CSPI06G29590 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G29590
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionMADS-box transcription factor 27
LocationChr6 : 25651919 .. 25652257 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAATTCTGATGCACCAAGAAAATATAGAGTTGAGCAACAAAGTAAGCCTTTATTGTCAAGAAAACATGGAATTACACAGAAAGGTATTACTCTCAAATTTCAAATCATTAACAACAGTTAAATCCATACATACATCATTATGATAATTCAAATTTAAAACAAGAAAAAAAGCTTCATAATCTCTGCAGGTTTATGGACATGATTCAAGATCAGAGATGAACTTGGCCACCGGAAATGCCTTAATTCCATATGGTATCATCGCTGCGGCCCCTATTGCCGGCGACGCTCTGTGTGTGCCAATCCACCTTCAGCCCAGCCCGCGGGAGCAACAAGCTTAA

mRNA sequence

GGAATTCTGATGCACCAAGAAAATATAGAGTTGAGCAACAAAGTAAGCCTTTATTGTCAAGAAAACATGGAATTACACAGAAAGGTTTATGGACATGATTCAAGATCAGAGATGAACTTGGCCACCGGAAATGCCTTAATTCCATATGGTATCATCGCTGCGGCCCCTATTGCCGGCGACGCTCTGTGTGTGCCAATCCACCTTCAGCCCAGCCCGCGGGAGCAACAAGCTTAA

Coding sequence (CDS)

GGAATTCTGATGCACCAAGAAAATATAGAGTTGAGCAACAAAGTAAGCCTTTATTGTCAAGAAAACATGGAATTACACAGAAAGGTTTATGGACATGATTCAAGATCAGAGATGAACTTGGCCACCGGAAATGCCTTAATTCCATATGGTATCATCGCTGCGGCCCCTATTGCCGGCGACGCTCTGTGTGTGCCAATCCACCTTCAGCCCAGCCCGCGGGAGCAACAAGCTTAA
Homology
[Close]
BLAST of CSPI06G29590 vs. TrEMBL
Match: A0A151RF61_CAJCA (MADS-box transcription factor 27 OS=Cajanus cajan GN=KK1_037366 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-07
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1 

Query: 1   GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGD 60
           G L+HQEN+EL  KV+L CQENMEL +KVYG    SE N    N+++  G+       G+
Sbjct: 47  GSLIHQENVELYKKVNLICQENMELKKKVYGTKDESETN---RNSVLTNGL-----SIGE 106

Query: 61  ALCVPIHLQPSPREQQ 77
            L VP++LQ S  +QQ
Sbjct: 107 DLRVPVNLQLSQPQQQ 114

[Close]
BLAST of CSPI06G29590 vs. TrEMBL
Match: A0A162AJI3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_010757 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-06
Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 1 

Query: 1   GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPY--GIIAAAPIA 60
           G L+HQENIEL  KV+L CQENME+++KVYG D+     +   N  IPY  GII      
Sbjct: 95  GNLLHQENIELYKKVNLICQENMEMNKKVYGRDA----TVGNRNTAIPYDLGII------ 154

Query: 61  GDALCVPIHLQPSPREQ 76
            +   VP+HLQ    EQ
Sbjct: 155 -EDPRVPVHLQLCLPEQ 160

[Close]
BLAST of CSPI06G29590 vs. TrEMBL
Match: M0SCJ8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-06
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 1 

Query: 1   GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGD 60
           G  +HQEN+EL  KV+L  QENMELH+KVY  ++R     + G ++IPYG         D
Sbjct: 156 GRFIHQENMELHKKVNLVRQENMELHKKVY--ETRGTTG-SDGGSIIPYGFSFT-----D 215

Query: 61  ALCVPIHLQPSPREQQA 78
              VPIHL+ S  +QQA
Sbjct: 216 EAHVPIHLELSQPQQQA 224

[Close]
BLAST of CSPI06G29590 vs. TrEMBL
Match: D7T5C5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0211g00180 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-06
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1 

Query: 1   GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGD 60
           G L+ QEN+EL  K++L  QENMEL++KVY   S  ++  A+ NA+IPYG        G+
Sbjct: 156 GNLVQQENVELHKKMTLIRQENMELYKKVY---STRDVTAASTNAIIPYGF-----SIGE 215

Query: 61  ALCVPIHLQPSPREQQ 77
              VPIHL+ S  +Q+
Sbjct: 216 DSAVPIHLELSQPKQR 223

[Close]
BLAST of CSPI06G29590 vs. TrEMBL
Match: K7M7U5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G183800 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.0e-06
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1 

Query: 1   GILMHQENIELSNKVSLYCQENMELHRKVYG--HDSRSEMNLATGNALIPYGIIAAAPIA 60
           G L+HQEN+EL  KV+L CQENMEL +KVYG   D+++  +    N L   GI       
Sbjct: 156 GNLIHQENVELYQKVNLICQENMELKKKVYGTKDDNKTNRDSVLTNGL---GI------- 215

Query: 61  GDALCVPIHLQPSPREQQ 77
           G+ L VP++LQ S  +QQ
Sbjct: 216 GEDLQVPVNLQLSQPQQQ 223

[Close]
BLAST of CSPI06G29590 vs. NCBI nr
Match: gi|659079913|ref|XP_008440513.1| (PREDICTED: MADS-box transcription factor 23-like isoform X2 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 6.0e-27
Identity = 70/82 (85.37%), Postives = 72/82 (87.80%), Query Frame = 1 

Query: 1   GILMHQENIELSNKVSLYCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGII----AA 60
           GILMHQENIEL NKVSLYCQENMELHRKVYGH+ SRSEMNLA TGNALIPYGII    AA
Sbjct: 153 GILMHQENIELCNKVSLYCQENMELHRKVYGHNYSRSEMNLANTGNALIPYGIITATAAA 212

Query: 61  APIAGDALCVPIHLQPSPREQQ 77
           APIAG+ LCVPIHLQ SP EQQ
Sbjct: 213 APIAGNDLCVPIHLQLSPPEQQ 234

[Close]
BLAST of CSPI06G29590 vs. NCBI nr
Match: gi|659079915|ref|XP_008440514.1| (PREDICTED: MADS-box transcription factor 23-like isoform X3 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 6.0e-27
Identity = 70/82 (85.37%), Postives = 72/82 (87.80%), Query Frame = 1 

Query: 1   GILMHQENIELSNKVSLYCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGII----AA 60
           GILMHQENIEL NKVSLYCQENMELHRKVYGH+ SRSEMNLA TGNALIPYGII    AA
Sbjct: 142 GILMHQENIELCNKVSLYCQENMELHRKVYGHNYSRSEMNLANTGNALIPYGIITATAAA 201

Query: 61  APIAGDALCVPIHLQPSPREQQ 77
           APIAG+ LCVPIHLQ SP EQQ
Sbjct: 202 APIAGNDLCVPIHLQLSPPEQQ 223

[Close]
BLAST of CSPI06G29590 vs. NCBI nr
Match: gi|659079911|ref|XP_008440512.1| (PREDICTED: MADS-box transcription factor 23-like isoform X1 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 6.0e-27
Identity = 70/82 (85.37%), Postives = 72/82 (87.80%), Query Frame = 1 

Query: 1   GILMHQENIELSNKVSLYCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGII----AA 60
           GILMHQENIEL NKVSLYCQENMELHRKVYGH+ SRSEMNLA TGNALIPYGII    AA
Sbjct: 156 GILMHQENIELCNKVSLYCQENMELHRKVYGHNYSRSEMNLANTGNALIPYGIITATAAA 215

Query: 61  APIAGDALCVPIHLQPSPREQQ 77
           APIAG+ LCVPIHLQ SP EQQ
Sbjct: 216 APIAGNDLCVPIHLQLSPPEQQ 237

[Close]
BLAST of CSPI06G29590 vs. NCBI nr
Match: gi|1012329708|gb|KYP41274.1| (MADS-box transcription factor 27 [Cajanus cajan])

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-07
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1 

Query: 1   GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGD 60
           G L+HQEN+EL  KV+L CQENMEL +KVYG    SE N    N+++  G+       G+
Sbjct: 47  GSLIHQENVELYKKVNLICQENMELKKKVYGTKDESETN---RNSVLTNGL-----SIGE 106

Query: 61  ALCVPIHLQPSPREQQ 77
            L VP++LQ S  +QQ
Sbjct: 107 DLRVPVNLQLSQPQQQ 114

[Close]
BLAST of CSPI06G29590 vs. NCBI nr
Match: gi|719995796|ref|XP_010254615.1| (PREDICTED: MADS-box transcription factor 23 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 61.6 bits (148), Expect = 6.9e-07
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 1 

Query: 1   GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGD 60
           G L+HQEN+EL  KV+L  QEN+EL++KVYG     ++N A  NA+IP G        G+
Sbjct: 156 GNLIHQENMELYKKVNLIRQENIELYKKVYG---TRDINGAEKNAIIPSGF-----RIGE 215

Query: 61  ALCVPIHLQPSPREQQ 77
            L VPIHLQ S  +QQ
Sbjct: 216 DLHVPIHLQLSQPQQQ 223

The following BLAST results are available for this feature:
BLAST of CSPI06G29590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G29590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151RF61_CAJCA2.8e-0747.37MADS-box transcription factor 27 OS=Cajanus cajan GN=KK1_037366 PE=4 SV=1[more]
A0A162AJI3_DAUCA2.4e-0648.05Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_010757 PE=4 SV=1[more]
M0SCJ8_MUSAM3.1e-0646.75Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
D7T5C5_VITVI4.1e-0644.74Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0211g00180 PE=4 SV=... [more]
K7M7U5_SOYBN7.0e-0646.15Uncharacterized protein OS=Glycine max GN=GLYMA_14G183800 PE=4 SV=1[more]
BLAST of CSPI06G29590 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G29590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659079913|ref|XP_008440513.1|6.0e-2785.37PREDICTED: MADS-box transcription factor 23-like isoform X2 [Cucumis melo][more]
gi|659079915|ref|XP_008440514.1|6.0e-2785.37PREDICTED: MADS-box transcription factor 23-like isoform X3 [Cucumis melo][more]
gi|659079911|ref|XP_008440512.1|6.0e-2785.37PREDICTED: MADS-box transcription factor 23-like isoform X1 [Cucumis melo][more]
gi|1012329708|gb|KYP41274.1|4.1e-0747.37MADS-box transcription factor 27 [Cajanus cajan][more]
gi|719995796|ref|XP_010254615.1|6.9e-0750.00PREDICTED: MADS-box transcription factor 23 isoform X1 [Nelumbo nucifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0032440 2-alkenal reductase [NAD(P)] activity
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G29590.1CSPI06G29590.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G29590ClCG01G018230Watermelon (Charleston Gray)cpiwcgB453
CSPI06G29590Lsi01G008250Bottle gourd (USVL1VR-Ls)cpilsiB439
CSPI06G29590MELO3C007700.2Melon (DHL92) v3.6.1cpimedB493
CSPI06G29590CsaV3_6G044810Cucumber (Chinese Long) v3cpicucB363
CSPI06G29590Cla97C01G017500Watermelon (97103) v2cpiwmbB433
CSPI06G29590Bhi03G001332Wax gourdcpiwgoB638
CSPI06G29590CmaCh03G008540Cucurbita maxima (Rimu)cmacpiB689
CSPI06G29590Cp4.1LG10g01570Cucurbita pepo (Zucchini)cpecpiB080
CSPI06G29590CsGy6G029100Cucumber (Gy14) v2cgybcpiB287
CSPI06G29590Carg00740Silver-seed gourdcarcpiB0446
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G29590Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G29590Cucurbita pepo (Zucchini)cpecpiB841
CSPI06G29590Bottle gourd (USVL1VR-Ls)cpilsiB462
CSPI06G29590Bottle gourd (USVL1VR-Ls)cpilsiB492
CSPI06G29590Melon (DHL92) v3.6.1cpimedB462
CSPI06G29590Melon (DHL92) v3.6.1cpimedB471
CSPI06G29590Cucumber (Gy14) v2cgybcpiB082
CSPI06G29590Silver-seed gourdcarcpiB0003
CSPI06G29590Cucumber (Chinese Long) v3cpicucB328
CSPI06G29590Watermelon (97103) v2cpiwmbB448
CSPI06G29590Watermelon (97103) v2cpiwmbB528
CSPI06G29590Wax gourdcpiwgoB631
CSPI06G29590Wax gourdcpiwgoB654
CSPI06G29590Wild cucumber (PI 183967)cpicpiB085
CSPI06G29590Wild cucumber (PI 183967)cpicpiB136
CSPI06G29590Watermelon (97103) v1cpiwmB519
CSPI06G29590Cucumber (Gy14) v1cgycpiB122
CSPI06G29590Cucumber (Gy14) v1cgycpiB248
CSPI06G29590Cucumber (Gy14) v1cgycpiB476
CSPI06G29590Cucurbita maxima (Rimu)cmacpiB195
CSPI06G29590Cucurbita maxima (Rimu)cmacpiB893
CSPI06G29590Cucurbita moschata (Rifu)cmocpiB180
CSPI06G29590Cucurbita moschata (Rifu)cmocpiB681
CSPI06G29590Cucurbita moschata (Rifu)cmocpiB873
CSPI06G29590Cucumber (Chinese Long) v2cpicuB278
CSPI06G29590Cucumber (Chinese Long) v2cpicuB297
CSPI06G29590Cucumber (Chinese Long) v2cpicuB313
CSPI06G29590Melon (DHL92) v3.5.1cpimeB471
CSPI06G29590Melon (DHL92) v3.5.1cpimeB483
CSPI06G29590Melon (DHL92) v3.5.1cpimeB508
CSPI06G29590Watermelon (Charleston Gray)cpiwcgB451
CSPI06G29590Watermelon (Charleston Gray)cpiwcgB538
CSPI06G29590Watermelon (97103) v1cpiwmB487
CSPI06G29590Watermelon (97103) v1cpiwmB554