATCAGAAAACTTTAGTCACATGAACAATTTGCGTTGGCAGGAAACAGGTTGGGTTGTATACATACCATATACCTGTGTGATGAAAGATTCAGGCTGGGTGGTTCCAGGTTTTGGAATCTCTCGAATTAGATCGATATAATTTTATAGGTTTAGTTTATAAATTCAATCCACTCGATGCTAGCTAGTAACTTTAATATCAGGGTTTTTTTAAGTAAATTATCATATCAGGTTTTGAACCAATGATCTTGTGAGATTTCTAAGTAATTGAAACTAATTGCTGCCCGTTCTTCTTGGCTCACCAAATTATCATTGGTGATTTATTTTCGAAGTTCATTTCCAATCCAATTACAGTTTTAATGTATACATACAAGCCCATTGACAATGAACTTTGCTGCTTGTTTAATGTTTAACCATTCCTATATCGTCTTTTTCCAACAAATATGAAATATGATATATTAAATATCAGTAGACTAAGTAGTTTGTGAATTTCATCTTAATAGGTAAGCGGAAACTATAATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGTTACAAAGCCAGAGCTGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGTTGAACTAACTGTTCCGCCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAACAAAGGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATGTCGACGAGGTCATAAAGAGGAAACAAGGAAAGAAGTCTAAATAAGATAACAGAAGCACAAAATCCCTCATTGATCTCTATTCAGACACAAAGTGCCTCAGTTATGAATAATTGTTCTTGTTGTATGCATGTTTTTAGAGCATTCCATGAATTAAGCCATGCGACTGAGACTGTAATTGCTTCAATGCCTATTCTTGAAATTTCGTCTCATCGATCATTAATGTTGAATGTTGAAGAATGCAGGCCATGCAAGAAAAGGCTATTTGAGTTGAGGGTTGTTGACCATTAATCCTTTTTTTCCAATGTGAGATTGAGCCTCTGACCATGTTGATCATTGAGGTTCAACTCTTGAACTATTATTAGTAACGCCTTCTTTTCTTCGCAAGATGTTTAAGCCAATTTTCTCACGAACCTTCATTAAAAGTTTCAAACAAAACAGC ATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGTTACAAAGCCAGAGCTGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGTTGAACTAACTGTTCCGCCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAACAAAGGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATGTCGACGAGGTCATAAAGAGGAAACAAGGAAAGAAGTCTAAATAA ATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGTTACAAAGCCAGAGCTGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGTTGAACTAACTGTTCCGCCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAACAAAGGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATGTCGACGAGGTCATAAAGAGGAAACAAGGAAAGAAGTCTAAATAA
BLAST of CSPI06G30990 vs. Swiss-Prot
Match: RM06_MARPO (60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2) HSP 1 Score: 151.0 bits (380), Expect = 7.2e-36 Identity = 69/100 (69.00%), Postives = 83/100 (83.00%), Query Frame = 1
BLAST of CSPI06G30990 vs. Swiss-Prot
Match: RL6_SYNJA (50S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplF PE=3 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 1.6e-19 Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1
BLAST of CSPI06G30990 vs. Swiss-Prot
Match: RL6_BEII9 (50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplF PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 3.6e-19 Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 1
BLAST of CSPI06G30990 vs. Swiss-Prot
Match: RL6_LACSS (50S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplF PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 3.6e-19 Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 1
BLAST of CSPI06G30990 vs. Swiss-Prot
Match: RL6_LACCB (50S ribosomal protein L6 OS=Lactobacillus casei (strain BL23) GN=rplF PE=3 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 8.0e-19 Identity = 50/94 (53.19%), Postives = 61/94 (64.89%), Query Frame = 1
BLAST of CSPI06G30990 vs. TrEMBL
Match: A0A0A0KJ40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502670 PE=3 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 1.9e-51 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1
BLAST of CSPI06G30990 vs. TrEMBL
Match: I1KDT7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G239200 PE=3 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 3.6e-50 Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 1
BLAST of CSPI06G30990 vs. TrEMBL
Match: K7KX08_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 3.6e-50 Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 1
BLAST of CSPI06G30990 vs. TrEMBL
Match: B9SNA1_RICCO (50S ribosomal protein L6, putative OS=Ricinus communis GN=RCOM_0174250 PE=3 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 1.0e-49 Identity = 97/102 (95.10%), Postives = 101/102 (99.02%), Query Frame = 1
BLAST of CSPI06G30990 vs. TrEMBL
Match: A0A067LD45_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00217 PE=3 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 1.0e-49 Identity = 97/102 (95.10%), Postives = 101/102 (99.02%), Query Frame = 1
BLAST of CSPI06G30990 vs. TAIR10
Match: AT2G18400.1 (AT2G18400.1 ribosomal protein L6 family protein) HSP 1 Score: 197.2 bits (500), Expect = 4.9e-51 Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 1
BLAST of CSPI06G30990 vs. TAIR10
Match: AT1G05190.1 (AT1G05190.1 Ribosomal protein L6 family) HSP 1 Score: 92.0 bits (227), Expect = 2.2e-19 Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 1
BLAST of CSPI06G30990 vs. NCBI nr
Match: gi|449451529|ref|XP_004143514.1| (PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis sativus]) HSP 1 Score: 209.5 bits (532), Expect = 2.7e-51 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1
BLAST of CSPI06G30990 vs. NCBI nr
Match: gi|659080283|ref|XP_008440709.1| (PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis melo]) HSP 1 Score: 206.8 bits (525), Expect = 1.8e-50 Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 1
BLAST of CSPI06G30990 vs. NCBI nr
Match: gi|955322903|ref|XP_014631616.1| (PREDICTED: uncharacterized protein LOC100527168 isoform X1 [Glycine max]) HSP 1 Score: 205.3 bits (521), Expect = 5.1e-50 Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 1
BLAST of CSPI06G30990 vs. NCBI nr
Match: gi|643736004|gb|KDP42420.1| (hypothetical protein JCGZ_00217 [Jatropha curcas]) HSP 1 Score: 203.8 bits (517), Expect = 1.5e-49 Identity = 97/102 (95.10%), Postives = 101/102 (99.02%), Query Frame = 1
BLAST of CSPI06G30990 vs. NCBI nr
Match: gi|351727437|ref|NP_001235881.1| (uncharacterized protein LOC100527168 [Glycine max]) HSP 1 Score: 203.8 bits (517), Expect = 1.5e-49 Identity = 97/102 (95.10%), Postives = 100/102 (98.04%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |